RNA–Protein interactions for RNA: ENST00000288398.10

TPM1-202, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-202ENST00000288398 KCNH4Q9UQ05 1017 aa17.3■□□□□ 0.36
TPM1-202ENST00000288398 CXCL11O14625 94 aa17.29■□□□□ 0.36
TPM1-202ENST00000288398 FMNL1O95466 1100 aaPredicted RBP17.29■□□□□ 0.36
TPM1-202ENST00000288398 UQCRFS1P1P0C7P4 283 aa17.29■□□□□ 0.36
TPM1-202ENST00000288398 MECOMQ03112 1051 aa17.29■□□□□ 0.36
TPM1-202ENST00000288398 FASTKD5Q7L8L6 764 aaKnown RBP17.29■□□□□ 0.36
TPM1-202ENST00000288398 ZFPM1Q8IX07 1006 aa17.29■□□□□ 0.36
TPM1-202ENST00000288398 GCC1Q96CN9 775 aa17.29■□□□□ 0.36
TPM1-202ENST00000288398 FAM163AQ96GL9 167 aaPredicted RBP17.29■□□□□ 0.36
TPM1-202ENST00000288398 ZNF333Q96JL9 665 aa17.29■□□□□ 0.36
TPM1-202ENST00000288398 ZHX2Q9Y6X8 837 aa17.29■□□□□ 0.36
TPM1-202ENST00000288398 MYCP01106 439 aaPredicted RBP17.28■□□□□ 0.36
TPM1-202ENST00000288398 GADL1Q6ZQY3 521 aa17.28■□□□□ 0.36
TPM1-202ENST00000288398 LRP2BPQ9P2M1 347 aa17.28■□□□□ 0.36
TPM1-202ENST00000288398 MYH2Q9UKX2 1941 aa17.27■□□□□ 0.36
TPM1-202ENST00000288398 MAP4K4O95819 1239 aaPredicted RBP17.27■□□□□ 0.36
TPM1-202ENST00000288398 PSMC4P43686 418 aa17.27■□□□□ 0.36
TPM1-202ENST00000288398 HNRNPUQ00839 825 aaKnown RBP eCLIP17.27■□□□□ 0.36
TPM1-202ENST00000288398 CCDC158Q5M9N0 1113 aa17.27■□□□□ 0.36
TPM1-202ENST00000288398 TTC39AQ5SRH9 613 aa17.27■□□□□ 0.36
TPM1-202ENST00000288398 C17orf99Q6UX52 265 aa17.27■□□□□ 0.36
TPM1-202ENST00000288398 RAET1EQ8TD07 263 aa17.27■□□□□ 0.36
TPM1-202ENST00000288398 ARHGAP39Q9C0H5 1083 aa17.27■□□□□ 0.36
TPM1-202ENST00000288398 HMG20BQ9P0W2 317 aa17.27■□□□□ 0.36
TPM1-202ENST00000288398 DOCK2Q92608 1830 aa17.26■□□□□ 0.35
TPM1-202ENST00000288398 GPR75-ASB3A0A0A6YYF3 556 aa17.26■□□□□ 0.35
TPM1-202ENST00000288398 CTNND1O60716 968 aaKnown RBP17.26■□□□□ 0.35
TPM1-202ENST00000288398 EN2P19622 333 aaPredicted RBP17.26■□□□□ 0.35
TPM1-202ENST00000288398 SH3TC2Q8TF17 1288 aa17.26■□□□□ 0.35
TPM1-202ENST00000288398 PNMA6EA0A0J9YXQ4 647 aa17.25■□□□□ 0.35
TPM1-202ENST00000288398 DDTLA6NHG4 134 aaPredicted RBP17.25■□□□□ 0.35
TPM1-202ENST00000288398 PTPRAP18433 802 aa17.25■□□□□ 0.35
TPM1-202ENST00000288398 ARID4AP29374 1257 aaPredicted RBP17.25■□□□□ 0.35
TPM1-202ENST00000288398 FCGRTP55899 365 aa17.25■□□□□ 0.35
TPM1-202ENST00000288398 CAP1Q01518 475 aa17.25■□□□□ 0.35
TPM1-202ENST00000288398 TMEM57Q8N5G2 664 aa17.25■□□□□ 0.35
TPM1-202ENST00000288398 SMCR8Q8TEV9 937 aaPredicted RBP17.25■□□□□ 0.35
TPM1-202ENST00000288398 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.25■□□□□ 0.35
TPM1-202ENST00000288398 BIN2Q9UBW5 565 aaPredicted RBP17.25■□□□□ 0.35
TPM1-202ENST00000288398 TNNQ9UQP3 1299 aa17.25■□□□□ 0.35
TPM1-202ENST00000288398 TRIM75PA6NK02 468 aa17.24■□□□□ 0.35
TPM1-202ENST00000288398 PHF20L1A8MW92 1017 aa17.24■□□□□ 0.35
TPM1-202ENST00000288398 BAG3O95817 575 aa17.24■□□□□ 0.35
TPM1-202ENST00000288398 TBC1D9Q6ZT07 1266 aa17.24■□□□□ 0.35
TPM1-202ENST00000288398 ITPRIPQ8IWB1 547 aa17.24■□□□□ 0.35
TPM1-202ENST00000288398 TEX11Q8IYF3 940 aa17.24■□□□□ 0.35
TPM1-202ENST00000288398 NSUN4Q96CB9 384 aaKnown RBP17.24■□□□□ 0.35
TPM1-202ENST00000288398 DDX4Q9NQI0 724 aaKnown RBP17.24■□□□□ 0.35
TPM1-202ENST00000288398 SRRDQ9UH36 339 aa17.24■□□□□ 0.35
TPM1-202ENST00000288398 HTTP42858 3142 aa17.24■□□□□ 0.35
TPM1-202ENST00000288398 RFX7Q2KHR2 1363 aa17.24■□□□□ 0.35
TPM1-202ENST00000288398 ATRNL1Q5VV63 1379 aa17.24■□□□□ 0.35
TPM1-202ENST00000288398 MYPNQ86TC9 1320 aa17.23■□□□□ 0.35
TPM1-202ENST00000288398 A0A0G2JLL6 359 aaPredicted RBP17.23■□□□□ 0.35
TPM1-202ENST00000288398 NPM3O75607 178 aaKnown RBP17.23■□□□□ 0.35
TPM1-202ENST00000288398 SURF6O75683 361 aaKnown RBP17.23■□□□□ 0.35
TPM1-202ENST00000288398 CYP2C8P10632 490 aa17.23■□□□□ 0.35
TPM1-202ENST00000288398 PLCG2P16885 1265 aa17.23■□□□□ 0.35
TPM1-202ENST00000288398 PI16Q6UXB8 463 aa17.23■□□□□ 0.35
TPM1-202ENST00000288398 SH3BP5LQ7L8J4 393 aa17.23■□□□□ 0.35
TPM1-202ENST00000288398 PRRT2Q7Z6L0 340 aaPredicted RBP17.23■□□□□ 0.35
TPM1-202ENST00000288398 TRIM47Q96LD4 638 aa17.23■□□□□ 0.35
TPM1-202ENST00000288398 TRIM34Q9BYJ4 488 aa17.23■□□□□ 0.35
TPM1-202ENST00000288398 RBBP6Q7Z6E9 1792 aaKnown RBP17.23■□□□□ 0.35
TPM1-202ENST00000288398 TBC1D12O60347 775 aa17.22■□□□□ 0.35
TPM1-202ENST00000288398 OSBPP22059 807 aa17.22■□□□□ 0.35
TPM1-202ENST00000288398 RHBDL3P58872 404 aa17.22■□□□□ 0.35
TPM1-202ENST00000288398 NAA16Q6N069 864 aaPredicted RBP17.22■□□□□ 0.35
TPM1-202ENST00000288398 OSBPL5Q9H0X9 879 aaPredicted RBP17.22■□□□□ 0.35
TPM1-202ENST00000288398 GPR108Q9NPR9 543 aa17.22■□□□□ 0.35
TPM1-202ENST00000288398 PNMA3Q9UL41 463 aa17.22■□□□□ 0.35
TPM1-202ENST00000288398 SLC45A1Q9Y2W3 748 aa17.22■□□□□ 0.35
TPM1-202ENST00000288398 AFG3L2Q9Y4W6 797 aa17.22■□□□□ 0.35
TPM1-202ENST00000288398 GRK4P32298 578 aa17.21■□□□□ 0.35
TPM1-202ENST00000288398 MCAMP43121 646 aa17.21■□□□□ 0.35
TPM1-202ENST00000288398 UBXN2AP68543 259 aa17.21■□□□□ 0.35
TPM1-202ENST00000288398 MAP3K10Q02779 954 aa17.21■□□□□ 0.35
TPM1-202ENST00000288398 MOGSQ13724 837 aa17.21■□□□□ 0.35
TPM1-202ENST00000288398 TNNI3KQ59H18 835 aa17.21■□□□□ 0.35
TPM1-202ENST00000288398 GPAT2Q6NUI2 795 aa17.21■□□□□ 0.35
TPM1-202ENST00000288398 TBC1D2Q9BYX2 928 aa17.21■□□□□ 0.35
TPM1-202ENST00000288398 SNRKQ9NRH2 765 aa17.21■□□□□ 0.35
TPM1-202ENST00000288398 FPGT-TNNI3KV9GXZ4 949 aa17.21■□□□□ 0.35
TPM1-202ENST00000288398 ADGRA2Q96PE1 1338 aa17.21■□□□□ 0.34
TPM1-202ENST00000288398 KIAA0100Q14667 2235 aaKnown RBP17.2■□□□□ 0.34
TPM1-202ENST00000288398 ATP8B2P98198 1209 aa17.2■□□□□ 0.34
TPM1-202ENST00000288398 PABPC4Q13310 644 aaKnown RBP eCLIP17.2■□□□□ 0.34
TPM1-202ENST00000288398 NKX2-3Q8TAU0 364 aa17.2■□□□□ 0.34
TPM1-202ENST00000288398 C1orf115Q9H7X2 142 aa17.2■□□□□ 0.34
TPM1-202ENST00000288398 AS3MTQ9HBK9 375 aa17.2■□□□□ 0.34
TPM1-202ENST00000288398 HERC5Q9UII4 1024 aaKnown RBP17.2■□□□□ 0.34
TPM1-202ENST00000288398 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.2■□□□□ 0.34
TPM1-202ENST00000288398 COL2A1P02458 1487 aaPredicted RBP17.19■□□□□ 0.34
TPM1-202ENST00000288398 DOCK1Q14185 1865 aa17.19■□□□□ 0.34
TPM1-202ENST00000288398 FAM196BA6NMK8 535 aa17.19■□□□□ 0.34
TPM1-202ENST00000288398 BCRP11274 1271 aa17.19■□□□□ 0.34
TPM1-202ENST00000288398 POLA2Q14181 598 aa17.19■□□□□ 0.34
TPM1-202ENST00000288398 CRACR2BQ8N4Y2 399 aaPredicted RBP17.19■□□□□ 0.34
TPM1-202ENST00000288398 SLAIN1Q8ND83 568 aa17.19■□□□□ 0.34
TPM1-202ENST00000288398 SSH3Q8TE77 659 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms