RNA–Protein interactions for RNA: ENST00000265619.6

VAPB-201, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,596 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-201ENST00000265619 VSTM4Q8IW00 320 aa10.01□□□□□ -0.81
VAPB-201ENST00000265619 TC2NQ8N9U0 490 aa10.01□□□□□ -0.81
VAPB-201ENST00000265619 PXDNQ92626 1479 aa10.01□□□□□ -0.81
VAPB-201ENST00000265619 ZSCAN12O43309 604 aa10□□□□□ -0.81
VAPB-201ENST00000265619 MYBL2P10244 700 aa10□□□□□ -0.81
VAPB-201ENST00000265619 ARMC3Q5W041 872 aa10□□□□□ -0.81
VAPB-201ENST00000265619 BAG1Q99933 345 aaPredicted RBP10□□□□□ -0.81
VAPB-201ENST00000265619 CRB1P82279 1406 aa10□□□□□ -0.81
VAPB-201ENST00000265619 TNS3Q68CZ2 1445 aa10□□□□□ -0.81
VAPB-201ENST00000265619 SERPINC1P01008 464 aa10□□□□□ -0.81
VAPB-201ENST00000265619 NCAPH2Q6IBW4 605 aa10□□□□□ -0.81
VAPB-201ENST00000265619 PPP4R3CPQ6ZMV5 832 aa10□□□□□ -0.81
VAPB-201ENST00000265619 BCAS4Q8TDM0 211 aa10□□□□□ -0.81
VAPB-201ENST00000265619 ACSBG1Q96GR2 724 aa10□□□□□ -0.81
VAPB-201ENST00000265619 NAT10Q9H0A0 1025 aaKnown RBP10□□□□□ -0.81
VAPB-201ENST00000265619 KDRP35968 1356 aa10□□□□□ -0.81
VAPB-201ENST00000265619 CYP27B1O15528 508 aa10□□□□□ -0.81
VAPB-201ENST00000265619 ARHGAP6O43182 974 aa10□□□□□ -0.81
VAPB-201ENST00000265619 SHOX2O60902 331 aaPredicted RBP10□□□□□ -0.81
VAPB-201ENST00000265619 PDHBP11177 359 aa10□□□□□ -0.81
VAPB-201ENST00000265619 RPS6KB1P23443 525 aa10□□□□□ -0.81
VAPB-201ENST00000265619 CWF19L2Q2TBE0 894 aaKnown RBP10□□□□□ -0.81
VAPB-201ENST00000265619 PPP1R42Q7Z4L9 355 aa10□□□□□ -0.81
VAPB-201ENST00000265619 IFNL2Q8IZJ0 200 aa10□□□□□ -0.81
VAPB-201ENST00000265619 TBC1D22AQ8WUA7 517 aa10□□□□□ -0.81
VAPB-201ENST00000265619 CDC5LQ99459 802 aaKnown RBP10□□□□□ -0.81
VAPB-201ENST00000265619 GNL3Q9BVP2 549 aaKnown RBP eCLIP10□□□□□ -0.81
VAPB-201ENST00000265619 USP44Q9H0E7 712 aa10□□□□□ -0.81
VAPB-201ENST00000265619 HPCAL4Q9UM19 191 aa10□□□□□ -0.81
VAPB-201ENST00000265619 RTN2O75298 545 aa9.99□□□□□ -0.81
VAPB-201ENST00000265619 TOP1P11387 765 aaKnown RBP9.99□□□□□ -0.81
VAPB-201ENST00000265619 PPARDQ03181 441 aa9.99□□□□□ -0.81
VAPB-201ENST00000265619 OTUD7BQ6GQQ9 843 aa9.99□□□□□ -0.81
VAPB-201ENST00000265619 RIC3Q7Z5B4 369 aa9.99□□□□□ -0.81
VAPB-201ENST00000265619 CABS1Q96KC9 395 aa9.99□□□□□ -0.81
VAPB-201ENST00000265619 VEZTQ9HBM0 779 aa9.99□□□□□ -0.81
VAPB-201ENST00000265619 C9orf78Q9NZ63 289 aaPredicted RBP9.99□□□□□ -0.81
VAPB-201ENST00000265619 AOX1Q06278 1338 aa9.99□□□□□ -0.81
VAPB-201ENST00000265619 A0A0D9SFI3 127 aa9.99□□□□□ -0.81
VAPB-201ENST00000265619 EBAG9O00559 213 aa9.99□□□□□ -0.81
VAPB-201ENST00000265619 CCP110O43303 1012 aa9.99□□□□□ -0.81
VAPB-201ENST00000265619 CTDNEP1O95476 244 aa9.99□□□□□ -0.81
VAPB-201ENST00000265619 CDC27P30260 824 aa9.99□□□□□ -0.81
VAPB-201ENST00000265619 CCT4P50991 539 aaKnown RBP9.99□□□□□ -0.81
VAPB-201ENST00000265619 RBM5P52756 815 aaKnown RBP eCLIP9.99□□□□□ -0.81
VAPB-201ENST00000265619 EIF4A1P60842 406 aaKnown RBP9.99□□□□□ -0.81
VAPB-201ENST00000265619 TRDNQ13061 729 aa9.99□□□□□ -0.81
VAPB-201ENST00000265619 NMIQ13287 307 aaPredicted RBP9.99□□□□□ -0.81
VAPB-201ENST00000265619 NEDD9Q14511 834 aa9.99□□□□□ -0.81
VAPB-201ENST00000265619 BLOC1S2Q6QNY1 142 aa9.99□□□□□ -0.81
VAPB-201ENST00000265619 FAM228AQ86W67 206 aa9.99□□□□□ -0.81
VAPB-201ENST00000265619 ZNF496Q96IT1 587 aaPredicted RBP9.99□□□□□ -0.81
VAPB-201ENST00000265619 DDX20Q9UHI6 824 aaKnown RBP9.99□□□□□ -0.81
VAPB-201ENST00000265619 ATP5J2-PTCD1G3V325 749 aa9.99□□□□□ -0.81
VAPB-201ENST00000265619 PREPLQ4J6C6 727 aaPredicted RBP9.99□□□□□ -0.81
VAPB-201ENST00000265619 RAD9BQ6WBX8 426 aa9.99□□□□□ -0.81
VAPB-201ENST00000265619 ZCRB1Q8TBF4 217 aaKnown RBP9.99□□□□□ -0.81
VAPB-201ENST00000265619 CDC23Q9UJX2 597 aa9.99□□□□□ -0.81
VAPB-201ENST00000265619 CFAP45Q9UL16 551 aa9.99□□□□□ -0.81
VAPB-201ENST00000265619 ODF2LQ9ULJ1 636 aa9.99□□□□□ -0.81
VAPB-201ENST00000265619 CLIC4Q9Y696 253 aa9.99□□□□□ -0.81
VAPB-201ENST00000265619 CRYBG1Q9Y4K1 1723 aa9.99□□□□□ -0.81
VAPB-201ENST00000265619 NBPF7P0C2Y1 421 aaPredicted RBP9.98□□□□□ -0.81
VAPB-201ENST00000265619 UBTFL1P0CB47 393 aaPredicted RBP9.98□□□□□ -0.81
VAPB-201ENST00000265619 GCFC2P16383 781 aaKnown RBP9.98□□□□□ -0.81
VAPB-201ENST00000265619 PDE4BQ07343 736 aa9.98□□□□□ -0.81
VAPB-201ENST00000265619 FAM182BQ5T319 152 aa9.98□□□□□ -0.81
VAPB-201ENST00000265619 ZNF589Q86UQ0 364 aaPredicted RBP9.98□□□□□ -0.81
VAPB-201ENST00000265619 C8orf37Q96NL8 207 aa9.98□□□□□ -0.81
VAPB-201ENST00000265619 CCDC85AQ96PX6 553 aaPredicted RBP9.98□□□□□ -0.81
VAPB-201ENST00000265619 NRDCO43847 1150 aa9.98□□□□□ -0.81
VAPB-201ENST00000265619 AP1G2O75843 785 aa9.98□□□□□ -0.81
VAPB-201ENST00000265619 PHKG2P15735 406 aa9.98□□□□□ -0.81
VAPB-201ENST00000265619 NLRP12P59046 1061 aa9.98□□□□□ -0.81
VAPB-201ENST00000265619 ZNF569Q5MCW4 686 aa9.98□□□□□ -0.81
VAPB-201ENST00000265619 ZNF483Q8TF39 744 aaPredicted RBP9.98□□□□□ -0.81
VAPB-201ENST00000265619 MAP4K1Q92918 833 aa9.98□□□□□ -0.81
VAPB-201ENST00000265619 SMARCC1Q92922 1105 aaPredicted RBP9.98□□□□□ -0.81
VAPB-201ENST00000265619 NCOA5Q9HCD5 579 aaKnown RBP9.98□□□□□ -0.81
VAPB-201ENST00000265619 GJB4Q9NTQ9 266 aa9.98□□□□□ -0.81
VAPB-201ENST00000265619 MAP3K2Q9Y2U5 619 aa9.98□□□□□ -0.81
VAPB-201ENST00000265619 RGPD5Q99666 1765 aa9.98□□□□□ -0.81
VAPB-201ENST00000265619 ABCC6O95255 1503 aa9.98□□□□□ -0.81
VAPB-201ENST00000265619 KLHL33A6NCF5 533 aa9.98□□□□□ -0.81
VAPB-201ENST00000265619 TBX2Q13207 712 aaPredicted RBP9.98□□□□□ -0.81
VAPB-201ENST00000265619 SNX1Q13596 522 aa9.98□□□□□ -0.81
VAPB-201ENST00000265619 TEX11Q8IYF3 940 aa9.98□□□□□ -0.81
VAPB-201ENST00000265619 STAG1Q8WVM7 1258 aa9.98□□□□□ -0.81
VAPB-201ENST00000265619 MRPS27Q92552 414 aaKnown RBP9.98□□□□□ -0.81
VAPB-201ENST00000265619 THOC1Q96FV9 657 aaKnown RBP9.98□□□□□ -0.81
VAPB-201ENST00000265619 BPIFA3Q9BQP9 254 aa9.98□□□□□ -0.81
VAPB-201ENST00000265619 A1CFQ9NQ94 594 aaKnown RBP9.98□□□□□ -0.81
VAPB-201ENST00000265619 STRCQ7RTU9 1775 aa9.97□□□□□ -0.81
VAPB-201ENST00000265619 ERLIN1O75477 346 aa9.97□□□□□ -0.81
VAPB-201ENST00000265619 ZKSCAN1P17029 563 aaPredicted RBP9.97□□□□□ -0.81
VAPB-201ENST00000265619 DDR1Q08345 913 aa9.97□□□□□ -0.81
VAPB-201ENST00000265619 SPRED3Q2MJR0 410 aa9.97□□□□□ -0.81
VAPB-201ENST00000265619 LONRF3Q496Y0 759 aa9.97□□□□□ -0.81
VAPB-201ENST00000265619 SLC35F6Q8N357 371 aa9.97□□□□□ -0.81
VAPB-201ENST00000265619 MSL3Q8N5Y2 521 aaKnown RBP9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms