RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 RABEP2Q9H5N1 569 aa12.66□□□□□ -0.38
PTPN4-201ENST00000263708 USH1CQ9Y6N9 552 aa12.66□□□□□ -0.38
PTPN4-201ENST00000263708 JADE1Q6IE81 842 aa12.66□□□□□ -0.38
PTPN4-201ENST00000263708 C8orf37Q96NL8 207 aa12.66□□□□□ -0.38
PTPN4-201ENST00000263708 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.66□□□□□ -0.38
PTPN4-201ENST00000263708 IFRD2Q12894 506 aaPredicted RBP12.66□□□□□ -0.38
PTPN4-201ENST00000263708 FCHSD1Q86WN1 690 aa12.66□□□□□ -0.38
PTPN4-201ENST00000263708 RNF10Q8N5U6 811 aaKnown RBP12.66□□□□□ -0.38
PTPN4-201ENST00000263708 A0A1B0GUA9 196 aa12.66□□□□□ -0.38
PTPN4-201ENST00000263708 PHEXP78562 749 aa12.66□□□□□ -0.38
PTPN4-201ENST00000263708 MCMDC2Q4G0Z9 681 aa12.66□□□□□ -0.38
PTPN4-201ENST00000263708 STK38LQ9Y2H1 464 aa12.66□□□□□ -0.38
PTPN4-201ENST00000263708 NOLC1Q14978 699 aaKnown RBP eCLIP12.66□□□□□ -0.38
PTPN4-201ENST00000263708 PPP2R5AQ15172 486 aa12.66□□□□□ -0.38
PTPN4-201ENST00000263708 LGSNQ5TDP6 509 aa12.66□□□□□ -0.38
PTPN4-201ENST00000263708 CCDC61Q9Y6R9 512 aa12.66□□□□□ -0.38
PTPN4-201ENST00000263708 MORC4Q8TE76 937 aa12.66□□□□□ -0.38
PTPN4-201ENST00000263708 SPTLC2O15270 562 aa12.66□□□□□ -0.38
PTPN4-201ENST00000263708 SYNJ2O15056 1496 aa12.66□□□□□ -0.38
PTPN4-201ENST00000263708 PIK3R4Q99570 1358 aa12.66□□□□□ -0.38
PTPN4-201ENST00000263708 KRT15P19012 456 aa12.65□□□□□ -0.38
PTPN4-201ENST00000263708 TUBB4BP68371 445 aa12.65□□□□□ -0.38
PTPN4-201ENST00000263708 ZYXQ15942 572 aaKnown RBP12.65□□□□□ -0.38
PTPN4-201ENST00000263708 VSIG1Q86XK7 387 aa12.65□□□□□ -0.38
PTPN4-201ENST00000263708 FNBP4Q8N3X1 1017 aaPredicted RBP12.65□□□□□ -0.38
PTPN4-201ENST00000263708 IFNKQ9P0W0 207 aa12.65□□□□□ -0.38
PTPN4-201ENST00000263708 ITM2BQ9Y287 266 aa12.65□□□□□ -0.38
PTPN4-201ENST00000263708 HNRNPCL2B2RXH8 293 aa12.65□□□□□ -0.38
PTPN4-201ENST00000263708 HNRNPCL1O60812 293 aaKnown RBP12.65□□□□□ -0.38
PTPN4-201ENST00000263708 CSPG5O95196 566 aa12.65□□□□□ -0.38
PTPN4-201ENST00000263708 LDHBP07195 334 aaKnown RBP12.65□□□□□ -0.38
PTPN4-201ENST00000263708 RXRAP19793 462 aa12.65□□□□□ -0.38
PTPN4-201ENST00000263708 KRT81Q14533 505 aa12.65□□□□□ -0.38
PTPN4-201ENST00000263708 OPHN1O60890 802 aa12.65□□□□□ -0.38
PTPN4-201ENST00000263708 LETM2Q2VYF4 491 aa12.65□□□□□ -0.38
PTPN4-201ENST00000263708 C8orf74Q6P047 294 aa12.65□□□□□ -0.38
PTPN4-201ENST00000263708 CNGA4Q8IV77 575 aa12.65□□□□□ -0.38
PTPN4-201ENST00000263708 OLA1Q9NTK5 396 aaKnown RBP12.65□□□□□ -0.38
PTPN4-201ENST00000263708 C9orf84Q5VXU9 1444 aa12.65□□□□□ -0.38
PTPN4-201ENST00000263708 PDE6AP16499 860 aa12.65□□□□□ -0.38
PTPN4-201ENST00000263708 SFMBT1Q9UHJ3 866 aa12.65□□□□□ -0.38
PTPN4-201ENST00000263708 EXOC7Q9UPT5 735 aa12.65□□□□□ -0.38
PTPN4-201ENST00000263708 PI4KAP2A4QPH2 592 aa12.65□□□□□ -0.38
PTPN4-201ENST00000263708 ARHGAP42A6NI28 874 aa12.65□□□□□ -0.38
PTPN4-201ENST00000263708 PI4KAP1Q8N8J0 262 aa12.65□□□□□ -0.38
PTPN4-201ENST00000263708 TBC1D2Q9BYX2 928 aa12.65□□□□□ -0.38
PTPN4-201ENST00000263708 SDCCAG3Q96C92 435 aa12.65□□□□□ -0.38
PTPN4-201ENST00000263708 SAT1P21673 171 aa12.65□□□□□ -0.38
PTPN4-201ENST00000263708 MIER3Q7Z3K6 550 aa12.65□□□□□ -0.38
PTPN4-201ENST00000263708 NUCKS1Q9H1E3 243 aaKnown RBP12.65□□□□□ -0.38
PTPN4-201ENST00000263708 KIF9Q9HAQ2 790 aa12.65□□□□□ -0.38
PTPN4-201ENST00000263708 SLC52A1Q9NWF4 448 aa12.65□□□□□ -0.38
PTPN4-201ENST00000263708 RUSC2Q8N2Y8 1516 aa12.65□□□□□ -0.39
PTPN4-201ENST00000263708 SYT10Q6XYQ8 523 aa12.65□□□□□ -0.39
PTPN4-201ENST00000263708 SH2D4AQ9H788 454 aa12.65□□□□□ -0.39
PTPN4-201ENST00000263708 GIGYF1O75420 1035 aaPredicted RBP12.64□□□□□ -0.39
PTPN4-201ENST00000263708 IFNL2Q8IZJ0 200 aa12.64□□□□□ -0.39
PTPN4-201ENST00000263708 CCDC94Q9BW85 323 aaPredicted RBP12.64□□□□□ -0.39
PTPN4-201ENST00000263708 SNRPA1P09661 255 aaKnown RBP12.64□□□□□ -0.39
PTPN4-201ENST00000263708 PPP2R3AQ06190 1150 aa12.64□□□□□ -0.39
PTPN4-201ENST00000263708 RNF169Q8NCN4 708 aa12.64□□□□□ -0.39
PTPN4-201ENST00000263708 UIMC1Q96RL1 719 aa12.64□□□□□ -0.39
PTPN4-201ENST00000263708 SLFN5Q08AF3 891 aa12.64□□□□□ -0.39
PTPN4-201ENST00000263708 ERICH3Q5RHP9 1530 aa12.64□□□□□ -0.39
PTPN4-201ENST00000263708 EIF6P56537 245 aaKnown RBP12.64□□□□□ -0.39
PTPN4-201ENST00000263708 RNF217Q8TC41 542 aa12.64□□□□□ -0.39
PTPN4-201ENST00000263708 VWA3BQ502W6 1294 aa12.64□□□□□ -0.39
PTPN4-201ENST00000263708 METTL13Q8N6R0 699 aa12.64□□□□□ -0.39
PTPN4-201ENST00000263708 RSAD2Q8WXG1 361 aa12.64□□□□□ -0.39
PTPN4-201ENST00000263708 GBP5Q96PP8 586 aa12.64□□□□□ -0.39
PTPN4-201ENST00000263708 ARHGEF10LQ9HCE6 1279 aa12.64□□□□□ -0.39
PTPN4-201ENST00000263708 RBM28Q9NW13 759 aaKnown RBP12.64□□□□□ -0.39
PTPN4-201ENST00000263708 AZI2Q9H6S1 392 aa12.64□□□□□ -0.39
PTPN4-201ENST00000263708 CCDC38Q502W7 563 aa12.64□□□□□ -0.39
PTPN4-201ENST00000263708 ANKRD13DQ6ZTN6 518 aa12.64□□□□□ -0.39
PTPN4-201ENST00000263708 SPATA17Q96L03 361 aa12.64□□□□□ -0.39
PTPN4-201ENST00000263708 KRT12Q99456 494 aa12.64□□□□□ -0.39
PTPN4-201ENST00000263708 PAG1Q9NWQ8 432 aa12.64□□□□□ -0.39
PTPN4-201ENST00000263708 GNAT2P19087 354 aa12.64□□□□□ -0.39
PTPN4-201ENST00000263708 EFCC1Q9HA90 598 aa12.64□□□□□ -0.39
PTPN4-201ENST00000263708 AKR1B15C9JRZ8 316 aaPredicted RBP12.63□□□□□ -0.39
PTPN4-201ENST00000263708 SKAP1Q86WV1 359 aa12.63□□□□□ -0.39
PTPN4-201ENST00000263708 DACT1Q9NYF0 836 aa12.63□□□□□ -0.39
PTPN4-201ENST00000263708 ARHGEF35A5YM69 484 aa12.63□□□□□ -0.39
PTPN4-201ENST00000263708 DNM1Q05193 864 aaKnown RBP12.63□□□□□ -0.39
PTPN4-201ENST00000263708 TRIM68Q6AZZ1 485 aa12.63□□□□□ -0.39
PTPN4-201ENST00000263708 TBC1D7Q9P0N9 293 aa12.63□□□□□ -0.39
PTPN4-201ENST00000263708 NSFL1CQ9UNZ2 370 aaKnown RBP12.63□□□□□ -0.39
PTPN4-201ENST00000263708 AMOTL2Q9Y2J4 779 aa12.63□□□□□ -0.39
PTPN4-201ENST00000263708 DNM2P50570 870 aa12.63□□□□□ -0.39
PTPN4-201ENST00000263708 PRKG1Q13976 671 aa12.63□□□□□ -0.39
PTPN4-201ENST00000263708 MUM1Q2TAK8 710 aa12.63□□□□□ -0.39
PTPN4-201ENST00000263708 VPS37BQ9H9H4 285 aa12.63□□□□□ -0.39
PTPN4-201ENST00000263708 NUB1Q9Y5A7 615 aa12.63□□□□□ -0.39
PTPN4-201ENST00000263708 KIF11P52732 1056 aa12.63□□□□□ -0.39
PTPN4-201ENST00000263708 DENND2CQ68D51 928 aa12.63□□□□□ -0.39
PTPN4-201ENST00000263708 NME9Q86XW9 330 aa12.63□□□□□ -0.39
PTPN4-201ENST00000263708 ZNF174Q15697 407 aa12.63□□□□□ -0.39
PTPN4-201ENST00000263708 HP1BP3Q5SSJ5 553 aaPredicted RBP12.63□□□□□ -0.39
PTPN4-201ENST00000263708 HACE1Q8IYU2 909 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 121.3 ms