RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 ZNRF3Q9ULT6 936 aa26.66■■□□□ 1.86
CDX1-201ENST00000231656 GAKO14976 1311 aa26.65■■□□□ 1.86
CDX1-201ENST00000231656 PPP4CP60510 307 aa26.65■■□□□ 1.86
CDX1-201ENST00000231656 HAND2P61296 217 aa26.65■■□□□ 1.86
CDX1-201ENST00000231656 STK3Q13188 491 aa26.65■■□□□ 1.86
CDX1-201ENST00000231656 SDR42E1Q8WUS8 393 aa26.65■■□□□ 1.86
CDX1-201ENST00000231656 ZMYM6O95789 1325 aa26.65■■□□□ 1.86
CDX1-201ENST00000231656 BAG3O95817 575 aa26.64■■□□□ 1.86
CDX1-201ENST00000231656 F13A1P00488 732 aa26.64■■□□□ 1.86
CDX1-201ENST00000231656 FBXL16Q8N461 479 aa26.64■■□□□ 1.86
CDX1-201ENST00000231656 GPR75-ASB3A0A0A6YYF3 556 aa26.63■■□□□ 1.85
CDX1-201ENST00000231656 RAD17O75943 681 aa26.63■■□□□ 1.85
CDX1-201ENST00000231656 KIAA0825Q8IV33 1275 aa26.63■■□□□ 1.85
CDX1-201ENST00000231656 JDP2Q8WYK2 163 aa26.63■■□□□ 1.85
CDX1-201ENST00000231656 NOL10Q9BSC4 688 aaKnown RBP26.63■■□□□ 1.85
CDX1-201ENST00000231656 CRNKL1Q9BZJ0 848 aaKnown RBP26.63■■□□□ 1.85
CDX1-201ENST00000231656 NACAP1Q9BZK3 213 aa26.63■■□□□ 1.85
CDX1-201ENST00000231656 PFKFB2O60825 505 aa26.63■■□□□ 1.85
CDX1-201ENST00000231656 NAPBQ9H115 298 aa26.63■■□□□ 1.85
CDX1-201ENST00000231656 BAZ2AQ9UIF9 1905 aaKnown RBP26.62■■□□□ 1.85
CDX1-201ENST00000231656 PSMD14O00487 310 aa26.62■■□□□ 1.85
CDX1-201ENST00000231656 ZNF213O14771 459 aa26.62■■□□□ 1.85
CDX1-201ENST00000231656 PDIA4P13667 645 aaKnown RBP26.62■■□□□ 1.85
CDX1-201ENST00000231656 BTDP43251 543 aa26.62■■□□□ 1.85
CDX1-201ENST00000231656 SCNN1DP51172 638 aa26.62■■□□□ 1.85
CDX1-201ENST00000231656 PRELPP51888 382 aa26.62■■□□□ 1.85
CDX1-201ENST00000231656 FGD1P98174 961 aa26.62■■□□□ 1.85
CDX1-201ENST00000231656 GPT2Q8TD30 523 aa26.62■■□□□ 1.85
CDX1-201ENST00000231656 DAGLAQ9Y4D2 1042 aa26.62■■□□□ 1.85
CDX1-201ENST00000231656 ADAMTSL1Q8N6G6 1762 aa26.62■■□□□ 1.85
CDX1-201ENST00000231656 VIL1P09327 827 aaKnown RBP26.61■■□□□ 1.85
CDX1-201ENST00000231656 MB21D2Q8IYB1 491 aaPredicted RBP26.61■■□□□ 1.85
CDX1-201ENST00000231656 SH3RF3Q8TEJ3 882 aaPredicted RBP26.61■■□□□ 1.85
CDX1-201ENST00000231656 NBPF3Q9H094 633 aa26.61■■□□□ 1.85
CDX1-201ENST00000231656 SOCS7O14512 581 aa26.61■■□□□ 1.85
CDX1-201ENST00000231656 TDO2P48775 406 aa26.61■■□□□ 1.85
CDX1-201ENST00000231656 RSBN1LQ6PCB5 846 aaPredicted RBP26.61■■□□□ 1.85
CDX1-201ENST00000231656 HHIPL2Q6UWX4 724 aa26.61■■□□□ 1.85
CDX1-201ENST00000231656 CERS3Q8IU89 383 aa26.61■■□□□ 1.85
CDX1-201ENST00000231656 CDK5RAP2Q96SN8 1893 aa26.61■■□□□ 1.85
CDX1-201ENST00000231656 PDCP20941 246 aa26.6■■□□□ 1.85
CDX1-201ENST00000231656 APOBRQ0VD83 1088 aa26.6■■□□□ 1.85
CDX1-201ENST00000231656 SCRN1Q12765 414 aa26.6■■□□□ 1.85
CDX1-201ENST00000231656 LARP1BQ659C4 914 aaKnown RBP26.6■■□□□ 1.85
CDX1-201ENST00000231656 TEKT1Q969V4 418 aa26.6■■□□□ 1.85
CDX1-201ENST00000231656 GOLGA6L3A6NEY3 463 aa26.59■■□□□ 1.85
CDX1-201ENST00000231656 L1TD1Q5T7N2 865 aaKnown RBP26.59■■□□□ 1.85
CDX1-201ENST00000231656 GIMAP6Q6P9H5 292 aa26.59■■□□□ 1.85
CDX1-201ENST00000231656 ARHGAP27Q6ZUM4 889 aa26.59■■□□□ 1.85
CDX1-201ENST00000231656 CHST3Q7LGC8 479 aa26.59■■□□□ 1.85
CDX1-201ENST00000231656 TMEM87AQ8NBN3 555 aa26.59■■□□□ 1.85
CDX1-201ENST00000231656 MRIQ9BWK5 157 aa26.59■■□□□ 1.85
CDX1-201ENST00000231656 MYO3BQ8WXR4 1341 aa26.59■■□□□ 1.85
CDX1-201ENST00000231656 EVCP57679 992 aa26.58■■□□□ 1.85
CDX1-201ENST00000231656 CXCL9Q07325 125 aa26.58■■□□□ 1.85
CDX1-201ENST00000231656 FOXD4L6Q3SYB3 417 aaPredicted RBP26.58■■□□□ 1.85
CDX1-201ENST00000231656 FOXD4L3Q6VB84 417 aaPredicted RBP26.58■■□□□ 1.85
CDX1-201ENST00000231656 NCOA7Q8NI08 942 aa26.58■■□□□ 1.85
CDX1-201ENST00000231656 ATP8A2Q9NTI2 1148 aa26.58■■□□□ 1.85
CDX1-201ENST00000231656 JAK2O60674 1132 aa26.58■■□□□ 1.85
CDX1-201ENST00000231656 CRKP46108 304 aa26.58■■□□□ 1.85
CDX1-201ENST00000231656 RHBDL3P58872 404 aa26.58■■□□□ 1.85
CDX1-201ENST00000231656 HDLBPQ00341 1268 aaKnown RBP26.58■■□□□ 1.85
CDX1-201ENST00000231656 LLPHQ9BRT6 129 aaKnown RBP26.58■■□□□ 1.85
CDX1-201ENST00000231656 DCP1AQ9NPI6 582 aaPredicted RBP26.58■■□□□ 1.85
CDX1-201ENST00000231656 ATP6V1DQ9Y5K8 247 aa26.58■■□□□ 1.85
CDX1-201ENST00000231656 WDR19Q8NEZ3 1342 aa26.58■■□□□ 1.85
CDX1-201ENST00000231656 TIAM2Q8IVF5 1701 aa26.57■■□□□ 1.84
CDX1-201ENST00000231656 VPS37CA5D8V6 355 aaPredicted RBP26.57■■□□□ 1.84
CDX1-201ENST00000231656 PLCG2P16885 1265 aa26.57■■□□□ 1.84
CDX1-201ENST00000231656 MCM5P33992 734 aa26.57■■□□□ 1.84
CDX1-201ENST00000231656 TBC1D10CQ8IV04 446 aa26.57■■□□□ 1.84
CDX1-201ENST00000231656 SMARCC2Q8TAQ2 1214 aa26.57■■□□□ 1.84
CDX1-201ENST00000231656 ZNF274Q96GC6 653 aaPredicted RBP26.57■■□□□ 1.84
CDX1-201ENST00000231656 GMLQ99445 158 aa26.57■■□□□ 1.84
CDX1-201ENST00000231656 ANTXR2P58335 489 aa26.56■■□□□ 1.84
CDX1-201ENST00000231656 ISY1Q9ULR0 285 aaKnown RBP26.56■■□□□ 1.84
CDX1-201ENST00000231656 SBF1O95248 1867 aa26.56■■□□□ 1.84
CDX1-201ENST00000231656 DICER1Q9UPY3 1922 aaKnown RBP26.56■■□□□ 1.84
CDX1-201ENST00000231656 PRC1O43663 620 aa26.56■■□□□ 1.84
CDX1-201ENST00000231656 YBX3P16989 372 aaKnown RBP eCLIP26.56■■□□□ 1.84
CDX1-201ENST00000231656 CIAPIN1Q6FI81 312 aa26.56■■□□□ 1.84
CDX1-201ENST00000231656 ZBTB12Q9Y330 459 aaPredicted RBP26.56■■□□□ 1.84
CDX1-201ENST00000231656 MBD3O95983 291 aa26.55■■□□□ 1.84
CDX1-201ENST00000231656 NCLP19338 710 aaKnown RBP26.55■■□□□ 1.84
CDX1-201ENST00000231656 PDIA3P30101 505 aaKnown RBP26.55■■□□□ 1.84
CDX1-201ENST00000231656 USP5P45974 858 aa26.55■■□□□ 1.84
CDX1-201ENST00000231656 CAVIN1Q6NZI2 390 aaKnown RBP26.55■■□□□ 1.84
CDX1-201ENST00000231656 RALYLQ86SE5 291 aaKnown RBP26.55■■□□□ 1.84
CDX1-201ENST00000231656 TEX11Q8IYF3 940 aa26.55■■□□□ 1.84
CDX1-201ENST00000231656 ZDHHC15Q96MV8 337 aa26.55■■□□□ 1.84
CDX1-201ENST00000231656 MKRN1Q9UHC7 482 aaKnown RBP26.55■■□□□ 1.84
CDX1-201ENST00000231656 SERPINA10Q9UK55 444 aa26.55■■□□□ 1.84
CDX1-201ENST00000231656 CNPY2Q9Y2B0 182 aa26.55■■□□□ 1.84
CDX1-201ENST00000231656 FOCADQ5VW36 1801 aa26.54■■□□□ 1.84
CDX1-201ENST00000231656 APOBEC3HQ6NTF7 200 aaKnown RBP26.54■■□□□ 1.84
CDX1-201ENST00000231656 CDC37L1Q7L3B6 337 aa26.54■■□□□ 1.84
CDX1-201ENST00000231656 USP48Q86UV5 1035 aa26.54■■□□□ 1.84
CDX1-201ENST00000231656 TGFBRAP1Q8WUH2 860 aa26.54■■□□□ 1.84
CDX1-201ENST00000231656 GDPD2Q9HCC8 539 aa26.54■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms