RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 GAGE6Q13070 117 aa10.44□□□□□ -0.74
CLN3-264ENST00000637985 OCC1Q8TAD7 63 aa10.44□□□□□ -0.74
CLN3-264ENST00000637985 LINC01600Q96MT4 127 aa10.44□□□□□ -0.74
CLN3-264ENST00000637985 CNFNQ9BYD5 112 aa10.44□□□□□ -0.74
CLN3-264ENST00000637985 RPP21Q9H633 154 aaKnown RBP10.44□□□□□ -0.74
CLN3-264ENST00000637985 NIT2Q9NQR4 276 aa10.44□□□□□ -0.74
CLN3-264ENST00000637985 PRR34Q9NV39 138 aa10.44□□□□□ -0.74
CLN3-264ENST00000637985 TMEM250H0YL14 139 aa10.43□□□□□ -0.74
CLN3-264ENST00000637985 K7EN84 100 aa10.43□□□□□ -0.74
CLN3-264ENST00000637985 RNASE7Q9H1E1 156 aaKnown RBP10.43□□□□□ -0.74
CLN3-264ENST00000637985 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.43□□□□□ -0.74
CLN3-264ENST00000637985 MUC2Q02817 5179 aa10.43□□□□□ -0.74
CLN3-264ENST00000637985 NKX2-5P52952 324 aaPredicted RBP10.42□□□□□ -0.74
CLN3-264ENST00000637985 TWIST1Q15672 202 aa10.42□□□□□ -0.74
CLN3-264ENST00000637985 ALKAL2Q6UX46 152 aa10.42□□□□□ -0.74
CLN3-264ENST00000637985 LINC00269Q8N2A0 174 aa10.42□□□□□ -0.74
CLN3-264ENST00000637985 LYPD6BQ8NI32 183 aa10.42□□□□□ -0.74
CLN3-264ENST00000637985 PGLYRP4Q96LB8 373 aa10.42□□□□□ -0.74
CLN3-264ENST00000637985 FAT4Q6V0I7 4981 aa10.42□□□□□ -0.74
CLN3-264ENST00000637985 hCG_2014768A0A024R1R8 64 aa10.4□□□□□ -0.74
CLN3-264ENST00000637985 A0A1B0GUV1 79 aa10.4□□□□□ -0.74
CLN3-264ENST00000637985 PANO1I0J062 215 aa10.4□□□□□ -0.74
CLN3-264ENST00000637985 HLA-DQA1P01909 254 aa10.4□□□□□ -0.74
CLN3-264ENST00000637985 TMEM243Q9BU79 118 aa10.4□□□□□ -0.74
CLN3-264ENST00000637985 USP17L23D6RBM5 183 aa10.39□□□□□ -0.75
CLN3-264ENST00000637985 GATCO43716 136 aaKnown RBP10.38□□□□□ -0.75
CLN3-264ENST00000637985 NDUFS6O75380 124 aaKnown RBP10.38□□□□□ -0.75
CLN3-264ENST00000637985 REG3AQ06141 175 aa10.38□□□□□ -0.75
CLN3-264ENST00000637985 COTL1Q14019 142 aa10.38□□□□□ -0.75
CLN3-264ENST00000637985 DGAT2L7PQ6IED9 249 aa10.38□□□□□ -0.75
CLN3-264ENST00000637985 KRTAP26-1Q6PEX3 210 aa10.38□□□□□ -0.75
CLN3-264ENST00000637985 CLPSL2Q6UWE3 100 aa10.38□□□□□ -0.75
CLN3-264ENST00000637985 FAM231DQ6ZW35 169 aa10.38□□□□□ -0.75
CLN3-264ENST00000637985 SMIM15Q7Z3B0 74 aa10.38□□□□□ -0.75
CLN3-264ENST00000637985 GTSF1Q8WW33 167 aa10.38□□□□□ -0.75
CLN3-264ENST00000637985 TRAV8-4A0A0B4J246 113 aa10.37□□□□□ -0.75
CLN3-264ENST00000637985 A8MWL6 223 aa10.37□□□□□ -0.75
CLN3-264ENST00000637985 UBE2L6O14933 153 aa10.37□□□□□ -0.75
CLN3-264ENST00000637985 GATD1Q8NB37 220 aa10.37□□□□□ -0.75
CLN3-264ENST00000637985 C20orf203Q8NBC4 194 aa10.37□□□□□ -0.75
CLN3-264ENST00000637985 AMTP48728 403 aa10.36□□□□□ -0.75
CLN3-264ENST00000637985 KRTAP10-8P60410 259 aa10.36□□□□□ -0.75
CLN3-264ENST00000637985 CT83Q5H943 113 aa10.36□□□□□ -0.75
CLN3-264ENST00000637985 TEX261Q6UWH6 196 aa10.36□□□□□ -0.75
CLN3-264ENST00000637985 C9orf163Q8N9P6 203 aa10.36□□□□□ -0.75
CLN3-264ENST00000637985 CLRN3Q8NCR9 226 aa10.36□□□□□ -0.75
CLN3-264ENST00000637985 IGLV4-60A0A075B6I1 120 aa10.35□□□□□ -0.75
CLN3-264ENST00000637985 A0A0J9YXV3 536 aa10.35□□□□□ -0.75
CLN3-264ENST00000637985 PRSS1P07477 247 aa10.35□□□□□ -0.75
CLN3-264ENST00000637985 FOXA3P55318 350 aaPredicted RBP10.35□□□□□ -0.75
CLN3-264ENST00000637985 SDIM1Q6ZPB5 146 aa10.35□□□□□ -0.75
CLN3-264ENST00000637985 EIF5A2Q9GZV4 153 aaKnown RBP10.35□□□□□ -0.75
CLN3-264ENST00000637985 TRAV26-2A0A0B4J265 109 aa10.34□□□□□ -0.75
CLN3-264ENST00000637985 CEBPGP53567 150 aa10.34□□□□□ -0.75
CLN3-264ENST00000637985 CIRBPQ14011 172 aaKnown RBP10.34□□□□□ -0.75
CLN3-264ENST00000637985 IGLV10-54A0A075B6I4 117 aa10.33□□□□□ -0.76
CLN3-264ENST00000637985 NCR2O95944 276 aa10.33□□□□□ -0.76
CLN3-264ENST00000637985 FAM210AQ96ND0 272 aa10.33□□□□□ -0.76
CLN3-264ENST00000637985 SMIM7Q9BQ49 75 aa10.33□□□□□ -0.76
CLN3-264ENST00000637985 BORCS7Q96B45 105 aa10.32□□□□□ -0.76
CLN3-264ENST00000637985 GFRA4Q9GZZ7 299 aa10.32□□□□□ -0.76
CLN3-264ENST00000637985 H7C423 109 aa10.31□□□□□ -0.76
CLN3-264ENST00000637985 LINC01551Q86U37 167 aa10.31□□□□□ -0.76
CLN3-264ENST00000637985 TSKUQ8WUA8 353 aa10.31□□□□□ -0.76
CLN3-264ENST00000637985 RPL39LQ96EH5 51 aaKnown RBP10.31□□□□□ -0.76
CLN3-264ENST00000637985 FAM231BA6NCW3 169 aa10.3□□□□□ -0.76
CLN3-264ENST00000637985 ZNF727A8MUV8 499 aa10.3□□□□□ -0.76
CLN3-264ENST00000637985 OSTCQ9NRP0 149 aa10.3□□□□□ -0.76
CLN3-264ENST00000637985 TRBV6-5A0A0K0K1A5 114 aa10.29□□□□□ -0.76
CLN3-264ENST00000637985 A0A1B0GUT8 65 aa10.29□□□□□ -0.76
CLN3-264ENST00000637985 SDHAF1A6NFY7 115 aa10.29□□□□□ -0.76
CLN3-264ENST00000637985 APCSP02743 223 aa10.29□□□□□ -0.76
CLN3-264ENST00000637985 SRP19P09132 144 aaKnown RBP10.29□□□□□ -0.76
CLN3-264ENST00000637985 CNBPP62633 177 aaKnown RBP10.29□□□□□ -0.76
CLN3-264ENST00000637985 AMMECR1LQ6DCA0 310 aa10.29□□□□□ -0.76
CLN3-264ENST00000637985 hDV102S1A0JD36 115 aa10.28□□□□□ -0.76
CLN3-264ENST00000637985 HIGD1CA8MV81 97 aa10.28□□□□□ -0.76
CLN3-264ENST00000637985 I3L3M4 83 aa10.28□□□□□ -0.76
CLN3-264ENST00000637985 TMEM191AQ9H0A3 160 aa10.28□□□□□ -0.76
CLN3-264ENST00000637985 A0A087WYN8 130 aa10.27□□□□□ -0.77
CLN3-264ENST00000637985 PHOX2AO14813 284 aa10.27□□□□□ -0.77
CLN3-264ENST00000637985 PMCHP20382 165 aa10.27□□□□□ -0.77
CLN3-264ENST00000637985 AP5S1Q9NUS5 200 aa10.27□□□□□ -0.77
CLN3-264ENST00000637985 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.26□□□□□ -0.77
CLN3-264ENST00000637985 FAM74A3Q4VXF1 159 aa10.26□□□□□ -0.77
CLN3-264ENST00000637985 RNASEKQ6P5S7 137 aaKnown RBP10.26□□□□□ -0.77
CLN3-264ENST00000637985 CFAP161Q6P656 301 aa10.26□□□□□ -0.77
CLN3-264ENST00000637985 RNF185Q96GF1 192 aa10.26□□□□□ -0.77
CLN3-264ENST00000637985 ST20Q9HBF5 79 aa10.26□□□□□ -0.77
CLN3-264ENST00000637985 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.25□□□□□ -0.77
CLN3-264ENST00000637985 A0A1B0GVG6 124 aa10.25□□□□□ -0.77
CLN3-264ENST00000637985 IGKV2-29A2NJV5 120 aaPredicted RBP10.25□□□□□ -0.77
CLN3-264ENST00000637985 FGF6P10767 208 aa10.25□□□□□ -0.77
CLN3-264ENST00000637985 ZNF25P17030 456 aaPredicted RBP10.25□□□□□ -0.77
CLN3-264ENST00000637985 TMEM241Q24JQ0 296 aa10.25□□□□□ -0.77
CLN3-264ENST00000637985 MRAP2Q96G30 205 aa10.25□□□□□ -0.77
CLN3-264ENST00000637985 IGHV3-64A0A075B6Q5 118 aa10.24□□□□□ -0.77
CLN3-264ENST00000637985 IGKV3OR2-268A0A0C4DH90 116 aa10.24□□□□□ -0.77
CLN3-264ENST00000637985 GAGE12HA6NDE8 117 aa10.24□□□□□ -0.77
CLN3-264ENST00000637985 RAB4AP20338 218 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms