RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 APOC3P02656 99 aa12.02□□□□□ -0.49
CLN3-247ENST00000636351 BTF3P20290 206 aaKnown RBP12.02□□□□□ -0.49
CLN3-247ENST00000636351 S100PP25815 95 aa12.02□□□□□ -0.49
CLN3-247ENST00000636351 KRTAP10-2P60368 255 aa12.02□□□□□ -0.49
CLN3-247ENST00000636351 RHEBQ15382 184 aa12.02□□□□□ -0.49
CLN3-247ENST00000636351 MRPL51Q4U2R6 128 aaKnown RBP12.02□□□□□ -0.49
CLN3-247ENST00000636351 NTM-AS1Q6ZSK4 140 aa12.02□□□□□ -0.49
CLN3-247ENST00000636351 CLRN3Q8NCR9 226 aa12.02□□□□□ -0.49
CLN3-247ENST00000636351 IMMP2LQ96T52 175 aa12.02□□□□□ -0.49
CLN3-247ENST00000636351 RPS10P5Q9NQ39 176 aa12.02□□□□□ -0.49
CLN3-247ENST00000636351 C7orf77A4D0Y5 90 aa12.01□□□□□ -0.49
CLN3-247ENST00000636351 CKS2P33552 79 aa12.01□□□□□ -0.49
CLN3-247ENST00000636351 RPS10P46783 165 aaKnown RBP12.01□□□□□ -0.49
CLN3-247ENST00000636351 AMTP48728 403 aa12.01□□□□□ -0.49
CLN3-247ENST00000636351 PKIAP61925 76 aa12.01□□□□□ -0.49
CLN3-247ENST00000636351 TMEM243Q9BU79 118 aa12.01□□□□□ -0.49
CLN3-247ENST00000636351 Q9HAA7 133 aa12.01□□□□□ -0.49
CLN3-247ENST00000636351 TRBV6-5A0A0K0K1A5 114 aa12□□□□□ -0.49
CLN3-247ENST00000636351 PPP1R17O96001 155 aa12□□□□□ -0.49
CLN3-247ENST00000636351 PMCHP20382 165 aa12□□□□□ -0.49
CLN3-247ENST00000636351 GAGE6Q13070 117 aa12□□□□□ -0.49
CLN3-247ENST00000636351 IQCJQ1A5X6 159 aa12□□□□□ -0.49
CLN3-247ENST00000636351 NFE4Q86UQ8 179 aa12□□□□□ -0.49
CLN3-247ENST00000636351 UBE2L6O14933 153 aa11.99□□□□□ -0.49
CLN3-247ENST00000636351 SVBPQ8N300 66 aa11.99□□□□□ -0.49
CLN3-247ENST00000636351 CHCHD7Q9BUK0 85 aa11.99□□□□□ -0.49
CLN3-247ENST00000636351 IBA57-AS1B1ANH7 110 aa11.98□□□□□ -0.49
CLN3-247ENST00000636351 D6R8Y8 96 aa11.98□□□□□ -0.49
CLN3-247ENST00000636351 APCSP02743 223 aa11.98□□□□□ -0.49
CLN3-247ENST00000636351 MPV17L2Q567V2 206 aa11.98□□□□□ -0.49
CLN3-247ENST00000636351 TMEM70Q9BUB7 260 aa11.98□□□□□ -0.49
CLN3-247ENST00000636351 I3L3M4 83 aa11.97□□□□□ -0.49
CLN3-247ENST00000636351 SNAPINO95295 136 aa11.97□□□□□ -0.49
CLN3-247ENST00000636351 LAGE3Q14657 143 aa11.97□□□□□ -0.49
CLN3-247ENST00000636351 ELOBQ15370 118 aa11.97□□□□□ -0.49
CLN3-247ENST00000636351 NRACQ8N912 160 aa11.97□□□□□ -0.49
CLN3-247ENST00000636351 TMEM242Q9NWH2 141 aa11.97□□□□□ -0.49
CLN3-247ENST00000636351 KLK12Q9UKR0 248 aa11.97□□□□□ -0.49
CLN3-247ENST00000636351 TRAV9-1A0A075B6T8 112 aa11.96□□□□□ -0.49
CLN3-247ENST00000636351 ANGP03950 147 aaKnown RBP11.96□□□□□ -0.49
CLN3-247ENST00000636351 SUMO2P61956 95 aaKnown RBP11.96□□□□□ -0.49
CLN3-247ENST00000636351 PSCAO43653 123 aa11.95□□□□□ -0.5
CLN3-247ENST00000636351 PPBPP02775 128 aa11.95□□□□□ -0.5
CLN3-247ENST00000636351 ATRAIDQ6UW56 229 aa11.95□□□□□ -0.5
CLN3-247ENST00000636351 SLC7A5P1Q8MH63 180 aa11.95□□□□□ -0.5
CLN3-247ENST00000636351 ORMDL3Q8N138 153 aa11.95□□□□□ -0.5
CLN3-247ENST00000636351 TRAV8-3A0A0A6YYJ7 113 aa11.94□□□□□ -0.5
CLN3-247ENST00000636351 CRPP02741 224 aa11.94□□□□□ -0.5
CLN3-247ENST00000636351 FCER1GP30273 86 aa11.94□□□□□ -0.5
CLN3-247ENST00000636351 RBX1P62877 108 aa11.94□□□□□ -0.5
CLN3-247ENST00000636351 Q8N976 141 aa11.94□□□□□ -0.5
CLN3-247ENST00000636351 UBE2WQ96B02 151 aa11.94□□□□□ -0.5
CLN3-247ENST00000636351 TRBV27A0A0K0K1C4 114 aa11.93□□□□□ -0.5
CLN3-247ENST00000636351 VCYO14598 125 aa11.93□□□□□ -0.5
CLN3-247ENST00000636351 TNFRSF6BO95407 300 aa11.93□□□□□ -0.5
CLN3-247ENST00000636351 TSHBP01222 138 aa11.93□□□□□ -0.5
CLN3-247ENST00000636351 POLR2KP53803 58 aaKnown RBP11.93□□□□□ -0.5
CLN3-247ENST00000636351 Q6ZRN7 208 aaPredicted RBP11.93□□□□□ -0.5
CLN3-247ENST00000636351 TMEM136Q6ZRR5 245 aa11.93□□□□□ -0.5
CLN3-247ENST00000636351 PRELID3AQ96N28 172 aa11.93□□□□□ -0.5
CLN3-247ENST00000636351 KIR2DL4Q99706 377 aa11.93□□□□□ -0.5
CLN3-247ENST00000636351 C20orf78Q9BR46 151 aa11.93□□□□□ -0.5
CLN3-247ENST00000636351 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.92□□□□□ -0.5
CLN3-247ENST00000636351 IGKV2-29A2NJV5 120 aaPredicted RBP11.92□□□□□ -0.5
CLN3-247ENST00000636351 NPYP01303 97 aa11.92□□□□□ -0.5
CLN3-247ENST00000636351 AMMECR1LQ6DCA0 310 aa11.92□□□□□ -0.5
CLN3-247ENST00000636351 CLPSL2Q6UWE3 100 aa11.92□□□□□ -0.5
CLN3-247ENST00000636351 HERC1Q15751 4861 aa11.92□□□□□ -0.5
CLN3-247ENST00000636351 RMI2Q96E14 147 aa11.91□□□□□ -0.5
CLN3-247ENST00000636351 TM2D2Q9BX73 214 aa11.91□□□□□ -0.5
CLN3-247ENST00000636351 TRBV24-1A0A075B6N3 115 aa11.9□□□□□ -0.5
CLN3-247ENST00000636351 PHOX2AO14813 284 aa11.9□□□□□ -0.5
CLN3-247ENST00000636351 FUSP35637 526 aaKnown RBP eCLIP11.9□□□□□ -0.5
CLN3-247ENST00000636351 RNASEKQ6P5S7 137 aaKnown RBP11.9□□□□□ -0.5
CLN3-247ENST00000636351 SMIM2Q9BVW6 85 aa11.9□□□□□ -0.5
CLN3-247ENST00000636351 IGKV2D-24A0A075B6R9 120 aa11.89□□□□□ -0.51
CLN3-247ENST00000636351 HLA-DQA1P01909 254 aa11.89□□□□□ -0.51
CLN3-247ENST00000636351 Q0VG73 95 aa11.89□□□□□ -0.51
CLN3-247ENST00000636351 IGLV4-60A0A075B6I1 120 aa11.88□□□□□ -0.51
CLN3-247ENST00000636351 EPM2AB3EWF7 344 aa11.88□□□□□ -0.51
CLN3-247ENST00000636351 EREGO14944 169 aa11.88□□□□□ -0.51
CLN3-247ENST00000636351 LINC00269Q8N2A0 174 aa11.88□□□□□ -0.51
CLN3-247ENST00000636351 MAP1LC3AQ9H492 121 aa11.88□□□□□ -0.51
CLN3-247ENST00000636351 LAMTOR2Q9Y2Q5 125 aa11.88□□□□□ -0.51
CLN3-247ENST00000636351 H7C423 109 aa11.87□□□□□ -0.51
CLN3-247ENST00000636351 FGF6P10767 208 aa11.87□□□□□ -0.51
CLN3-247ENST00000636351 RPL32P62910 135 aaKnown RBP11.87□□□□□ -0.51
CLN3-247ENST00000636351 COX19Q49B96 90 aa11.87□□□□□ -0.51
CLN3-247ENST00000636351 C20orf203Q8NBC4 194 aa11.87□□□□□ -0.51
CLN3-247ENST00000636351 C1orf43Q9BWL3 253 aa11.87□□□□□ -0.51
CLN3-247ENST00000636351 TGIF2-C20orf24A0A0A6YYL0 155 aa11.86□□□□□ -0.51
CLN3-247ENST00000636351 LOC389332A0A1B0GUA5 103 aa11.86□□□□□ -0.51
CLN3-247ENST00000636351 A0A1B0GUV1 79 aa11.86□□□□□ -0.51
CLN3-247ENST00000636351 TCAPO15273 167 aa11.86□□□□□ -0.51
CLN3-247ENST00000636351 ESDP10768 282 aa11.86□□□□□ -0.51
CLN3-247ENST00000636351 KIAA1644Q3SXP7 199 aa11.86□□□□□ -0.51
CLN3-247ENST00000636351 ENHOQ6UWT2 76 aa11.86□□□□□ -0.51
CLN3-247ENST00000636351 TMEM101Q96IK0 257 aa11.86□□□□□ -0.51
CLN3-247ENST00000636351 GNB1LQ9BYB4 327 aa11.86□□□□□ -0.51
CLN3-247ENST00000636351 COX11Q9Y6N1 276 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms