RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 COTL1Q14019 142 aa9.09□□□□□ -0.95
PNKP-218ENST00000625299 CHCHD10Q8WYQ3 142 aaPredicted RBP9.09□□□□□ -0.95
PNKP-218ENST00000625299 PGLYRP4Q96LB8 373 aa9.09□□□□□ -0.95
PNKP-218ENST00000625299 MLST8Q9BVC4 326 aa9.09□□□□□ -0.95
PNKP-218ENST00000625299 MED28Q9H204 178 aa9.09□□□□□ -0.95
PNKP-218ENST00000625299 LINC00474Q9P2X8 69 aa9.08□□□□□ -0.96
PNKP-218ENST00000625299 PFDN1O60925 122 aa9.07□□□□□ -0.96
PNKP-218ENST00000625299 AMMECR1LQ6DCA0 310 aa9.07□□□□□ -0.96
PNKP-218ENST00000625299 FER1L6-AS1Q8NA97 138 aa9.07□□□□□ -0.96
PNKP-218ENST00000625299 LINC00526Q96FQ7 95 aa9.07□□□□□ -0.96
PNKP-218ENST00000625299 NIT2Q9NQR4 276 aa9.07□□□□□ -0.96
PNKP-218ENST00000625299 FAM231BA6NCW3 169 aa9.06□□□□□ -0.96
PNKP-218ENST00000625299 RNASEKQ6P5S7 137 aaKnown RBP9.06□□□□□ -0.96
PNKP-218ENST00000625299 PKIGQ9Y2B9 76 aa9.06□□□□□ -0.96
PNKP-218ENST00000625299 CACNG7P62955 275 aa9.05□□□□□ -0.96
PNKP-218ENST00000625299 CARD19Q96LW7 228 aa9.05□□□□□ -0.96
PNKP-218ENST00000625299 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.04□□□□□ -0.96
PNKP-218ENST00000625299 IGKV2-29A2NJV5 120 aaPredicted RBP9.04□□□□□ -0.96
PNKP-218ENST00000625299 GIPP09681 153 aaPredicted RBP9.04□□□□□ -0.96
PNKP-218ENST00000625299 IGLC6P0CF74 106 aa9.04□□□□□ -0.96
PNKP-218ENST00000625299 XCL1P47992 114 aa9.04□□□□□ -0.96
PNKP-218ENST00000625299 FOXI1Q12951 378 aa9.04□□□□□ -0.96
PNKP-218ENST00000625299 OR2D3Q8NGH3 330 aa9.04□□□□□ -0.96
PNKP-218ENST00000625299 SFT2D1Q8WV19 159 aa9.04□□□□□ -0.96
PNKP-218ENST00000625299 TRGC1P0CF51 173 aa9.03□□□□□ -0.96
PNKP-218ENST00000625299 TMUB2Q71RG4 321 aa9.03□□□□□ -0.96
PNKP-218ENST00000625299 FAM213BQ8TBF2 198 aa9.03□□□□□ -0.96
PNKP-218ENST00000625299 MUC2Q02817 5179 aa9.03□□□□□ -0.96
PNKP-218ENST00000625299 RPL35P42766 123 aaKnown RBP9.02□□□□□ -0.97
PNKP-218ENST00000625299 RPS20P60866 119 aaKnown RBP9.02□□□□□ -0.97
PNKP-218ENST00000625299 KRTAP9-2Q9BYQ4 174 aa9.02□□□□□ -0.97
PNKP-218ENST00000625299 IGHV1-58A0A0C4DH39 117 aa9.01□□□□□ -0.97
PNKP-218ENST00000625299 NTF3P20783 257 aa9.01□□□□□ -0.97
PNKP-218ENST00000625299 GAGE2BQ13066 116 aa9.01□□□□□ -0.97
PNKP-218ENST00000625299 Q6ZNX1 250 aa9.01□□□□□ -0.97
PNKP-218ENST00000625299 CYTL1Q9NRR1 136 aa9.01□□□□□ -0.97
PNKP-218ENST00000625299 TRAV26-2A0A0B4J265 109 aa9□□□□□ -0.97
PNKP-218ENST00000625299 ARPC5O15511 151 aa9□□□□□ -0.97
PNKP-218ENST00000625299 APCSP02743 223 aa9□□□□□ -0.97
PNKP-218ENST00000625299 MT-ND6P03923 174 aa9□□□□□ -0.97
PNKP-218ENST00000625299 FGF6P10767 208 aa9□□□□□ -0.97
PNKP-218ENST00000625299 PTTG1IPP53801 180 aa9□□□□□ -0.97
PNKP-218ENST00000625299 SYCNQ0VAF6 134 aa9□□□□□ -0.97
PNKP-218ENST00000625299 CENPWQ5EE01 88 aa9□□□□□ -0.97
PNKP-218ENST00000625299 LYZL1Q6UWQ5 148 aa9□□□□□ -0.97
PNKP-218ENST00000625299 ZNF664Q8N3J9 261 aa9□□□□□ -0.97
PNKP-218ENST00000625299 KCNRGQ8N5I3 272 aa9□□□□□ -0.97
PNKP-218ENST00000625299 ZNF561-AS1K7EIQ3 104 aa8.99□□□□□ -0.97
PNKP-218ENST00000625299 CCL25O15444 150 aa8.99□□□□□ -0.97
PNKP-218ENST00000625299 PSORS1C2Q9UIG4 136 aa8.99□□□□□ -0.97
PNKP-218ENST00000625299 XKRY2A2RUG3 117 aa8.98□□□□□ -0.97
PNKP-218ENST00000625299 F2Z2F3 143 aa8.98□□□□□ -0.97
PNKP-218ENST00000625299 IFNA1P01562 189 aa8.98□□□□□ -0.97
PNKP-218ENST00000625299 C1orf137Q5JT78 98 aa8.98□□□□□ -0.97
PNKP-218ENST00000625299 PRR26Q8N8Z3 221 aa8.98□□□□□ -0.97
PNKP-218ENST00000625299 GATD1Q8NB37 220 aa8.98□□□□□ -0.97
PNKP-218ENST00000625299 OR5A1Q8NGJ0 315 aa8.98□□□□□ -0.97
PNKP-218ENST00000625299 MBD3L1Q8WWY6 194 aa8.98□□□□□ -0.97
PNKP-218ENST00000625299 RPL39LQ96EH5 51 aaKnown RBP8.98□□□□□ -0.97
PNKP-218ENST00000625299 LOC107984640A0A0U1RRK4 108 aa8.97□□□□□ -0.97
PNKP-218ENST00000625299 A0A1W2PNN7 141 aa8.97□□□□□ -0.97
PNKP-218ENST00000625299 TWIST1Q15672 202 aa8.97□□□□□ -0.97
PNKP-218ENST00000625299 TMEM101Q96IK0 257 aa8.97□□□□□ -0.97
PNKP-218ENST00000625299 BTF3L4Q96K17 158 aa8.97□□□□□ -0.97
PNKP-218ENST00000625299 LINC00959A0A1B0GUT2 108 aa8.96□□□□□ -0.98
PNKP-218ENST00000625299 C19orf71A6NCJ1 209 aa8.96□□□□□ -0.98
PNKP-218ENST00000625299 H7C423 109 aa8.96□□□□□ -0.98
PNKP-218ENST00000625299 NCR2O95944 276 aa8.96□□□□□ -0.98
PNKP-218ENST00000625299 BCL2P10415 239 aa8.96□□□□□ -0.98
PNKP-218ENST00000625299 CAMPP49913 170 aa8.96□□□□□ -0.98
PNKP-218ENST00000625299 ZNF25P17030 456 aaPredicted RBP8.95□□□□□ -0.98
PNKP-218ENST00000625299 ISOC2Q96AB3 205 aa8.95□□□□□ -0.98
PNKP-218ENST00000625299 GNG13Q9P2W3 67 aa8.95□□□□□ -0.98
PNKP-218ENST00000625299 A0A0U1RQV1 116 aa8.94□□□□□ -0.98
PNKP-218ENST00000625299 RAB19A4D1S5 217 aa8.94□□□□□ -0.98
PNKP-218ENST00000625299 UMAD1C9J7I0 102 aa8.94□□□□□ -0.98
PNKP-218ENST00000625299 G3V3Q6 166 aa8.94□□□□□ -0.98
PNKP-218ENST00000625299 H2AFB1P0C5Y9 115 aa8.94□□□□□ -0.98
PNKP-218ENST00000625299 GNG4P50150 75 aa8.94□□□□□ -0.98
PNKP-218ENST00000625299 RPL18AQ02543 176 aaKnown RBP8.94□□□□□ -0.98
PNKP-218ENST00000625299 SS18Q15532 418 aa8.94□□□□□ -0.98
PNKP-218ENST00000625299 PRR4Q16378 134 aa8.94□□□□□ -0.98
PNKP-218ENST00000625299 C9orf116Q5BN46 136 aaPredicted RBP8.94□□□□□ -0.98
PNKP-218ENST00000625299 PHF5AQ7RTV0 110 aaKnown RBP8.94□□□□□ -0.98
PNKP-218ENST00000625299 C11orf52Q96A22 123 aa8.94□□□□□ -0.98
PNKP-218ENST00000625299 IGLV4-69A0A075B6H9 119 aa8.93□□□□□ -0.98
PNKP-218ENST00000625299 SDHAF1A6NFY7 115 aa8.93□□□□□ -0.98
PNKP-218ENST00000625299 CTRLP40313 264 aa8.93□□□□□ -0.98
PNKP-218ENST00000625299 PMCHP20382 165 aa8.92□□□□□ -0.98
PNKP-218ENST00000625299 MALP21145 153 aa8.92□□□□□ -0.98
PNKP-218ENST00000625299 CD164L2Q6UWJ8 174 aa8.92□□□□□ -0.98
PNKP-218ENST00000625299 C9orf62Q8N4C0 152 aa8.92□□□□□ -0.98
PNKP-218ENST00000625299 DIRC1Q969H9 104 aa8.92□□□□□ -0.98
PNKP-218ENST00000625299 CAMK2N2Q96S95 79 aa8.92□□□□□ -0.98
PNKP-218ENST00000625299 MANBALQ9NQG1 85 aa8.92□□□□□ -0.98
PNKP-218ENST00000625299 SMLR1H3BR10 107 aa8.91□□□□□ -0.98
PNKP-218ENST00000625299 APOMO95445 188 aa8.91□□□□□ -0.98
PNKP-218ENST00000625299 EIF5AP63241 154 aaKnown RBP8.91□□□□□ -0.98
PNKP-218ENST00000625299 CCL20P78556 96 aa8.91□□□□□ -0.98
PNKP-218ENST00000625299 EIF5AL1Q6IS14 154 aaKnown RBP8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 384 ms