RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 C20orf78Q9BR46 151 aa13.46□□□□□ -0.25
UPF3A-211ENST00000618700 TRAV8-6A0A0B4J262 113 aa13.45□□□□□ -0.26
UPF3A-211ENST00000618700 TRBV27A0A0K0K1C4 114 aa13.45□□□□□ -0.26
UPF3A-211ENST00000618700 EIF4EBP3O60516 100 aaPredicted RBP13.45□□□□□ -0.26
UPF3A-211ENST00000618700 S100A1P23297 94 aa13.45□□□□□ -0.26
UPF3A-211ENST00000618700 RPL32P62910 135 aaKnown RBP13.45□□□□□ -0.26
UPF3A-211ENST00000618700 Q9H8V8 135 aa13.45□□□□□ -0.26
UPF3A-211ENST00000618700 LAMTOR2Q9Y2Q5 125 aa13.45□□□□□ -0.26
UPF3A-211ENST00000618700 COTL1Q14019 142 aa13.44□□□□□ -0.26
UPF3A-211ENST00000618700 IQCJQ1A5X6 159 aa13.44□□□□□ -0.26
UPF3A-211ENST00000618700 I3L3M4 83 aa13.43□□□□□ -0.26
UPF3A-211ENST00000618700 SIVA1O15304 175 aa13.43□□□□□ -0.26
UPF3A-211ENST00000618700 SCO1O75880 301 aa13.43□□□□□ -0.26
UPF3A-211ENST00000618700 DNAH10OSP0CZ25 163 aa13.43□□□□□ -0.26
UPF3A-211ENST00000618700 TRBV25-1A0A075B6N4 114 aa13.42□□□□□ -0.26
UPF3A-211ENST00000618700 IGHV1-24A0A0C4DH33 117 aa13.42□□□□□ -0.26
UPF3A-211ENST00000618700 KIAA1644Q3SXP7 199 aa13.42□□□□□ -0.26
UPF3A-211ENST00000618700 SMIM2Q9BVW6 85 aa13.42□□□□□ -0.26
UPF3A-211ENST00000618700 IGLV2-18A0A075B6J9 118 aa13.41□□□□□ -0.26
UPF3A-211ENST00000618700 LOC100996750A0A140TA64 210 aa13.41□□□□□ -0.26
UPF3A-211ENST00000618700 PRSS47A8MTI9 375 aa13.41□□□□□ -0.26
UPF3A-211ENST00000618700 VCYO14598 125 aa13.41□□□□□ -0.26
UPF3A-211ENST00000618700 TSHBP01222 138 aa13.41□□□□□ -0.26
UPF3A-211ENST00000618700 PMCHP20382 165 aa13.41□□□□□ -0.26
UPF3A-211ENST00000618700 LINC01556Q5JQF7 62 aa13.41□□□□□ -0.26
UPF3A-211ENST00000618700 DEFB104AQ8WTQ1 72 aa13.41□□□□□ -0.26
UPF3A-211ENST00000618700 KRTAP4-6Q9BYQ5 205 aa13.41□□□□□ -0.26
UPF3A-211ENST00000618700 TRAPPC1Q9Y5R8 145 aa13.41□□□□□ -0.26
UPF3A-211ENST00000618700 FABP9Q0Z7S8 132 aa13.4□□□□□ -0.26
UPF3A-211ENST00000618700 NIT1Q86X76 327 aa13.4□□□□□ -0.26
UPF3A-211ENST00000618700 NBDYA0A0U1RRE5 68 aa13.39□□□□□ -0.27
UPF3A-211ENST00000618700 COLCA2A8K830 154 aa13.39□□□□□ -0.27
UPF3A-211ENST00000618700 AMTP48728 403 aa13.39□□□□□ -0.27
UPF3A-211ENST00000618700 Q6ZR54 194 aa13.39□□□□□ -0.27
UPF3A-211ENST00000618700 ALKBH7Q9BT30 221 aaPredicted RBP13.39□□□□□ -0.27
UPF3A-211ENST00000618700 KRTAP1-5Q9BYS1 174 aa13.39□□□□□ -0.27
UPF3A-211ENST00000618700 KIR2DL4Q99706 377 aa13.38□□□□□ -0.27
UPF3A-211ENST00000618700 TMEM243Q9BU79 118 aa13.38□□□□□ -0.27
UPF3A-211ENST00000618700 MAP1LC3AQ9H492 121 aa13.38□□□□□ -0.27
UPF3A-211ENST00000618700 TTC32Q5I0X7 151 aa13.37□□□□□ -0.27
UPF3A-211ENST00000618700 Q8N3U1 123 aa13.37□□□□□ -0.27
UPF3A-211ENST00000618700 CHCHD5Q9BSY4 110 aa13.37□□□□□ -0.27
UPF3A-211ENST00000618700 CHCHD7Q9BUK0 85 aa13.37□□□□□ -0.27
UPF3A-211ENST00000618700 ESDP10768 282 aa13.36□□□□□ -0.27
UPF3A-211ENST00000618700 K7EP13 123 aa13.35□□□□□ -0.27
UPF3A-211ENST00000618700 PKIAP61925 76 aa13.35□□□□□ -0.27
UPF3A-211ENST00000618700 DNAH2Q9P225 4427 aa13.34□□□□□ -0.27
UPF3A-211ENST00000618700 M0R2N4 97 aa13.34□□□□□ -0.27
UPF3A-211ENST00000618700 TCAPO15273 167 aa13.34□□□□□ -0.27
UPF3A-211ENST00000618700 IGHV3-30P01768 117 aa13.34□□□□□ -0.27
UPF3A-211ENST00000618700 IGHV3-33P01772 117 aa13.34□□□□□ -0.27
UPF3A-211ENST00000618700 IGHV3-30-3P0DP02 117 aa13.34□□□□□ -0.27
UPF3A-211ENST00000618700 IGHV3-30-5P0DP03 117 aa13.34□□□□□ -0.27
UPF3A-211ENST00000618700 FCER1GP30273 86 aa13.34□□□□□ -0.27
UPF3A-211ENST00000618700 MPV17L2Q567V2 206 aa13.34□□□□□ -0.27
UPF3A-211ENST00000618700 Q8N8P6 123 aa13.34□□□□□ -0.27
UPF3A-211ENST00000618700 A0A087WX48 190 aa13.33□□□□□ -0.28
UPF3A-211ENST00000618700 LOC389332A0A1B0GUA5 103 aa13.33□□□□□ -0.28
UPF3A-211ENST00000618700 RAB5AP20339 215 aa13.33□□□□□ -0.28
UPF3A-211ENST00000618700 GAGE6Q13070 117 aa13.33□□□□□ -0.28
UPF3A-211ENST00000618700 CDPF1Q6NVV7 123 aa13.33□□□□□ -0.28
UPF3A-211ENST00000618700 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.32□□□□□ -0.28
UPF3A-211ENST00000618700 IGKV2-29A2NJV5 120 aaPredicted RBP13.32□□□□□ -0.28
UPF3A-211ENST00000618700 H7C423 109 aa13.32□□□□□ -0.28
UPF3A-211ENST00000618700 C10orf126Q8N4M7 172 aa13.32□□□□□ -0.28
UPF3A-211ENST00000618700 NXT2Q9NPJ8 142 aaKnown RBP13.32□□□□□ -0.28
UPF3A-211ENST00000618700 TRAV9-2A0A087WT02 112 aa13.31□□□□□ -0.28
UPF3A-211ENST00000618700 TMEM262E9PQX1 116 aa13.31□□□□□ -0.28
UPF3A-211ENST00000618700 IFI27P40305 119 aaPredicted RBP13.31□□□□□ -0.28
UPF3A-211ENST00000618700 RBX1P62877 108 aa13.31□□□□□ -0.28
UPF3A-211ENST00000618700 UBE2L6O14933 153 aa13.3□□□□□ -0.28
UPF3A-211ENST00000618700 FRAS1Q86XX4 4008 aa13.29□□□□□ -0.28
UPF3A-211ENST00000618700 A0A1B0GUV1 79 aa13.29□□□□□ -0.28
UPF3A-211ENST00000618700 IBA57-AS1B1ANH7 110 aa13.29□□□□□ -0.28
UPF3A-211ENST00000618700 K7EMI3 77 aa13.29□□□□□ -0.28
UPF3A-211ENST00000618700 TRGC2P03986 189 aa13.29□□□□□ -0.28
UPF3A-211ENST00000618700 Q8N976 141 aa13.29□□□□□ -0.28
UPF3A-211ENST00000618700 C18orf32Q8TCD1 76 aa13.29□□□□□ -0.28
UPF3A-211ENST00000618700 FGF6P10767 208 aa13.28□□□□□ -0.28
UPF3A-211ENST00000618700 BTF3P20290 206 aaKnown RBP13.28□□□□□ -0.28
UPF3A-211ENST00000618700 LAGE3Q14657 143 aa13.28□□□□□ -0.28
UPF3A-211ENST00000618700 MRPL52Q86TS9 123 aaKnown RBP13.28□□□□□ -0.28
UPF3A-211ENST00000618700 C20orf203Q8NBC4 194 aa13.28□□□□□ -0.28
UPF3A-211ENST00000618700 DNAH10Q8IVF4 4471 aa13.28□□□□□ -0.28
UPF3A-211ENST00000618700 LINC01546A6NGU7 62 aa13.27□□□□□ -0.29
UPF3A-211ENST00000618700 KLK12Q9UKR0 248 aa13.27□□□□□ -0.29
UPF3A-211ENST00000618700 IGLV4-60A0A075B6I1 120 aa13.26□□□□□ -0.29
UPF3A-211ENST00000618700 ZNF25P17030 456 aaPredicted RBP13.26□□□□□ -0.29
UPF3A-211ENST00000618700 PRSS3P2Q8NHM4 247 aa13.26□□□□□ -0.29
UPF3A-211ENST00000618700 ANGP03950 147 aaKnown RBP13.25□□□□□ -0.29
UPF3A-211ENST00000618700 ORMDL2Q53FV1 153 aa13.25□□□□□ -0.29
UPF3A-211ENST00000618700 C6orf223Q8N319 242 aa13.25□□□□□ -0.29
UPF3A-211ENST00000618700 RPL39P62891 51 aaKnown RBP13.24□□□□□ -0.29
UPF3A-211ENST00000618700 C1orf134Q5TEV5 83 aa13.24□□□□□ -0.29
UPF3A-211ENST00000618700 AMMECR1LQ6DCA0 310 aa13.24□□□□□ -0.29
UPF3A-211ENST00000618700 TMEM18Q96B42 140 aa13.24□□□□□ -0.29
UPF3A-211ENST00000618700 URB1-AS1Q96HZ7 61 aa13.24□□□□□ -0.29
UPF3A-211ENST00000618700 PRR34Q9NV39 138 aa13.24□□□□□ -0.29
UPF3A-211ENST00000618700 UBE2D4Q9Y2X8 147 aa13.24□□□□□ -0.29
UPF3A-211ENST00000618700 RNASEKQ6P5S7 137 aaKnown RBP13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 105.4 ms