RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 A0A1B0GV50 99 aa11.39□□□□□ -0.59
SHKBP1-227ENST00000602011 MGPP08493 103 aa11.39□□□□□ -0.59
SHKBP1-227ENST00000602011 SUMO4Q6EEV6 95 aa11.39□□□□□ -0.59
SHKBP1-227ENST00000602011 OR2D3Q8NGH3 330 aa11.39□□□□□ -0.59
SHKBP1-227ENST00000602011 UBE2L6O14933 153 aa11.38□□□□□ -0.59
SHKBP1-227ENST00000602011 CCL20P78556 96 aa11.38□□□□□ -0.59
SHKBP1-227ENST00000602011 TEX261Q6UWH6 196 aa11.38□□□□□ -0.59
SHKBP1-227ENST00000602011 TPPP3Q9BW30 176 aa11.38□□□□□ -0.59
SHKBP1-227ENST00000602011 IGLV10-54A0A075B6I4 117 aa11.37□□□□□ -0.59
SHKBP1-227ENST00000602011 C19orf71A6NCJ1 209 aa11.37□□□□□ -0.59
SHKBP1-227ENST00000602011 DPH3P1Q9H4G8 78 aa11.37□□□□□ -0.59
SHKBP1-227ENST00000602011 PDE6DO43924 150 aa11.36□□□□□ -0.59
SHKBP1-227ENST00000602011 GNG4P50150 75 aa11.36□□□□□ -0.59
SHKBP1-227ENST00000602011 COTL1Q14019 142 aa11.36□□□□□ -0.59
SHKBP1-227ENST00000602011 CENPWQ5EE01 88 aa11.36□□□□□ -0.59
SHKBP1-227ENST00000602011 GNG13Q9P2W3 67 aa11.36□□□□□ -0.59
SHKBP1-227ENST00000602011 PANO1I0J062 215 aa11.35□□□□□ -0.59
SHKBP1-227ENST00000602011 IFNA1P01562 189 aa11.35□□□□□ -0.59
SHKBP1-227ENST00000602011 TAGLN2P37802 199 aaKnown RBP11.35□□□□□ -0.59
SHKBP1-227ENST00000602011 IGLV4-60A0A075B6I1 120 aa11.34□□□□□ -0.59
SHKBP1-227ENST00000602011 A0A087WYN8 130 aa11.34□□□□□ -0.59
SHKBP1-227ENST00000602011 MT1HL1P0DM35 61 aa11.34□□□□□ -0.59
SHKBP1-227ENST00000602011 NTF3P20783 257 aa11.34□□□□□ -0.59
SHKBP1-227ENST00000602011 LYPD6BQ8NI32 183 aa11.34□□□□□ -0.59
SHKBP1-227ENST00000602011 C7orf33Q8WU49 177 aa11.34□□□□□ -0.59
SHKBP1-227ENST00000602011 H7C423 109 aa11.33□□□□□ -0.6
SHKBP1-227ENST00000602011 AMTP48728 403 aa11.33□□□□□ -0.6
SHKBP1-227ENST00000602011 LYZL1Q6UWQ5 148 aa11.33□□□□□ -0.6
SHKBP1-227ENST00000602011 SPACA4Q8TDM5 124 aa11.33□□□□□ -0.6
SHKBP1-227ENST00000602011 PLAC8Q9NZF1 115 aa11.33□□□□□ -0.6
SHKBP1-227ENST00000602011 NCR2O95944 276 aa11.32□□□□□ -0.6
SHKBP1-227ENST00000602011 RPS10P46783 165 aaKnown RBP11.32□□□□□ -0.6
SHKBP1-227ENST00000602011 MEF2BQ02080 365 aaPredicted RBP11.32□□□□□ -0.6
SHKBP1-227ENST00000602011 FAM210AQ96ND0 272 aa11.32□□□□□ -0.6
SHKBP1-227ENST00000602011 PKIGQ9Y2B9 76 aa11.32□□□□□ -0.6
SHKBP1-227ENST00000602011 RNF213Q63HN8 5207 aa11.32□□□□□ -0.6
SHKBP1-227ENST00000602011 SLPIP03973 132 aa11.31□□□□□ -0.6
SHKBP1-227ENST00000602011 CNFNQ9BYD5 112 aa11.31□□□□□ -0.6
SHKBP1-227ENST00000602011 MED9Q9NWA0 146 aa11.31□□□□□ -0.6
SHKBP1-227ENST00000602011 TNXBP22105 4242 aa11.3□□□□□ -0.6
SHKBP1-227ENST00000602011 SMIM15Q7Z3B0 74 aa11.3□□□□□ -0.6
SHKBP1-227ENST00000602011 RAB19A4D1S5 217 aa11.29□□□□□ -0.6
SHKBP1-227ENST00000602011 NDUFS6O75380 124 aaKnown RBP11.29□□□□□ -0.6
SHKBP1-227ENST00000602011 CTRLP40313 264 aa11.29□□□□□ -0.6
SHKBP1-227ENST00000602011 TWIST1Q15672 202 aa11.29□□□□□ -0.6
SHKBP1-227ENST00000602011 GFRA4Q9GZZ7 299 aa11.29□□□□□ -0.6
SHKBP1-227ENST00000602011 LINC00474Q9P2X8 69 aa11.29□□□□□ -0.6
SHKBP1-227ENST00000602011 GAGE12HA6NDE8 117 aa11.28□□□□□ -0.6
SHKBP1-227ENST00000602011 RAB14P61106 215 aa11.28□□□□□ -0.6
SHKBP1-227ENST00000602011 AMMECR1LQ6DCA0 310 aa11.28□□□□□ -0.6
SHKBP1-227ENST00000602011 LRP2P98164 4655 aa11.27□□□□□ -0.6
SHKBP1-227ENST00000602011 BCL2P10415 239 aa11.27□□□□□ -0.61
SHKBP1-227ENST00000602011 NUDT10Q8NFP7 164 aa11.27□□□□□ -0.61
SHKBP1-227ENST00000602011 NUDT11Q96G61 164 aa11.27□□□□□ -0.61
SHKBP1-227ENST00000602011 ZNF25P17030 456 aaPredicted RBP11.26□□□□□ -0.61
SHKBP1-227ENST00000602011 COX6A2Q02221 97 aa11.26□□□□□ -0.61
SHKBP1-227ENST00000602011 C15orf56Q8N910 161 aa11.26□□□□□ -0.61
SHKBP1-227ENST00000602011 CHTF8P0CG12 524 aa11.25□□□□□ -0.61
SHKBP1-227ENST00000602011 GATD1Q8NB37 220 aa11.25□□□□□ -0.61
SHKBP1-227ENST00000602011 CHCHD10Q8WYQ3 142 aaPredicted RBP11.25□□□□□ -0.61
SHKBP1-227ENST00000602011 TRBV20OR9-2A0A075B6H5 130 aa11.24□□□□□ -0.61
SHKBP1-227ENST00000602011 GVQW2A0A096LPI5 108 aaPredicted RBP11.24□□□□□ -0.61
SHKBP1-227ENST00000602011 PHOX2AO14813 284 aa11.24□□□□□ -0.61
SHKBP1-227ENST00000602011 RPP21Q9H633 154 aaKnown RBP11.24□□□□□ -0.61
SHKBP1-227ENST00000602011 APCSP02743 223 aa11.23□□□□□ -0.61
SHKBP1-227ENST00000602011 MAJINQ3KP22 176 aa11.23□□□□□ -0.61
SHKBP1-227ENST00000602011 RNASEKQ6P5S7 137 aaKnown RBP11.23□□□□□ -0.61
SHKBP1-227ENST00000602011 GTSF1Q8WW33 167 aa11.23□□□□□ -0.61
SHKBP1-227ENST00000602011 BTF3L4Q96K17 158 aa11.23□□□□□ -0.61
SHKBP1-227ENST00000602011 LINC01600Q96MT4 127 aa11.23□□□□□ -0.61
SHKBP1-227ENST00000602011 EIF5A2Q9GZV4 153 aaKnown RBP11.23□□□□□ -0.61
SHKBP1-227ENST00000602011 TMEM250H0YL14 139 aa11.22□□□□□ -0.61
SHKBP1-227ENST00000602011 ODF1Q14990 250 aa11.22□□□□□ -0.61
SHKBP1-227ENST00000602011 OR5A1Q8NGJ0 315 aa11.22□□□□□ -0.61
SHKBP1-227ENST00000602011 TMEM101Q96IK0 257 aa11.22□□□□□ -0.61
SHKBP1-227ENST00000602011 SMDT1Q9H4I9 107 aa11.22□□□□□ -0.61
SHKBP1-227ENST00000602011 IGKV3OR2-268A0A0C4DH90 116 aa11.21□□□□□ -0.61
SHKBP1-227ENST00000602011 FGF6P10767 208 aa11.21□□□□□ -0.61
SHKBP1-227ENST00000602011 STPG4Q8N801 248 aa11.21□□□□□ -0.61
SHKBP1-227ENST00000602011 PRSS3P2Q8NHM4 247 aa11.21□□□□□ -0.61
SHKBP1-227ENST00000602011 TRBV6-5A0A0K0K1A5 114 aa11.2□□□□□ -0.62
SHKBP1-227ENST00000602011 SDHAF1A6NFY7 115 aa11.2□□□□□ -0.62
SHKBP1-227ENST00000602011 I3L3M4 83 aa11.2□□□□□ -0.62
SHKBP1-227ENST00000602011 IFITM2Q01629 132 aa11.2□□□□□ -0.62
SHKBP1-227ENST00000602011 PEA15Q15121 130 aa11.2□□□□□ -0.62
SHKBP1-227ENST00000602011 HIGD2BQ4VC39 106 aa11.2□□□□□ -0.62
SHKBP1-227ENST00000602011 CLLU1Q5K131 121 aa11.2□□□□□ -0.62
SHKBP1-227ENST00000602011 IGHV1-58A0A0C4DH39 117 aa11.19□□□□□ -0.62
SHKBP1-227ENST00000602011 A8MWL6 223 aa11.19□□□□□ -0.62
SHKBP1-227ENST00000602011 PMCHP20382 165 aa11.19□□□□□ -0.62
SHKBP1-227ENST00000602011 SPINK6Q6UWN8 80 aa11.19□□□□□ -0.62
SHKBP1-227ENST00000602011 OCC1Q8TAD7 63 aa11.19□□□□□ -0.62
SHKBP1-227ENST00000602011 TRAV26-2A0A0B4J265 109 aa11.18□□□□□ -0.62
SHKBP1-227ENST00000602011 IGKV2-24A0A0C4DH68 120 aa11.18□□□□□ -0.62
SHKBP1-227ENST00000602011 FOXA3P55318 350 aaPredicted RBP11.18□□□□□ -0.62
SHKBP1-227ENST00000602011 PRR3P79522 188 aaKnown RBP11.18□□□□□ -0.62
SHKBP1-227ENST00000602011 FOXI1Q12951 378 aa11.18□□□□□ -0.62
SHKBP1-227ENST00000602011 REG3GQ6UW15 175 aa11.18□□□□□ -0.62
SHKBP1-227ENST00000602011 RNASE7Q9H1E1 156 aaKnown RBP11.18□□□□□ -0.62
SHKBP1-227ENST00000602011 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms