RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 FOXA3P55318 350 aaPredicted RBP8.06□□□□□ -1.12
TRIM28-212ENST00000597995 MIAQ16674 131 aa8.06□□□□□ -1.12
TRIM28-212ENST00000597995 KRTAP26-1Q6PEX3 210 aa8.06□□□□□ -1.12
TRIM28-212ENST00000597995 RASL11AQ6T310 242 aa8.06□□□□□ -1.12
TRIM28-212ENST00000597995 C9orf163Q8N9P6 203 aa8.06□□□□□ -1.12
TRIM28-212ENST00000597995 PRR34Q9NV39 138 aa8.06□□□□□ -1.12
TRIM28-212ENST00000597995 TRBV25-1A0A075B6N4 114 aa8.05□□□□□ -1.12
TRIM28-212ENST00000597995 IGHV1-24A0A0C4DH33 117 aa8.05□□□□□ -1.12
TRIM28-212ENST00000597995 H7C1H1 209 aa8.05□□□□□ -1.12
TRIM28-212ENST00000597995 PRSS1P07477 247 aa8.05□□□□□ -1.12
TRIM28-212ENST00000597995 HNRNPA3P51991 378 aaKnown RBP8.05□□□□□ -1.12
TRIM28-212ENST00000597995 TWIST1Q15672 202 aa8.05□□□□□ -1.12
TRIM28-212ENST00000597995 FAM231DQ6ZW35 169 aa8.05□□□□□ -1.12
TRIM28-212ENST00000597995 GATD1Q8NB37 220 aa8.05□□□□□ -1.12
TRIM28-212ENST00000597995 NIT2Q9NQR4 276 aa8.05□□□□□ -1.12
TRIM28-212ENST00000597995 TRAV26-2A0A0B4J265 109 aa8.04□□□□□ -1.12
TRIM28-212ENST00000597995 HLA-DQA1P01909 254 aa8.04□□□□□ -1.12
TRIM28-212ENST00000597995 CLPSL2Q6UWE3 100 aa8.04□□□□□ -1.12
TRIM28-212ENST00000597995 LINC00269Q8N2A0 174 aa8.04□□□□□ -1.12
TRIM28-212ENST00000597995 C20orf203Q8NBC4 194 aa8.04□□□□□ -1.12
TRIM28-212ENST00000597995 EIF5A2Q9GZV4 153 aaKnown RBP8.04□□□□□ -1.12
TRIM28-212ENST00000597995 GFRA4Q9GZZ7 299 aa8.04□□□□□ -1.12
TRIM28-212ENST00000597995 IGLV4-60A0A075B6I1 120 aa8.03□□□□□ -1.12
TRIM28-212ENST00000597995 GATCO43716 136 aaKnown RBP8.03□□□□□ -1.12
TRIM28-212ENST00000597995 SRP19P09132 144 aaKnown RBP8.03□□□□□ -1.12
TRIM28-212ENST00000597995 SDIM1Q6ZPB5 146 aa8.03□□□□□ -1.12
TRIM28-212ENST00000597995 Q6ZRU5 148 aa8.03□□□□□ -1.12
TRIM28-212ENST00000597995 FAM210AQ96ND0 272 aa8.03□□□□□ -1.12
TRIM28-212ENST00000597995 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.03□□□□□ -1.12
TRIM28-212ENST00000597995 NDUFS6O75380 124 aaKnown RBP8.02□□□□□ -1.13
TRIM28-212ENST00000597995 MT1HL1P0DM35 61 aa8.02□□□□□ -1.13
TRIM28-212ENST00000597995 LINC01551Q86U37 167 aa8.02□□□□□ -1.13
TRIM28-212ENST00000597995 CLRN3Q8NCR9 226 aa8.02□□□□□ -1.13
TRIM28-212ENST00000597995 RPL39LQ96EH5 51 aaKnown RBP8.02□□□□□ -1.13
TRIM28-212ENST00000597995 PGLYRP4Q96LB8 373 aa8.02□□□□□ -1.13
TRIM28-212ENST00000597995 GAS8-AS1O95177 125 aa8.01□□□□□ -1.13
TRIM28-212ENST00000597995 CT83Q5H943 113 aa8.01□□□□□ -1.13
TRIM28-212ENST00000597995 SMIM7Q9BQ49 75 aa8.01□□□□□ -1.13
TRIM28-212ENST00000597995 TMEM243Q9BU79 118 aa8.01□□□□□ -1.13
TRIM28-212ENST00000597995 A0A1B0GUV1 79 aa8□□□□□ -1.13
TRIM28-212ENST00000597995 A8MWL6 223 aa8□□□□□ -1.13
TRIM28-212ENST00000597995 C9JQL5 133 aa8□□□□□ -1.13
TRIM28-212ENST00000597995 REG3AQ06141 175 aa8□□□□□ -1.13
TRIM28-212ENST00000597995 CIRBPQ14011 172 aaKnown RBP8□□□□□ -1.13
TRIM28-212ENST00000597995 IGLV10-54A0A075B6I4 117 aa7.99□□□□□ -1.13
TRIM28-212ENST00000597995 ZNF727A8MUV8 499 aa7.99□□□□□ -1.13
TRIM28-212ENST00000597995 PANO1I0J062 215 aa7.99□□□□□ -1.13
TRIM28-212ENST00000597995 CNBPP62633 177 aaKnown RBP7.99□□□□□ -1.13
TRIM28-212ENST00000597995 HIGD1CA8MV81 97 aa7.98□□□□□ -1.13
TRIM28-212ENST00000597995 AMTP48728 403 aa7.98□□□□□ -1.13
TRIM28-212ENST00000597995 SRSF3P84103 164 aaKnown RBP7.98□□□□□ -1.13
TRIM28-212ENST00000597995 COTL1Q14019 142 aa7.98□□□□□ -1.13
TRIM28-212ENST00000597995 TSKUQ8WUA8 353 aa7.98□□□□□ -1.13
TRIM28-212ENST00000597995 RNF185Q96GF1 192 aa7.98□□□□□ -1.13
TRIM28-212ENST00000597995 OSTCQ9NRP0 149 aa7.98□□□□□ -1.13
TRIM28-212ENST00000597995 V9GYV3 84 aa7.98□□□□□ -1.13
TRIM28-212ENST00000597995 TRAV8-4A0A0B4J246 113 aa7.97□□□□□ -1.13
TRIM28-212ENST00000597995 SMIM15Q7Z3B0 74 aa7.97□□□□□ -1.13
TRIM28-212ENST00000597995 BORCS7Q96B45 105 aa7.97□□□□□ -1.13
TRIM28-212ENST00000597995 TRBV6-5A0A0K0K1A5 114 aa7.96□□□□□ -1.14
TRIM28-212ENST00000597995 A0A1B0GUT8 65 aa7.96□□□□□ -1.14
TRIM28-212ENST00000597995 FAM231BA6NCW3 169 aa7.96□□□□□ -1.14
TRIM28-212ENST00000597995 SDHAF1A6NFY7 115 aa7.96□□□□□ -1.14
TRIM28-212ENST00000597995 RPL23P62829 140 aaKnown RBP7.96□□□□□ -1.14
TRIM28-212ENST00000597995 TEX261Q6UWH6 196 aa7.96□□□□□ -1.14
TRIM28-212ENST00000597995 ISOC2Q96AB3 205 aa7.96□□□□□ -1.14
TRIM28-212ENST00000597995 IGHV3-64A0A075B6Q5 118 aa7.95□□□□□ -1.14
TRIM28-212ENST00000597995 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.95□□□□□ -1.14
TRIM28-212ENST00000597995 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.95□□□□□ -1.14
TRIM28-212ENST00000597995 IGKV2-29A2NJV5 120 aaPredicted RBP7.95□□□□□ -1.14
TRIM28-212ENST00000597995 UBE2L6O14933 153 aa7.95□□□□□ -1.14
TRIM28-212ENST00000597995 RAB4AP20338 218 aa7.95□□□□□ -1.14
TRIM28-212ENST00000597995 RPS10P46783 165 aaKnown RBP7.95□□□□□ -1.14
TRIM28-212ENST00000597995 NUP35Q8NFH5 326 aa7.95□□□□□ -1.14
TRIM28-212ENST00000597995 DPH3Q96FX2 82 aa7.95□□□□□ -1.14
TRIM28-212ENST00000597995 TMEM191AQ9H0A3 160 aa7.95□□□□□ -1.14
TRIM28-212ENST00000597995 AP5S1Q9NUS5 200 aa7.95□□□□□ -1.14
TRIM28-212ENST00000597995 A0A087WYN8 130 aa7.94□□□□□ -1.14
TRIM28-212ENST00000597995 hDV102S1A0JD36 115 aa7.94□□□□□ -1.14
TRIM28-212ENST00000597995 NCR2O95944 276 aa7.94□□□□□ -1.14
TRIM28-212ENST00000597995 SLPIP03973 132 aa7.94□□□□□ -1.14
TRIM28-212ENST00000597995 TMEM241Q24JQ0 296 aa7.94□□□□□ -1.14
TRIM28-212ENST00000597995 AMN1Q8IY45 258 aa7.94□□□□□ -1.14
TRIM28-212ENST00000597995 TSHBP01222 138 aa7.93□□□□□ -1.14
TRIM28-212ENST00000597995 ESDP10768 282 aa7.93□□□□□ -1.14
TRIM28-212ENST00000597995 POLR2KP53803 58 aaKnown RBP7.93□□□□□ -1.14
TRIM28-212ENST00000597995 FAM74A3Q4VXF1 159 aa7.93□□□□□ -1.14
TRIM28-212ENST00000597995 SPACA4Q8TDM5 124 aa7.93□□□□□ -1.14
TRIM28-212ENST00000597995 SMKR1H3BMG3 65 aa7.92□□□□□ -1.14
TRIM28-212ENST00000597995 I3L3M4 83 aa7.92□□□□□ -1.14
TRIM28-212ENST00000597995 APCSP02743 223 aa7.92□□□□□ -1.14
TRIM28-212ENST00000597995 FGF6P10767 208 aa7.92□□□□□ -1.14
TRIM28-212ENST00000597995 PMCHP20382 165 aa7.92□□□□□ -1.14
TRIM28-212ENST00000597995 TMEM242Q9NWH2 141 aa7.92□□□□□ -1.14
TRIM28-212ENST00000597995 PLAC8Q9NZF1 115 aa7.92□□□□□ -1.14
TRIM28-212ENST00000597995 IGKV3OR2-268A0A0C4DH90 116 aa7.91□□□□□ -1.14
TRIM28-212ENST00000597995 GAGE12HA6NDE8 117 aa7.91□□□□□ -1.14
TRIM28-212ENST00000597995 H7C423 109 aa7.91□□□□□ -1.14
TRIM28-212ENST00000597995 CHTF8P0CG12 524 aa7.91□□□□□ -1.14
TRIM28-212ENST00000597995 PEA15Q15121 130 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms