RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 DPH3P1Q9H4G8 78 aa8.76□□□□□ -1.01
TRIM28-211ENST00000597968 AP5S1Q9NUS5 200 aa8.76□□□□□ -1.01
TRIM28-211ENST00000597968 C20orf203Q8NBC4 194 aa8.75□□□□□ -1.01
TRIM28-211ENST00000597968 CNFNQ9BYD5 112 aa8.75□□□□□ -1.01
TRIM28-211ENST00000597968 UBE2L6O14933 153 aa8.74□□□□□ -1.01
TRIM28-211ENST00000597968 LYZL1Q6UWQ5 148 aa8.74□□□□□ -1.01
TRIM28-211ENST00000597968 NUDT10Q8NFP7 164 aa8.74□□□□□ -1.01
TRIM28-211ENST00000597968 NUDT11Q96G61 164 aa8.74□□□□□ -1.01
TRIM28-211ENST00000597968 FAM210AQ96ND0 272 aa8.74□□□□□ -1.01
TRIM28-211ENST00000597968 PKHD1L1Q86WI1 4243 aa8.74□□□□□ -1.01
TRIM28-211ENST00000597968 NTF3P20783 257 aa8.73□□□□□ -1.01
TRIM28-211ENST00000597968 CTRLP40313 264 aa8.73□□□□□ -1.01
TRIM28-211ENST00000597968 NKX2-5P52952 324 aaPredicted RBP8.73□□□□□ -1.01
TRIM28-211ENST00000597968 COTL1Q14019 142 aa8.73□□□□□ -1.01
TRIM28-211ENST00000597968 CFAP161Q6P656 301 aa8.73□□□□□ -1.01
TRIM28-211ENST00000597968 CLPSL2Q6UWE3 100 aa8.73□□□□□ -1.01
TRIM28-211ENST00000597968 Q6ZRU5 148 aa8.73□□□□□ -1.01
TRIM28-211ENST00000597968 IGHV3-64A0A075B6Q5 118 aa8.72□□□□□ -1.01
TRIM28-211ENST00000597968 hDV102S1A0JD36 115 aa8.72□□□□□ -1.01
TRIM28-211ENST00000597968 H7C423 109 aa8.72□□□□□ -1.01
TRIM28-211ENST00000597968 K7EN84 100 aa8.72□□□□□ -1.01
TRIM28-211ENST00000597968 NCR2O95944 276 aa8.72□□□□□ -1.01
TRIM28-211ENST00000597968 TEX261Q6UWH6 196 aa8.72□□□□□ -1.01
TRIM28-211ENST00000597968 ALKAL2Q6UX46 152 aa8.72□□□□□ -1.01
TRIM28-211ENST00000597968 AKAP14Q86UN6 197 aa8.72□□□□□ -1.01
TRIM28-211ENST00000597968 OCC1Q8TAD7 63 aa8.72□□□□□ -1.01
TRIM28-211ENST00000597968 RNASE7Q9H1E1 156 aaKnown RBP8.72□□□□□ -1.01
TRIM28-211ENST00000597968 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.72□□□□□ -1.01
TRIM28-211ENST00000597968 IGLV4-60A0A075B6I1 120 aa8.71□□□□□ -1.02
TRIM28-211ENST00000597968 IGLV10-54A0A075B6I4 117 aa8.71□□□□□ -1.02
TRIM28-211ENST00000597968 AMTP48728 403 aa8.7□□□□□ -1.02
TRIM28-211ENST00000597968 SMIM15Q7Z3B0 74 aa8.7□□□□□ -1.02
TRIM28-211ENST00000597968 TWIST1Q15672 202 aa8.69□□□□□ -1.02
TRIM28-211ENST00000597968 RPP21Q9H633 154 aaKnown RBP8.69□□□□□ -1.02
TRIM28-211ENST00000597968 PLA2G2DQ9UNK4 145 aa8.69□□□□□ -1.02
TRIM28-211ENST00000597968 PKIGQ9Y2B9 76 aa8.69□□□□□ -1.02
TRIM28-211ENST00000597968 CEBPGP53567 150 aa8.68□□□□□ -1.02
TRIM28-211ENST00000597968 FOXA3P55318 350 aaPredicted RBP8.68□□□□□ -1.02
TRIM28-211ENST00000597968 GTSF1Q8WW33 167 aa8.68□□□□□ -1.02
TRIM28-211ENST00000597968 TRAV26-2A0A0B4J265 109 aa8.67□□□□□ -1.02
TRIM28-211ENST00000597968 PANO1I0J062 215 aa8.67□□□□□ -1.02
TRIM28-211ENST00000597968 ZNF25P17030 456 aaPredicted RBP8.67□□□□□ -1.02
TRIM28-211ENST00000597968 SPACA4Q8TDM5 124 aa8.67□□□□□ -1.02
TRIM28-211ENST00000597968 PLAC8Q9NZF1 115 aa8.67□□□□□ -1.02
TRIM28-211ENST00000597968 A0A087WYN8 130 aa8.66□□□□□ -1.02
TRIM28-211ENST00000597968 TMEM250H0YL14 139 aa8.66□□□□□ -1.02
TRIM28-211ENST00000597968 SLPIP03973 132 aa8.66□□□□□ -1.02
TRIM28-211ENST00000597968 RPS10P46783 165 aaKnown RBP8.66□□□□□ -1.02
TRIM28-211ENST00000597968 BLOC1S1P78537 153 aa8.66□□□□□ -1.02
TRIM28-211ENST00000597968 GATD1Q8NB37 220 aa8.66□□□□□ -1.02
TRIM28-211ENST00000597968 LYPD6BQ8NI32 183 aa8.66□□□□□ -1.02
TRIM28-211ENST00000597968 C7orf33Q8WU49 177 aa8.66□□□□□ -1.02
TRIM28-211ENST00000597968 DPH3Q96FX2 82 aa8.66□□□□□ -1.02
TRIM28-211ENST00000597968 GFRA4Q9GZZ7 299 aa8.66□□□□□ -1.02
TRIM28-211ENST00000597968 A0A1B0GVG6 124 aa8.65□□□□□ -1.02
TRIM28-211ENST00000597968 NDUFS6O75380 124 aaKnown RBP8.65□□□□□ -1.02
TRIM28-211ENST00000597968 APCSP02743 223 aa8.65□□□□□ -1.02
TRIM28-211ENST00000597968 HNRNPA3P51991 378 aaKnown RBP8.65□□□□□ -1.02
TRIM28-211ENST00000597968 AMMECR1LQ6DCA0 310 aa8.65□□□□□ -1.02
TRIM28-211ENST00000597968 FAM231DQ6ZW35 169 aa8.65□□□□□ -1.02
TRIM28-211ENST00000597968 C15orf56Q8N910 161 aa8.65□□□□□ -1.02
TRIM28-211ENST00000597968 LINC00474Q9P2X8 69 aa8.65□□□□□ -1.02
TRIM28-211ENST00000597968 UBR4Q5T4S7 5183 aa8.64□□□□□ -1.03
TRIM28-211ENST00000597968 TRBV6-5A0A0K0K1A5 114 aa8.64□□□□□ -1.03
TRIM28-211ENST00000597968 GAGE12HA6NDE8 117 aa8.64□□□□□ -1.03
TRIM28-211ENST00000597968 A8MWL6 223 aa8.64□□□□□ -1.03
TRIM28-211ENST00000597968 GATCO43716 136 aaKnown RBP8.64□□□□□ -1.03
TRIM28-211ENST00000597968 CT83Q5H943 113 aa8.64□□□□□ -1.03
TRIM28-211ENST00000597968 RPL39LQ96EH5 51 aaKnown RBP8.64□□□□□ -1.03
TRIM28-211ENST00000597968 GVQW2A0A096LPI5 108 aaPredicted RBP8.63□□□□□ -1.03
TRIM28-211ENST00000597968 SDHAF1A6NFY7 115 aa8.63□□□□□ -1.03
TRIM28-211ENST00000597968 CHCHD10Q8WYQ3 142 aaPredicted RBP8.63□□□□□ -1.03
TRIM28-211ENST00000597968 BTF3L4Q96K17 158 aa8.63□□□□□ -1.03
TRIM28-211ENST00000597968 I3L3M4 83 aa8.62□□□□□ -1.03
TRIM28-211ENST00000597968 GAS8-AS1O95177 125 aa8.62□□□□□ -1.03
TRIM28-211ENST00000597968 FGF6P10767 208 aa8.62□□□□□ -1.03
TRIM28-211ENST00000597968 OR5A1Q8NGJ0 315 aa8.62□□□□□ -1.03
TRIM28-211ENST00000597968 TMEM101Q96IK0 257 aa8.62□□□□□ -1.03
TRIM28-211ENST00000597968 EIF5A2Q9GZV4 153 aaKnown RBP8.62□□□□□ -1.03
TRIM28-211ENST00000597968 FAM231BA6NCW3 169 aa8.61□□□□□ -1.03
TRIM28-211ENST00000597968 MT1HL1P0DM35 61 aa8.61□□□□□ -1.03
TRIM28-211ENST00000597968 COX6A2Q02221 97 aa8.61□□□□□ -1.03
TRIM28-211ENST00000597968 RNASEKQ6P5S7 137 aaKnown RBP8.61□□□□□ -1.03
TRIM28-211ENST00000597968 BORCS7Q96B45 105 aa8.61□□□□□ -1.03
TRIM28-211ENST00000597968 IGKV3OR2-268A0A0C4DH90 116 aa8.6□□□□□ -1.03
TRIM28-211ENST00000597968 SMIM7Q9BQ49 75 aa8.6□□□□□ -1.03
TRIM28-211ENST00000597968 CCL25O15444 150 aa8.59□□□□□ -1.03
TRIM28-211ENST00000597968 SRP19P09132 144 aaKnown RBP8.59□□□□□ -1.03
TRIM28-211ENST00000597968 CHTF8P0CG12 524 aa8.59□□□□□ -1.03
TRIM28-211ENST00000597968 ESDP10768 282 aa8.59□□□□□ -1.03
TRIM28-211ENST00000597968 PMCHP20382 165 aa8.59□□□□□ -1.03
TRIM28-211ENST00000597968 SMAGPQ0VAQ4 97 aa8.59□□□□□ -1.03
TRIM28-211ENST00000597968 FOXI1Q12951 378 aa8.59□□□□□ -1.03
TRIM28-211ENST00000597968 MRPL52Q86TS9 123 aaKnown RBP8.59□□□□□ -1.03
TRIM28-211ENST00000597968 LINC01551Q86U37 167 aa8.59□□□□□ -1.03
TRIM28-211ENST00000597968 MRAP2Q96G30 205 aa8.59□□□□□ -1.03
TRIM28-211ENST00000597968 TMEM191AQ9H0A3 160 aa8.59□□□□□ -1.03
TRIM28-211ENST00000597968 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.58□□□□□ -1.04
TRIM28-211ENST00000597968 IGHV1-58A0A0C4DH39 117 aa8.58□□□□□ -1.04
TRIM28-211ENST00000597968 IGKV2-29A2NJV5 120 aaPredicted RBP8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms