RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 SMIM15Q7Z3B0 74 aa9.81□□□□□ -0.84
LIG1-215ENST00000597901 IGLV4-60A0A075B6I1 120 aa9.8□□□□□ -0.84
LIG1-215ENST00000597901 NDUFS6O75380 124 aaKnown RBP9.8□□□□□ -0.84
LIG1-215ENST00000597901 PRSS1P07477 247 aa9.8□□□□□ -0.84
LIG1-215ENST00000597901 COTL1Q14019 142 aa9.8□□□□□ -0.84
LIG1-215ENST00000597901 FAM210AQ96ND0 272 aa9.8□□□□□ -0.84
LIG1-215ENST00000597901 PLA2G1BP04054 148 aaKnown RBP9.79□□□□□ -0.84
LIG1-215ENST00000597901 SRP19P09132 144 aaKnown RBP9.79□□□□□ -0.84
LIG1-215ENST00000597901 AMTP48728 403 aa9.79□□□□□ -0.84
LIG1-215ENST00000597901 DGAT2L7PQ6IED9 249 aa9.79□□□□□ -0.84
LIG1-215ENST00000597901 SMIM7Q9BQ49 75 aa9.79□□□□□ -0.84
LIG1-215ENST00000597901 CHAC1Q9BUX1 264 aa9.79□□□□□ -0.84
LIG1-215ENST00000597901 GFRA4Q9GZZ7 299 aa9.79□□□□□ -0.84
LIG1-215ENST00000597901 VPS13BQ7Z7G8 4022 aa9.79□□□□□ -0.84
LIG1-215ENST00000597901 IGLV10-54A0A075B6I4 117 aa9.78□□□□□ -0.84
LIG1-215ENST00000597901 TRAV8-4A0A0B4J246 113 aa9.78□□□□□ -0.84
LIG1-215ENST00000597901 ZNF727A8MUV8 499 aa9.78□□□□□ -0.84
LIG1-215ENST00000597901 UBE2L6O14933 153 aa9.78□□□□□ -0.84
LIG1-215ENST00000597901 CT83Q5H943 113 aa9.78□□□□□ -0.84
LIG1-215ENST00000597901 TEX261Q6UWH6 196 aa9.78□□□□□ -0.84
LIG1-215ENST00000597901 SCXQ7RTU7 201 aa9.78□□□□□ -0.84
LIG1-215ENST00000597901 LINC01551Q86U37 167 aa9.78□□□□□ -0.84
LIG1-215ENST00000597901 RPL39LQ96EH5 51 aaKnown RBP9.78□□□□□ -0.84
LIG1-215ENST00000597901 LINC00528Q8N1L1 170 aa9.77□□□□□ -0.85
LIG1-215ENST00000597901 OSTCQ9NRP0 149 aa9.77□□□□□ -0.85
LIG1-215ENST00000597901 J3QL48 77 aa9.76□□□□□ -0.85
LIG1-215ENST00000597901 CLRN3Q8NCR9 226 aa9.76□□□□□ -0.85
LIG1-215ENST00000597901 CIRBP-AS1Q8TBR5 109 aa9.76□□□□□ -0.85
LIG1-215ENST00000597901 TSKUQ8WUA8 353 aa9.76□□□□□ -0.85
LIG1-215ENST00000597901 FAM231BA6NCW3 169 aa9.75□□□□□ -0.85
LIG1-215ENST00000597901 NCR2O95944 276 aa9.75□□□□□ -0.85
LIG1-215ENST00000597901 C9orf163Q8N9P6 203 aa9.75□□□□□ -0.85
LIG1-215ENST00000597901 BORCS7Q96B45 105 aa9.75□□□□□ -0.85
LIG1-215ENST00000597901 SRRM2Q9UQ35 2752 aaKnown RBP9.74□□□□□ -0.85
LIG1-215ENST00000597901 TRBV6-5A0A0K0K1A5 114 aa9.74□□□□□ -0.85
LIG1-215ENST00000597901 A0A1B0GUT8 65 aa9.74□□□□□ -0.85
LIG1-215ENST00000597901 SDHAF1A6NFY7 115 aa9.74□□□□□ -0.85
LIG1-215ENST00000597901 HIGD1CA8MV81 97 aa9.74□□□□□ -0.85
LIG1-215ENST00000597901 GAS8-AS1O95177 125 aa9.74□□□□□ -0.85
LIG1-215ENST00000597901 TMEM241Q24JQ0 296 aa9.74□□□□□ -0.85
LIG1-215ENST00000597901 I3L3M4 83 aa9.73□□□□□ -0.85
LIG1-215ENST00000597901 PMCHP20382 165 aa9.73□□□□□ -0.85
LIG1-215ENST00000597901 TMEM191AQ9H0A3 160 aa9.73□□□□□ -0.85
LIG1-215ENST00000597901 C9JQL5 133 aa9.72□□□□□ -0.85
LIG1-215ENST00000597901 H7C423 109 aa9.72□□□□□ -0.85
LIG1-215ENST00000597901 RAB4AP20338 218 aa9.72□□□□□ -0.85
LIG1-215ENST00000597901 FAM74A3Q4VXF1 159 aa9.72□□□□□ -0.85
LIG1-215ENST00000597901 AMMECR1LQ6DCA0 310 aa9.72□□□□□ -0.85
LIG1-215ENST00000597901 SDIM1Q6ZPB5 146 aa9.72□□□□□ -0.85
LIG1-215ENST00000597901 RNF185Q96GF1 192 aa9.72□□□□□ -0.85
LIG1-215ENST00000597901 V9GYV3 84 aa9.72□□□□□ -0.85
LIG1-215ENST00000597901 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.71□□□□□ -0.86
LIG1-215ENST00000597901 hDV102S1A0JD36 115 aa9.71□□□□□ -0.86
LIG1-215ENST00000597901 IGKV2-29A2NJV5 120 aaPredicted RBP9.71□□□□□ -0.86
LIG1-215ENST00000597901 APCSP02743 223 aa9.71□□□□□ -0.86
LIG1-215ENST00000597901 RNASEKQ6P5S7 137 aaKnown RBP9.71□□□□□ -0.86
LIG1-215ENST00000597901 NUP35Q8NFH5 326 aa9.71□□□□□ -0.86
LIG1-215ENST00000597901 ISOC2Q96AB3 205 aa9.71□□□□□ -0.86
LIG1-215ENST00000597901 ST20Q9HBF5 79 aa9.71□□□□□ -0.86
LIG1-215ENST00000597901 IGKV3OR2-268A0A0C4DH90 116 aa9.7□□□□□ -0.86
LIG1-215ENST00000597901 GAGE12HA6NDE8 117 aa9.7□□□□□ -0.86
LIG1-215ENST00000597901 SLPIP03973 132 aa9.7□□□□□ -0.86
LIG1-215ENST00000597901 FGF6P10767 208 aa9.7□□□□□ -0.86
LIG1-215ENST00000597901 POLR2KP53803 58 aaKnown RBP9.7□□□□□ -0.86
LIG1-215ENST00000597901 RPL23P62829 140 aaKnown RBP9.7□□□□□ -0.86
LIG1-215ENST00000597901 SRSF3P84103 164 aaKnown RBP9.7□□□□□ -0.86
LIG1-215ENST00000597901 RIGQ13278 110 aa9.7□□□□□ -0.86
LIG1-215ENST00000597901 ESDP10768 282 aa9.69□□□□□ -0.86
LIG1-215ENST00000597901 CNBPP62633 177 aaKnown RBP9.69□□□□□ -0.86
LIG1-215ENST00000597901 PEA15Q15121 130 aa9.69□□□□□ -0.86
LIG1-215ENST00000597901 AMN1Q8IY45 258 aa9.69□□□□□ -0.86
LIG1-215ENST00000597901 DMBT1Q9UGM3 2413 aaPredicted RBP9.68□□□□□ -0.86
LIG1-215ENST00000597901 TSHBP01222 138 aa9.68□□□□□ -0.86
LIG1-215ENST00000597901 RPS10P46783 165 aaKnown RBP9.68□□□□□ -0.86
LIG1-215ENST00000597901 KRTAP10-4P60372 401 aaPredicted RBP9.68□□□□□ -0.86
LIG1-215ENST00000597901 CFAP161Q6P656 301 aa9.68□□□□□ -0.86
LIG1-215ENST00000597901 MRAP2Q96G30 205 aa9.68□□□□□ -0.86
LIG1-215ENST00000597901 AP5S1Q9NUS5 200 aa9.68□□□□□ -0.86
LIG1-215ENST00000597901 NAT8Q9UHE5 227 aa9.68□□□□□ -0.86
LIG1-215ENST00000597901 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.68□□□□□ -0.86
LIG1-215ENST00000597901 FLG2Q5D862 2391 aaPredicted RBP9.68□□□□□ -0.86
LIG1-215ENST00000597901 HERC1Q15751 4861 aa9.67□□□□□ -0.86
LIG1-215ENST00000597901 PANO1I0J062 215 aa9.67□□□□□ -0.86
LIG1-215ENST00000597901 ADIRFQ15847 76 aa9.67□□□□□ -0.86
LIG1-215ENST00000597901 CHCHD10Q8WYQ3 142 aaPredicted RBP9.67□□□□□ -0.86
LIG1-215ENST00000597901 BTF3L4Q96K17 158 aa9.67□□□□□ -0.86
LIG1-215ENST00000597901 TMEM242Q9NWH2 141 aa9.67□□□□□ -0.86
LIG1-215ENST00000597901 NAT8BQ9UHF3 227 aa9.67□□□□□ -0.86
LIG1-215ENST00000597901 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.66□□□□□ -0.86
LIG1-215ENST00000597901 TRBV27A0A0K0K1C4 114 aa9.66□□□□□ -0.86
LIG1-215ENST00000597901 SMKR1H3BMG3 65 aa9.66□□□□□ -0.86
LIG1-215ENST00000597901 VCYO14598 125 aa9.66□□□□□ -0.86
LIG1-215ENST00000597901 ZNF25P17030 456 aaPredicted RBP9.66□□□□□ -0.86
LIG1-215ENST00000597901 TMEM101Q96IK0 257 aa9.66□□□□□ -0.86
LIG1-215ENST00000597901 SMDT1Q9H4I9 107 aa9.66□□□□□ -0.86
LIG1-215ENST00000597901 MYCBP2O75592 4640 aa9.65□□□□□ -0.86
LIG1-215ENST00000597901 SMIM27A0A1W2PRY6 76 aa9.65□□□□□ -0.86
LIG1-215ENST00000597901 C15orf56Q8N910 161 aa9.65□□□□□ -0.86
LIG1-215ENST00000597901 OR5A1Q8NGJ0 315 aa9.65□□□□□ -0.86
LIG1-215ENST00000597901 IGHV3-64A0A075B6Q5 118 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms