RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 RPL39LQ96EH5 51 aaKnown RBP8.47□□□□□ -1.05
LIG1-212ENST00000596549 TMEM243Q9BU79 118 aa8.47□□□□□ -1.05
LIG1-212ENST00000596549 SRRM2Q9UQ35 2752 aaKnown RBP8.47□□□□□ -1.05
LIG1-212ENST00000596549 IGLV10-54A0A075B6I4 117 aa8.46□□□□□ -1.06
LIG1-212ENST00000596549 GATCO43716 136 aaKnown RBP8.46□□□□□ -1.06
LIG1-212ENST00000596549 PRSS1P07477 247 aa8.46□□□□□ -1.06
LIG1-212ENST00000596549 C14orf177Q52M58 125 aa8.46□□□□□ -1.06
LIG1-212ENST00000596549 LINC01551Q86U37 167 aa8.46□□□□□ -1.06
LIG1-212ENST00000596549 FAM210AQ96ND0 272 aa8.46□□□□□ -1.06
LIG1-212ENST00000596549 A0A1B0GUV1 79 aa8.45□□□□□ -1.06
LIG1-212ENST00000596549 AMTP48728 403 aa8.45□□□□□ -1.06
LIG1-212ENST00000596549 COTL1Q14019 142 aa8.45□□□□□ -1.06
LIG1-212ENST00000596549 CT83Q5H943 113 aa8.45□□□□□ -1.06
LIG1-212ENST00000596549 CIRBP-AS1Q8TBR5 109 aa8.45□□□□□ -1.06
LIG1-212ENST00000596549 SMIM7Q9BQ49 75 aa8.45□□□□□ -1.06
LIG1-212ENST00000596549 CHAC1Q9BUX1 264 aa8.45□□□□□ -1.06
LIG1-212ENST00000596549 NDUFS6O75380 124 aaKnown RBP8.44□□□□□ -1.06
LIG1-212ENST00000596549 SRP19P09132 144 aaKnown RBP8.44□□□□□ -1.06
LIG1-212ENST00000596549 KRTAP10-4P60372 401 aaPredicted RBP8.44□□□□□ -1.06
LIG1-212ENST00000596549 EIF5A2Q9GZV4 153 aaKnown RBP8.44□□□□□ -1.06
LIG1-212ENST00000596549 HERC1Q15751 4861 aa8.43□□□□□ -1.06
LIG1-212ENST00000596549 A8MWL6 223 aa8.43□□□□□ -1.06
LIG1-212ENST00000596549 GAS8-AS1O95177 125 aa8.43□□□□□ -1.06
LIG1-212ENST00000596549 FLG2Q5D862 2391 aaPredicted RBP8.43□□□□□ -1.06
LIG1-212ENST00000596549 ZNF727A8MUV8 499 aa8.42□□□□□ -1.06
LIG1-212ENST00000596549 UBE2L6O14933 153 aa8.42□□□□□ -1.06
LIG1-212ENST00000596549 TRAV8-4A0A0B4J246 113 aa8.41□□□□□ -1.06
LIG1-212ENST00000596549 SDHAF1A6NFY7 115 aa8.41□□□□□ -1.06
LIG1-212ENST00000596549 HIGD1CA8MV81 97 aa8.41□□□□□ -1.06
LIG1-212ENST00000596549 PANO1I0J062 215 aa8.41□□□□□ -1.06
LIG1-212ENST00000596549 PLA2G1BP04054 148 aaKnown RBP8.41□□□□□ -1.06
LIG1-212ENST00000596549 C9orf163Q8N9P6 203 aa8.41□□□□□ -1.06
LIG1-212ENST00000596549 TSKUQ8WUA8 353 aa8.41□□□□□ -1.06
LIG1-212ENST00000596549 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.4□□□□□ -1.06
LIG1-212ENST00000596549 TRBV6-5A0A0K0K1A5 114 aa8.4□□□□□ -1.06
LIG1-212ENST00000596549 IGKV2-29A2NJV5 120 aaPredicted RBP8.4□□□□□ -1.06
LIG1-212ENST00000596549 NCR2O95944 276 aa8.4□□□□□ -1.06
LIG1-212ENST00000596549 DGAT2L7PQ6IED9 249 aa8.4□□□□□ -1.06
LIG1-212ENST00000596549 SMIM15Q7Z3B0 74 aa8.4□□□□□ -1.06
LIG1-212ENST00000596549 ISOC2Q96AB3 205 aa8.4□□□□□ -1.06
LIG1-212ENST00000596549 RNF185Q96GF1 192 aa8.4□□□□□ -1.06
LIG1-212ENST00000596549 OSTCQ9NRP0 149 aa8.4□□□□□ -1.06
LIG1-212ENST00000596549 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.4□□□□□ -1.06
LIG1-212ENST00000596549 V9GYV3 84 aa8.4□□□□□ -1.06
LIG1-212ENST00000596549 C9JQL5 133 aa8.39□□□□□ -1.07
LIG1-212ENST00000596549 APCSP02743 223 aa8.39□□□□□ -1.07
LIG1-212ENST00000596549 RPS10P46783 165 aaKnown RBP8.39□□□□□ -1.07
LIG1-212ENST00000596549 C15orf56Q8N910 161 aa8.39□□□□□ -1.07
LIG1-212ENST00000596549 DMBT1Q9UGM3 2413 aaPredicted RBP8.39□□□□□ -1.07
LIG1-212ENST00000596549 A0A1B0GUT8 65 aa8.38□□□□□ -1.07
LIG1-212ENST00000596549 FAM231BA6NCW3 169 aa8.38□□□□□ -1.07
LIG1-212ENST00000596549 SLPIP03973 132 aa8.38□□□□□ -1.07
LIG1-212ENST00000596549 CNBPP62633 177 aaKnown RBP8.38□□□□□ -1.07
LIG1-212ENST00000596549 RPL23P62829 140 aaKnown RBP8.38□□□□□ -1.07
LIG1-212ENST00000596549 SRSF3P84103 164 aaKnown RBP8.38□□□□□ -1.07
LIG1-212ENST00000596549 TEX261Q6UWH6 196 aa8.38□□□□□ -1.07
LIG1-212ENST00000596549 AMN1Q8IY45 258 aa8.38□□□□□ -1.07
LIG1-212ENST00000596549 BORCS7Q96B45 105 aa8.38□□□□□ -1.07
LIG1-212ENST00000596549 TMEM191AQ9H0A3 160 aa8.38□□□□□ -1.07
LIG1-212ENST00000596549 IGKV3OR2-268A0A0C4DH90 116 aa8.37□□□□□ -1.07
LIG1-212ENST00000596549 hDV102S1A0JD36 115 aa8.37□□□□□ -1.07
LIG1-212ENST00000596549 TSHBP01222 138 aa8.37□□□□□ -1.07
LIG1-212ENST00000596549 FGF6P10767 208 aa8.37□□□□□ -1.07
LIG1-212ENST00000596549 CLRN3Q8NCR9 226 aa8.37□□□□□ -1.07
LIG1-212ENST00000596549 TMEM242Q9NWH2 141 aa8.37□□□□□ -1.07
LIG1-212ENST00000596549 GAGE12HA6NDE8 117 aa8.36□□□□□ -1.07
LIG1-212ENST00000596549 H7C423 109 aa8.36□□□□□ -1.07
LIG1-212ENST00000596549 I3L3M4 83 aa8.36□□□□□ -1.07
LIG1-212ENST00000596549 ESDP10768 282 aa8.36□□□□□ -1.07
LIG1-212ENST00000596549 RAB4AP20338 218 aa8.36□□□□□ -1.07
LIG1-212ENST00000596549 AMMECR1LQ6DCA0 310 aa8.36□□□□□ -1.07
LIG1-212ENST00000596549 RNASEKQ6P5S7 137 aaKnown RBP8.36□□□□□ -1.07
LIG1-212ENST00000596549 SDIM1Q6ZPB5 146 aa8.36□□□□□ -1.07
LIG1-212ENST00000596549 NUP35Q8NFH5 326 aa8.36□□□□□ -1.07
LIG1-212ENST00000596549 SMKR1H3BMG3 65 aa8.35□□□□□ -1.07
LIG1-212ENST00000596549 POLR2KP53803 58 aaKnown RBP8.35□□□□□ -1.07
LIG1-212ENST00000596549 CIRBPQ14011 172 aaKnown RBP8.35□□□□□ -1.07
LIG1-212ENST00000596549 ZNF25P17030 456 aaPredicted RBP8.34□□□□□ -1.07
LIG1-212ENST00000596549 PMCHP20382 165 aa8.34□□□□□ -1.07
LIG1-212ENST00000596549 ADIRFQ15847 76 aa8.34□□□□□ -1.07
LIG1-212ENST00000596549 TMEM241Q24JQ0 296 aa8.34□□□□□ -1.07
LIG1-212ENST00000596549 NRACQ8N912 160 aa8.34□□□□□ -1.07
LIG1-212ENST00000596549 CHCHD10Q8WYQ3 142 aaPredicted RBP8.34□□□□□ -1.07
LIG1-212ENST00000596549 MRAP2Q96G30 205 aa8.34□□□□□ -1.07
LIG1-212ENST00000596549 ST20Q9HBF5 79 aa8.34□□□□□ -1.07
LIG1-212ENST00000596549 LRP1Q07954 4544 aaKnown RBP8.34□□□□□ -1.07
LIG1-212ENST00000596549 TRBV27A0A0K0K1C4 114 aa8.33□□□□□ -1.08
LIG1-212ENST00000596549 KRTAP29-1A8MX34 341 aaPredicted RBP8.33□□□□□ -1.08
LIG1-212ENST00000596549 CHTF8P0CG12 524 aa8.33□□□□□ -1.08
LIG1-212ENST00000596549 HNRNPA3P51991 378 aaKnown RBP8.33□□□□□ -1.08
LIG1-212ENST00000596549 FOXI1Q12951 378 aa8.33□□□□□ -1.08
LIG1-212ENST00000596549 HIGD2BQ4VC39 106 aa8.33□□□□□ -1.08
LIG1-212ENST00000596549 FAM74A3Q4VXF1 159 aa8.33□□□□□ -1.08
LIG1-212ENST00000596549 OR5A1Q8NGJ0 315 aa8.33□□□□□ -1.08
LIG1-212ENST00000596549 NAT8Q9UHE5 227 aa8.33□□□□□ -1.08
LIG1-212ENST00000596549 NAT8BQ9UHF3 227 aa8.33□□□□□ -1.08
LIG1-212ENST00000596549 SMIM27A0A1W2PRY6 76 aa8.32□□□□□ -1.08
LIG1-212ENST00000596549 RIGQ13278 110 aa8.32□□□□□ -1.08
LIG1-212ENST00000596549 IGHV3-64A0A075B6Q5 118 aa8.31□□□□□ -1.08
LIG1-212ENST00000596549 GVQW2A0A096LPI5 108 aaPredicted RBP8.31□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms