RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 PKD1P98161 4303 aa11.55□□□□□ -0.56
SHKBP1-212ENST00000596163 IGKV2D-24A0A075B6R9 120 aa11.54□□□□□ -0.56
SHKBP1-212ENST00000596163 I3L3M4 83 aa11.54□□□□□ -0.56
SHKBP1-212ENST00000596163 RBX1P62877 108 aa11.54□□□□□ -0.56
SHKBP1-212ENST00000596163 ATP5L2Q7Z4Y8 100 aa11.54□□□□□ -0.56
SHKBP1-212ENST00000596163 A0A1B0GUV1 79 aa11.53□□□□□ -0.56
SHKBP1-212ENST00000596163 LINC00862A6NCI5 91 aa11.53□□□□□ -0.56
SHKBP1-212ENST00000596163 CDPF1Q6NVV7 123 aa11.53□□□□□ -0.56
SHKBP1-212ENST00000596163 MRPL54Q6P161 138 aaKnown RBP11.53□□□□□ -0.56
SHKBP1-212ENST00000596163 COMMD7Q86VX2 200 aa11.53□□□□□ -0.56
SHKBP1-212ENST00000596163 Q8N976 141 aa11.53□□□□□ -0.56
SHKBP1-212ENST00000596163 APCSP02743 223 aa11.52□□□□□ -0.57
SHKBP1-212ENST00000596163 KRTAP10-2P60368 255 aa11.52□□□□□ -0.57
SHKBP1-212ENST00000596163 MIAQ16674 131 aa11.52□□□□□ -0.57
SHKBP1-212ENST00000596163 SEC11CQ9BY50 192 aa11.52□□□□□ -0.57
SHKBP1-212ENST00000596163 DNAH11Q96DT5 4516 aa11.51□□□□□ -0.57
SHKBP1-212ENST00000596163 A0A1B0GXF2 115 aa11.51□□□□□ -0.57
SHKBP1-212ENST00000596163 LRCOL1A6NCL2 159 aa11.51□□□□□ -0.57
SHKBP1-212ENST00000596163 H7C423 109 aa11.51□□□□□ -0.57
SHKBP1-212ENST00000596163 CKS2P33552 79 aa11.51□□□□□ -0.57
SHKBP1-212ENST00000596163 DEFB104AQ8WTQ1 72 aa11.51□□□□□ -0.57
SHKBP1-212ENST00000596163 TMEM70Q9BUB7 260 aa11.51□□□□□ -0.57
SHKBP1-212ENST00000596163 C1orf43Q9BWL3 253 aa11.51□□□□□ -0.57
SHKBP1-212ENST00000596163 VCYO14598 125 aa11.5□□□□□ -0.57
SHKBP1-212ENST00000596163 POLR2KP53803 58 aaKnown RBP11.5□□□□□ -0.57
SHKBP1-212ENST00000596163 MRPL51Q4U2R6 128 aaKnown RBP11.5□□□□□ -0.57
SHKBP1-212ENST00000596163 ENHOQ6UWT2 76 aa11.5□□□□□ -0.57
SHKBP1-212ENST00000596163 CTDSP1Q9GZU7 261 aa11.5□□□□□ -0.57
SHKBP1-212ENST00000596163 TRBV27A0A0K0K1C4 114 aa11.49□□□□□ -0.57
SHKBP1-212ENST00000596163 SMKR1H3BMG3 65 aa11.49□□□□□ -0.57
SHKBP1-212ENST00000596163 GAS8-AS1O95177 125 aa11.49□□□□□ -0.57
SHKBP1-212ENST00000596163 RPS10P46783 165 aaKnown RBP11.49□□□□□ -0.57
SHKBP1-212ENST00000596163 AMMECR1LQ6DCA0 310 aa11.49□□□□□ -0.57
SHKBP1-212ENST00000596163 LINC00269Q8N2A0 174 aa11.49□□□□□ -0.57
SHKBP1-212ENST00000596163 NTN5Q8WTR8 489 aaPredicted RBP11.49□□□□□ -0.57
SHKBP1-212ENST00000596163 IMMP2LQ96T52 175 aa11.49□□□□□ -0.57
SHKBP1-212ENST00000596163 PRR34Q9NV39 138 aa11.49□□□□□ -0.57
SHKBP1-212ENST00000596163 PPBPP02775 128 aa11.48□□□□□ -0.57
SHKBP1-212ENST00000596163 ADCYAP1P18509 176 aa11.48□□□□□ -0.57
SHKBP1-212ENST00000596163 SUMO2P61956 95 aaKnown RBP11.48□□□□□ -0.57
SHKBP1-212ENST00000596163 Q8N814 137 aa11.48□□□□□ -0.57
SHKBP1-212ENST00000596163 BTF3L4Q96K17 158 aa11.48□□□□□ -0.57
SHKBP1-212ENST00000596163 C20orf78Q9BR46 151 aa11.48□□□□□ -0.57
SHKBP1-212ENST00000596163 DYNC1H1Q14204 4646 aaKnown RBP11.48□□□□□ -0.57
SHKBP1-212ENST00000596163 FCER1GP30273 86 aa11.47□□□□□ -0.57
SHKBP1-212ENST00000596163 REG3AQ06141 175 aa11.47□□□□□ -0.57
SHKBP1-212ENST00000596163 NRACQ8N912 160 aa11.47□□□□□ -0.57
SHKBP1-212ENST00000596163 KIR2DL4Q99706 377 aa11.47□□□□□ -0.57
SHKBP1-212ENST00000596163 PKHD1P08F94 4074 aa11.46□□□□□ -0.57
SHKBP1-212ENST00000596163 TRBV24-1A0A075B6N3 115 aa11.46□□□□□ -0.57
SHKBP1-212ENST00000596163 TRAV8-4A0A0B4J246 113 aa11.46□□□□□ -0.57
SHKBP1-212ENST00000596163 TCAPO15273 167 aa11.46□□□□□ -0.57
SHKBP1-212ENST00000596163 TSHBP01222 138 aa11.46□□□□□ -0.57
SHKBP1-212ENST00000596163 RNASEKQ6P5S7 137 aaKnown RBP11.46□□□□□ -0.57
SHKBP1-212ENST00000596163 C20orf203Q8NBC4 194 aa11.46□□□□□ -0.57
SHKBP1-212ENST00000596163 BAALCQ8WXS3 180 aa11.46□□□□□ -0.57
SHKBP1-212ENST00000596163 KRTAP17-1Q9BYP8 105 aa11.46□□□□□ -0.57
SHKBP1-212ENST00000596163 TMEM242Q9NWH2 141 aa11.46□□□□□ -0.57
SHKBP1-212ENST00000596163 IGLV4-60A0A075B6I1 120 aa11.45□□□□□ -0.58
SHKBP1-212ENST00000596163 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.45□□□□□ -0.58
SHKBP1-212ENST00000596163 IGLV5-52A0A0A0MRZ9 124 aa11.45□□□□□ -0.58
SHKBP1-212ENST00000596163 IGKV2-29A2NJV5 120 aaPredicted RBP11.45□□□□□ -0.58
SHKBP1-212ENST00000596163 PHOX2AO14813 284 aa11.45□□□□□ -0.58
SHKBP1-212ENST00000596163 ZNF25P17030 456 aaPredicted RBP11.45□□□□□ -0.58
SHKBP1-212ENST00000596163 SMAGPQ0VAQ4 97 aa11.45□□□□□ -0.58
SHKBP1-212ENST00000596163 TMEM101Q96IK0 257 aa11.45□□□□□ -0.58
SHKBP1-212ENST00000596163 D6R8Y8 96 aa11.44□□□□□ -0.58
SHKBP1-212ENST00000596163 TNFRSF6BO95407 300 aa11.44□□□□□ -0.58
SHKBP1-212ENST00000596163 FGF6P10767 208 aa11.44□□□□□ -0.58
SHKBP1-212ENST00000596163 ESDP10768 282 aa11.44□□□□□ -0.58
SHKBP1-212ENST00000596163 RPL32P62910 135 aaKnown RBP11.44□□□□□ -0.58
SHKBP1-212ENST00000596163 C14orf177Q52M58 125 aa11.44□□□□□ -0.58
SHKBP1-212ENST00000596163 CLPSL2Q6UWE3 100 aa11.44□□□□□ -0.58
SHKBP1-212ENST00000596163 ORMDL3Q8N138 153 aa11.44□□□□□ -0.58
SHKBP1-212ENST00000596163 MAPKAPK5-AS1Q8N8E1 139 aa11.44□□□□□ -0.58
SHKBP1-212ENST00000596163 S100PP25815 95 aa11.43□□□□□ -0.58
SHKBP1-212ENST00000596163 C10orf91Q5T1B1 145 aa11.43□□□□□ -0.58
SHKBP1-212ENST00000596163 TMEM136Q6ZRR5 245 aa11.43□□□□□ -0.58
SHKBP1-212ENST00000596163 TRAV9-1A0A075B6T8 112 aa11.42□□□□□ -0.58
SHKBP1-212ENST00000596163 C7orf77A4D0Y5 90 aa11.42□□□□□ -0.58
SHKBP1-212ENST00000596163 LECT2O14960 151 aa11.42□□□□□ -0.58
SHKBP1-212ENST00000596163 CDK2AP2O75956 126 aa11.42□□□□□ -0.58
SHKBP1-212ENST00000596163 GCSHP23434 173 aa11.42□□□□□ -0.58
SHKBP1-212ENST00000596163 TMEM18Q96B42 140 aa11.42□□□□□ -0.58
SHKBP1-212ENST00000596163 OR5A1Q8NGJ0 315 aa11.41□□□□□ -0.58
SHKBP1-212ENST00000596163 PRELID3AQ96N28 172 aa11.41□□□□□ -0.58
SHKBP1-212ENST00000596163 LAMTOR2Q9Y2Q5 125 aa11.41□□□□□ -0.58
SHKBP1-212ENST00000596163 CARHSP1Q9Y2V2 147 aaKnown RBP11.41□□□□□ -0.58
SHKBP1-212ENST00000596163 HLA-DQA1P01909 254 aa11.4□□□□□ -0.58
SHKBP1-212ENST00000596163 FUSP35637 526 aaKnown RBP eCLIP11.4□□□□□ -0.58
SHKBP1-212ENST00000596163 WFDC2Q14508 124 aa11.4□□□□□ -0.58
SHKBP1-212ENST00000596163 DGAT2L7PQ6IED9 249 aa11.4□□□□□ -0.58
SHKBP1-212ENST00000596163 IGLV10-54A0A075B6I4 117 aa11.39□□□□□ -0.59
SHKBP1-212ENST00000596163 NPYP01303 97 aa11.39□□□□□ -0.59
SHKBP1-212ENST00000596163 RHEBQ15382 184 aa11.39□□□□□ -0.59
SHKBP1-212ENST00000596163 MRPL52Q86TS9 123 aaKnown RBP11.39□□□□□ -0.59
SHKBP1-212ENST00000596163 SMIM2Q9BVW6 85 aa11.39□□□□□ -0.59
SHKBP1-212ENST00000596163 NDUFA5Q16718 116 aa11.38□□□□□ -0.59
SHKBP1-212ENST00000596163 CLRN3Q8NCR9 226 aa11.38□□□□□ -0.59
SHKBP1-212ENST00000596163 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 76.2 ms