RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 SEC11CQ9BY50 192 aa10.05□□□□□ -0.8
UPF1-202ENST00000594243 KIAA1109Q2LD37 5005 aa10.05□□□□□ -0.8
UPF1-202ENST00000594243 PKHD1P08F94 4074 aa10.04□□□□□ -0.8
UPF1-202ENST00000594243 LINC00862A6NCI5 91 aa10.04□□□□□ -0.8
UPF1-202ENST00000594243 UBE2L6O14933 153 aa10.04□□□□□ -0.8
UPF1-202ENST00000594243 CRPP02741 224 aa10.04□□□□□ -0.8
UPF1-202ENST00000594243 ADCYAP1P18509 176 aa10.04□□□□□ -0.8
UPF1-202ENST00000594243 ATP5L2Q7Z4Y8 100 aa10.04□□□□□ -0.8
UPF1-202ENST00000594243 Q8N976 141 aa10.04□□□□□ -0.8
UPF1-202ENST00000594243 PGPEP1Q9NXJ5 209 aa10.04□□□□□ -0.8
UPF1-202ENST00000594243 A0A1B0GUV1 79 aa10.03□□□□□ -0.8
UPF1-202ENST00000594243 A0A1B0GXF2 115 aa10.03□□□□□ -0.8
UPF1-202ENST00000594243 C16orf90A8MZG2 172 aa10.03□□□□□ -0.8
UPF1-202ENST00000594243 GAS8-AS1O95177 125 aa10.03□□□□□ -0.8
UPF1-202ENST00000594243 RBX1P62877 108 aa10.03□□□□□ -0.8
UPF1-202ENST00000594243 MRPL51Q4U2R6 128 aaKnown RBP10.03□□□□□ -0.8
UPF1-202ENST00000594243 DEFB104AQ8WTQ1 72 aa10.03□□□□□ -0.8
UPF1-202ENST00000594243 KRTAP17-1Q9BYP8 105 aa10.03□□□□□ -0.8
UPF1-202ENST00000594243 APCSP02743 223 aa10.02□□□□□ -0.81
UPF1-202ENST00000594243 RPS10P46783 165 aaKnown RBP10.02□□□□□ -0.81
UPF1-202ENST00000594243 POLR2KP53803 58 aaKnown RBP10.02□□□□□ -0.81
UPF1-202ENST00000594243 ENHOQ6UWT2 76 aa10.02□□□□□ -0.81
UPF1-202ENST00000594243 TMEM70Q9BUB7 260 aa10.02□□□□□ -0.81
UPF1-202ENST00000594243 CTDSP1Q9GZU7 261 aa10.02□□□□□ -0.81
UPF1-202ENST00000594243 IGKV2D-24A0A075B6R9 120 aa10.01□□□□□ -0.81
UPF1-202ENST00000594243 LRCOL1A6NCL2 159 aa10.01□□□□□ -0.81
UPF1-202ENST00000594243 SMKR1H3BMG3 65 aa10.01□□□□□ -0.81
UPF1-202ENST00000594243 H7C423 109 aa10.01□□□□□ -0.81
UPF1-202ENST00000594243 VCYO14598 125 aa10.01□□□□□ -0.81
UPF1-202ENST00000594243 CKS2P33552 79 aa10.01□□□□□ -0.81
UPF1-202ENST00000594243 IMMP2LQ96T52 175 aa10.01□□□□□ -0.81
UPF1-202ENST00000594243 DYNC1H1Q14204 4646 aaKnown RBP10□□□□□ -0.81
UPF1-202ENST00000594243 TRBV27A0A0K0K1C4 114 aa10□□□□□ -0.81
UPF1-202ENST00000594243 KRTAP10-2P60368 255 aa10□□□□□ -0.81
UPF1-202ENST00000594243 MIAQ16674 131 aa10□□□□□ -0.81
UPF1-202ENST00000594243 CDPF1Q6NVV7 123 aa10□□□□□ -0.81
UPF1-202ENST00000594243 NRACQ8N912 160 aa10□□□□□ -0.81
UPF1-202ENST00000594243 BTF3L4Q96K17 158 aa10□□□□□ -0.81
UPF1-202ENST00000594243 C1orf43Q9BWL3 253 aa10□□□□□ -0.81
UPF1-202ENST00000594243 PRR34Q9NV39 138 aa10□□□□□ -0.81
UPF1-202ENST00000594243 PPBPP02775 128 aa9.99□□□□□ -0.81
UPF1-202ENST00000594243 SUMO2P61956 95 aaKnown RBP9.99□□□□□ -0.81
UPF1-202ENST00000594243 LINC00269Q8N2A0 174 aa9.99□□□□□ -0.81
UPF1-202ENST00000594243 C20orf78Q9BR46 151 aa9.99□□□□□ -0.81
UPF1-202ENST00000594243 DNAH11Q96DT5 4516 aa9.98□□□□□ -0.81
UPF1-202ENST00000594243 TRBV24-1A0A075B6N3 115 aa9.98□□□□□ -0.81
UPF1-202ENST00000594243 REG3AQ06141 175 aa9.98□□□□□ -0.81
UPF1-202ENST00000594243 C10orf91Q5T1B1 145 aa9.98□□□□□ -0.81
UPF1-202ENST00000594243 AMMECR1LQ6DCA0 310 aa9.98□□□□□ -0.81
UPF1-202ENST00000594243 C20orf203Q8NBC4 194 aa9.98□□□□□ -0.81
UPF1-202ENST00000594243 KIR2DL4Q99706 377 aa9.98□□□□□ -0.81
UPF1-202ENST00000594243 PKD1P98161 4303 aa9.98□□□□□ -0.81
UPF1-202ENST00000594243 IGLV4-60A0A075B6I1 120 aa9.97□□□□□ -0.81
UPF1-202ENST00000594243 TSHBP01222 138 aa9.97□□□□□ -0.81
UPF1-202ENST00000594243 FCER1GP30273 86 aa9.97□□□□□ -0.81
UPF1-202ENST00000594243 Q8N814 137 aa9.97□□□□□ -0.81
UPF1-202ENST00000594243 TMEM242Q9NWH2 141 aa9.97□□□□□ -0.81
UPF1-202ENST00000594243 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.96□□□□□ -0.82
UPF1-202ENST00000594243 TRAV8-4A0A0B4J246 113 aa9.96□□□□□ -0.82
UPF1-202ENST00000594243 IGKV2-29A2NJV5 120 aaPredicted RBP9.96□□□□□ -0.82
UPF1-202ENST00000594243 D6R8Y8 96 aa9.96□□□□□ -0.82
UPF1-202ENST00000594243 PHOX2AO14813 284 aa9.96□□□□□ -0.82
UPF1-202ENST00000594243 TNFRSF6BO95407 300 aa9.96□□□□□ -0.82
UPF1-202ENST00000594243 ESDP10768 282 aa9.96□□□□□ -0.82
UPF1-202ENST00000594243 ZNF25P17030 456 aaPredicted RBP9.96□□□□□ -0.82
UPF1-202ENST00000594243 ORMDL3Q8N138 153 aa9.96□□□□□ -0.82
UPF1-202ENST00000594243 MAPKAPK5-AS1Q8N8E1 139 aa9.96□□□□□ -0.82
UPF1-202ENST00000594243 NTN5Q8WTR8 489 aaPredicted RBP9.96□□□□□ -0.82
UPF1-202ENST00000594243 BAALCQ8WXS3 180 aa9.96□□□□□ -0.82
UPF1-202ENST00000594243 CARHSP1Q9Y2V2 147 aaKnown RBP9.96□□□□□ -0.82
UPF1-202ENST00000594243 PCLOQ9Y6V0 5065 aa9.95□□□□□ -0.82
UPF1-202ENST00000594243 TRAV9-1A0A075B6T8 112 aa9.95□□□□□ -0.82
UPF1-202ENST00000594243 TCAPO15273 167 aa9.95□□□□□ -0.82
UPF1-202ENST00000594243 FGF6P10767 208 aa9.95□□□□□ -0.82
UPF1-202ENST00000594243 S100PP25815 95 aa9.95□□□□□ -0.82
UPF1-202ENST00000594243 RPL32P62910 135 aaKnown RBP9.95□□□□□ -0.82
UPF1-202ENST00000594243 RNASEKQ6P5S7 137 aaKnown RBP9.95□□□□□ -0.82
UPF1-202ENST00000594243 CLPSL2Q6UWE3 100 aa9.95□□□□□ -0.82
UPF1-202ENST00000594243 TMEM136Q6ZRR5 245 aa9.95□□□□□ -0.82
UPF1-202ENST00000594243 TMEM101Q96IK0 257 aa9.95□□□□□ -0.82
UPF1-202ENST00000594243 RYR1P21817 5038 aa9.93□□□□□ -0.82
UPF1-202ENST00000594243 IGLV5-52A0A0A0MRZ9 124 aa9.93□□□□□ -0.82
UPF1-202ENST00000594243 C7orf77A4D0Y5 90 aa9.93□□□□□ -0.82
UPF1-202ENST00000594243 SMAGPQ0VAQ4 97 aa9.93□□□□□ -0.82
UPF1-202ENST00000594243 RHEBQ15382 184 aa9.93□□□□□ -0.82
UPF1-202ENST00000594243 CLRN3Q8NCR9 226 aa9.93□□□□□ -0.82
UPF1-202ENST00000594243 PRELID3AQ96N28 172 aa9.93□□□□□ -0.82
UPF1-202ENST00000594243 LECT2O14960 151 aa9.92□□□□□ -0.82
UPF1-202ENST00000594243 NPYP01303 97 aa9.92□□□□□ -0.82
UPF1-202ENST00000594243 FUSP35637 526 aaKnown RBP eCLIP9.92□□□□□ -0.82
UPF1-202ENST00000594243 NDUFA5Q16718 116 aa9.92□□□□□ -0.82
UPF1-202ENST00000594243 TMEM18Q96B42 140 aa9.92□□□□□ -0.82
UPF1-202ENST00000594243 SMIM2Q9BVW6 85 aa9.92□□□□□ -0.82
UPF1-202ENST00000594243 RPS10P5Q9NQ39 176 aa9.92□□□□□ -0.82
UPF1-202ENST00000594243 LAMTOR2Q9Y2Q5 125 aa9.92□□□□□ -0.82
UPF1-202ENST00000594243 IGLV10-54A0A075B6I4 117 aa9.91□□□□□ -0.82
UPF1-202ENST00000594243 HLA-DQA1P01909 254 aa9.91□□□□□ -0.82
UPF1-202ENST00000594243 GCSHP23434 173 aa9.91□□□□□ -0.82
UPF1-202ENST00000594243 WFDC2Q14508 124 aa9.91□□□□□ -0.82
UPF1-202ENST00000594243 C14orf177Q52M58 125 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 88.4 ms