RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 RNF185Q96GF1 192 aa15.24■□□□□ 0.03
LSM4-202ENST00000593564 TEX46H3BTG2 121 aa15.23■□□□□ 0.03
LSM4-202ENST00000593564 IFNA1P01562 189 aa15.23■□□□□ 0.03
LSM4-202ENST00000593564 Q6ZRU5 148 aa15.23■□□□□ 0.03
LSM4-202ENST00000593564 BIN3Q9NQY0 253 aa15.23■□□□□ 0.03
LSM4-202ENST00000593564 UBE2L6O14933 153 aa15.22■□□□□ 0.03
LSM4-202ENST00000593564 PDE6DO43924 150 aa15.22■□□□□ 0.03
LSM4-202ENST00000593564 NTF3P20783 257 aa15.22■□□□□ 0.03
LSM4-202ENST00000593564 MEF2BQ02080 365 aaPredicted RBP15.22■□□□□ 0.03
LSM4-202ENST00000593564 COTL1Q14019 142 aa15.22■□□□□ 0.03
LSM4-202ENST00000593564 WDR73Q6P4I2 378 aa15.22■□□□□ 0.03
LSM4-202ENST00000593564 C9orf62Q8N4C0 152 aa15.22■□□□□ 0.03
LSM4-202ENST00000593564 TRBV20OR9-2A0A075B6H5 130 aa15.21■□□□□ 0.03
LSM4-202ENST00000593564 MT1HL1P0DM35 61 aa15.21■□□□□ 0.03
LSM4-202ENST00000593564 AMTP48728 403 aa15.21■□□□□ 0.03
LSM4-202ENST00000593564 CTRLP40313 264 aa15.2■□□□□ 0.02
LSM4-202ENST00000593564 EIF5AL1Q6IS14 154 aaKnown RBP15.2■□□□□ 0.02
LSM4-202ENST00000593564 SPACA4Q8TDM5 124 aa15.2■□□□□ 0.02
LSM4-202ENST00000593564 A0A087WYN8 130 aa15.19■□□□□ 0.02
LSM4-202ENST00000593564 CHTF8P0CG12 524 aa15.19■□□□□ 0.02
LSM4-202ENST00000593564 SULT1A2P50226 295 aa15.19■□□□□ 0.02
LSM4-202ENST00000593564 DPH3Q96FX2 82 aa15.19■□□□□ 0.02
LSM4-202ENST00000593564 MED9Q9NWA0 146 aa15.19■□□□□ 0.02
LSM4-202ENST00000593564 CNFNQ9BYD5 112 aa15.18■□□□□ 0.02
LSM4-202ENST00000593564 CFAP161Q6P656 301 aa15.17■□□□□ 0.02
LSM4-202ENST00000593564 C15orf56Q8N910 161 aa15.17■□□□□ 0.02
LSM4-202ENST00000593564 GAGE12HA6NDE8 117 aa15.16■□□□□ 0.02
LSM4-202ENST00000593564 BCL2P10415 239 aa15.16■□□□□ 0.02
LSM4-202ENST00000593564 TWIST1Q15672 202 aa15.16■□□□□ 0.02
LSM4-202ENST00000593564 NUDT10Q8NFP7 164 aa15.16■□□□□ 0.02
LSM4-202ENST00000593564 NUDT11Q96G61 164 aa15.16■□□□□ 0.02
LSM4-202ENST00000593564 PLAC8Q9NZF1 115 aa15.16■□□□□ 0.02
LSM4-202ENST00000593564 GATD1Q8NB37 220 aa15.15■□□□□ 0.02
LSM4-202ENST00000593564 TRAV26-2A0A0B4J265 109 aa15.13■□□□□ 0.01
LSM4-202ENST00000593564 RPP21Q9H633 154 aaKnown RBP15.13■□□□□ 0.01
LSM4-202ENST00000593564 IGKV3OR2-268A0A0C4DH90 116 aa15.12■□□□□ 0.01
LSM4-202ENST00000593564 RPS10P46783 165 aaKnown RBP15.12■□□□□ 0.01
LSM4-202ENST00000593564 TNXBP22105 4242 aa15.11■□□□□ 0.01
LSM4-202ENST00000593564 NCR2O95944 276 aa15.11■□□□□ 0.01
LSM4-202ENST00000593564 COX6A2Q02221 97 aa15.11■□□□□ 0.01
LSM4-202ENST00000593564 PHOX2AO14813 284 aa15.1■□□□□ 0.01
LSM4-202ENST00000593564 TAGLN2P37802 199 aaKnown RBP15.1■□□□□ 0.01
LSM4-202ENST00000593564 HIGD2BQ4VC39 106 aa15.1■□□□□ 0.01
LSM4-202ENST00000593564 AMMECR1LQ6DCA0 310 aa15.1■□□□□ 0.01
LSM4-202ENST00000593564 Q6ZNX1 250 aa15.1■□□□□ 0.01
LSM4-202ENST00000593564 C7orf33Q8WU49 177 aa15.1■□□□□ 0.01
LSM4-202ENST00000593564 CHCHD10Q8WYQ3 142 aaPredicted RBP15.1■□□□□ 0.01
LSM4-202ENST00000593564 RNASE7Q9H1E1 156 aaKnown RBP15.1■□□□□ 0.01
LSM4-202ENST00000593564 H7C423 109 aa15.09■□□□□ 0.01
LSM4-202ENST00000593564 K7EN84 100 aa15.09■□□□□ 0.01
LSM4-202ENST00000593564 NDUFS6O75380 124 aaKnown RBP15.09■□□□□ 0.01
LSM4-202ENST00000593564 RPL39LQ96EH5 51 aaKnown RBP15.09■□□□□ 0.01
LSM4-202ENST00000593564 GVQW2A0A096LPI5 108 aaPredicted RBP15.07■□□□□ 0
LSM4-202ENST00000593564 APCSP02743 223 aa15.07■□□□□ 0
LSM4-202ENST00000593564 RNASEKQ6P5S7 137 aaKnown RBP15.07■□□□□ 0
LSM4-202ENST00000593564 TEX261Q6UWH6 196 aa15.07■□□□□ 0
LSM4-202ENST00000593564 SMIM15Q7Z3B0 74 aa15.07■□□□□ 0
LSM4-202ENST00000593564 PRSS3P2Q8NHM4 247 aa15.07■□□□□ 0
LSM4-202ENST00000593564 OCC1Q8TAD7 63 aa15.07■□□□□ 0
LSM4-202ENST00000593564 GTSF1Q8WW33 167 aa15.07■□□□□ 0
LSM4-202ENST00000593564 IGKV2D-29A0A075B6S2 120 aaPredicted RBP15.06■□□□□ 0
LSM4-202ENST00000593564 IGKV2-29A2NJV5 120 aaPredicted RBP15.06■□□□□ 0
LSM4-202ENST00000593564 MAJINQ3KP22 176 aa15.06■□□□□ 0
LSM4-202ENST00000593564 FGF6P10767 208 aa15.05■□□□□ -0
LSM4-202ENST00000593564 FOXA3P55318 350 aaPredicted RBP15.05■□□□□ -0
LSM4-202ENST00000593564 SLC51BQ86UW2 128 aa15.05■□□□□ -0
LSM4-202ENST00000593564 IGKV2-24A0A0C4DH68 120 aa15.04■□□□□ -0
LSM4-202ENST00000593564 SDHAF1A6NFY7 115 aa15.04■□□□□ -0
LSM4-202ENST00000593564 FOXI1Q12951 378 aa15.04■□□□□ -0
LSM4-202ENST00000593564 ZNF25P17030 456 aaPredicted RBP15.03■□□□□ -0
LSM4-202ENST00000593564 LRP2P98164 4655 aa15.03■□□□□ -0
LSM4-202ENST00000593564 OR5A1Q8NGJ0 315 aa15.02■□□□□ -0
LSM4-202ENST00000593564 PRR3P79522 188 aaKnown RBP15.01□□□□□ -0.01
LSM4-202ENST00000593564 TCTE3Q8IZS6 198 aa15.01□□□□□ -0.01
LSM4-202ENST00000593564 STPG4Q8N801 248 aa15.01□□□□□ -0.01
LSM4-202ENST00000593564 TRBV6-5A0A0K0K1A5 114 aa15□□□□□ -0.01
LSM4-202ENST00000593564 I3L3M4 83 aa15□□□□□ -0.01
LSM4-202ENST00000593564 A0A096LNI7 61 aa14.99□□□□□ -0.01
LSM4-202ENST00000593564 FAM231BA6NCW3 169 aa14.99□□□□□ -0.01
LSM4-202ENST00000593564 GATCO43716 136 aaKnown RBP14.99□□□□□ -0.01
LSM4-202ENST00000593564 PMCHP20382 165 aa14.99□□□□□ -0.01
LSM4-202ENST00000593564 FAM231DQ6ZW35 169 aa14.99□□□□□ -0.01
LSM4-202ENST00000593564 BTF3L4Q96K17 158 aa14.99□□□□□ -0.01
LSM4-202ENST00000593564 A8MWL6 223 aa14.98□□□□□ -0.01
LSM4-202ENST00000593564 XCL1P47992 114 aa14.98□□□□□ -0.01
LSM4-202ENST00000593564 TMEM101Q96IK0 257 aa14.98□□□□□ -0.01
LSM4-202ENST00000593564 LINC01600Q96MT4 127 aa14.98□□□□□ -0.01
LSM4-202ENST00000593564 LINC00474Q9P2X8 69 aa14.98□□□□□ -0.01
LSM4-202ENST00000593564 PKIGQ9Y2B9 76 aa14.98□□□□□ -0.01
LSM4-202ENST00000593564 LINC00959A0A1B0GUT2 108 aa14.97□□□□□ -0.01
LSM4-202ENST00000593564 TMEM250H0YL14 139 aa14.97□□□□□ -0.01
LSM4-202ENST00000593564 ESDP10768 282 aa14.97□□□□□ -0.01
LSM4-202ENST00000593564 LYPD6BQ8NI32 183 aa14.97□□□□□ -0.01
LSM4-202ENST00000593564 FAM210AQ96ND0 272 aa14.97□□□□□ -0.01
LSM4-202ENST00000593564 IGHV1-58A0A0C4DH39 117 aa14.96□□□□□ -0.01
LSM4-202ENST00000593564 CCL25O15444 150 aa14.96□□□□□ -0.01
LSM4-202ENST00000593564 RNF213Q63HN8 5207 aa14.95□□□□□ -0.02
LSM4-202ENST00000593564 TSHBP01222 138 aa14.95□□□□□ -0.02
LSM4-202ENST00000593564 CT83Q5H943 113 aa14.95□□□□□ -0.02
LSM4-202ENST00000593564 MRAP2Q96G30 205 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms