RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 DYNAPQ8N1N2 210 aa1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 OR13C6PQ8NH95 151 aa1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 HSPB9Q9BQS6 159 aa1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 SLC25A39Q9BZJ4 359 aaPredicted RBP1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 DAZ3Q9NR90 486 aaKnown RBP1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 YTHDF2Q9Y5A9 579 aaKnown RBP1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 DNAH11Q96DT5 4516 aa1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 TLN2Q9Y4G6 2542 aa1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 PPBPP02775 128 aa1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 IGKV1-16P04430 117 aa1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 LSM3P62310 102 aaKnown RBP1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 BLCAPP62952 87 aa1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 RRN3P1Q2M238 152 aa1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 SPANXN5Q5MJ07 72 aa1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 LGALS9CQ6DKI2 356 aa1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 AMN1Q8IY45 258 aa1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 PRADC1Q9BSG0 188 aa1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 UPK3BQ9BT76 320 aa1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 TMEM70Q9BUB7 260 aa1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 NPCDR1Q9BY65 106 aa1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 OR5AC2Q9NZP5 309 aa1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 CARHSP1Q9Y2V2 147 aaKnown RBP1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 TRBV19A0A075B6N1 114 aa1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 TGIF2-C20orf24A0A0A6YYL0 155 aa1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 A0A0J9YX75 114 aa1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 A6NIN4 97 aa1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 M0R381 172 aa1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 PLA2G10O15496 165 aa1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 IGLV7-43P04211 117 aa1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 LINC00612Q8N6U2 182 aa1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 ICOSQ9Y6W8 199 aa1.3□□□□□ -2.2
SMCHD1-211ENST00000584897 KNL1Q8NG31 2342 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 IGLV4-60A0A075B6I1 120 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 MDFIC2A0A1B0GVS7 189 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 FABP5P3A8MUU1 101 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 F8W036 122 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 SSSCA1O60232 199 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 IGKV1-39P01597 117 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 IGKV1-17P01599 117 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 IGKV1D-39P04432 117 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 ATP5G1P05496 136 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 NBEAP1P0C6P0 100 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 IGLC2P0DOY2 106 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 ATP5G3P48201 142 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 REG1BP48304 166 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 S100A10P60903 97 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 UBE2G1P62253 170 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 ZNF90Q03938 601 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 Q0VG73 95 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 C4orf26Q17RF5 130 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 LYZL2Q7Z4W2 148 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 FAM19A5Q7Z5A7 132 aaPredicted RBP1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 PRNTQ86SH4 94 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 OR5C1Q8NGR4 320 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 ZNRF2Q8NHG8 242 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 ZNF414Q96IQ9 312 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 GTSF1LQ9H1H1 148 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 FREM1Q5H8C1 2179 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 VWFP04275 2813 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP1.29□□□□□ -2.26e-7■■■■■ 46.1
SMCHD1-211ENST00000584897 TRAV4A0A0B4J268 109 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 TRBV6-4A0A1B0GX49 114 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 ZNF705FA8MVS1 300 aaPredicted RBP1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 OR7C2O60412 319 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 MT-ND6P03923 174 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 ZNF705DP0CH99 300 aaPredicted RBP1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 ZNF705BP0CI00 300 aaPredicted RBP1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 ASIPP42127 132 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 AKR1C3P42330 323 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 SEC11AP67812 179 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 SYCNQ0VAF6 134 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 JOSD1Q15040 202 aaPredicted RBP1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 ZNF705AQ6ZN79 300 aaPredicted RBP1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 OR2D3Q8NGH3 330 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 PPP1R1CQ8WVI7 109 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 TIMM8BQ9Y5J9 83 aaPredicted RBP1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 A0A0B4J2C4 111 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 KRTAP4-16G5E9R7 235 aaPredicted RBP1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 M0R2P5 195 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 MGST1P10620 155 aaKnown RBP1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 ZNF25P17030 456 aaPredicted RBP1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 CNTFRP26992 372 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 RAB4BP61018 213 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 UBE2L3P68036 154 aaKnown RBP1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 NDPQ00604 133 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 RHOHQ15669 191 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 LINC00305Q7Z4B0 112 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 DCANP1Q8TF63 244 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 FAM19A4Q96LR4 140 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 C8orf17Q9NRJ1 99 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 RBM12B-AS1Q9P1G2 102 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 HIVEP2P31629 2446 aa1.29□□□□□ -2.2
SMCHD1-211ENST00000584897 DOCK11Q5JSL3 2073 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 HSPG2P98160 4391 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 FAT3Q8TDW7 4589 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 IGKV2-28A0A075B6P5 120 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 LINC00587B1AMM8 73 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 IGKV2D-28P01615 120 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 GCHFRP30047 84 aa1.28□□□□□ -2.2
SMCHD1-211ENST00000584897 CCL18P55774 89 aa1.28□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms