RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 OXTP01178 125 aa9.37□□□□□ -0.91
SMARCE1-216ENST00000580419 CIRBPQ14011 172 aaKnown RBP9.37□□□□□ -0.91
SMARCE1-216ENST00000580419 LINC01620Q4KN68 170 aa9.37□□□□□ -0.91
SMARCE1-216ENST00000580419 C20orf203Q8NBC4 194 aa9.37□□□□□ -0.91
SMARCE1-216ENST00000580419 RPP21Q9H633 154 aaKnown RBP9.37□□□□□ -0.91
SMARCE1-216ENST00000580419 J3QL48 77 aa9.36□□□□□ -0.91
SMARCE1-216ENST00000580419 MGPP08493 103 aa9.36□□□□□ -0.91
SMARCE1-216ENST00000580419 FOXA3P55318 350 aaPredicted RBP9.36□□□□□ -0.91
SMARCE1-216ENST00000580419 GAGE6Q13070 117 aa9.36□□□□□ -0.91
SMARCE1-216ENST00000580419 COTL1Q14019 142 aa9.36□□□□□ -0.91
SMARCE1-216ENST00000580419 FAM231DQ6ZW35 169 aa9.36□□□□□ -0.91
SMARCE1-216ENST00000580419 LRP1Q07954 4544 aaKnown RBP9.35□□□□□ -0.91
SMARCE1-216ENST00000580419 HLA-DQA1P01909 254 aa9.35□□□□□ -0.91
SMARCE1-216ENST00000580419 NKX2-5P52952 324 aaPredicted RBP9.35□□□□□ -0.91
SMARCE1-216ENST00000580419 SSTP61278 116 aa9.35□□□□□ -0.91
SMARCE1-216ENST00000580419 BLOC1S1P78537 153 aa9.35□□□□□ -0.91
SMARCE1-216ENST00000580419 CT83Q5H943 113 aa9.35□□□□□ -0.91
SMARCE1-216ENST00000580419 SDIM1Q6ZPB5 146 aa9.35□□□□□ -0.91
SMARCE1-216ENST00000580419 RNF185Q96GF1 192 aa9.35□□□□□ -0.91
SMARCE1-216ENST00000580419 Q6ZNX1 250 aa9.34□□□□□ -0.91
SMARCE1-216ENST00000580419 OCC1Q8TAD7 63 aa9.34□□□□□ -0.91
SMARCE1-216ENST00000580419 PKHD1L1Q86WI1 4243 aa9.33□□□□□ -0.92
SMARCE1-216ENST00000580419 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.33□□□□□ -0.92
SMARCE1-216ENST00000580419 A8MWL6 223 aa9.33□□□□□ -0.92
SMARCE1-216ENST00000580419 K7EN84 100 aa9.33□□□□□ -0.92
SMARCE1-216ENST00000580419 TWIST1Q15672 202 aa9.33□□□□□ -0.92
SMARCE1-216ENST00000580419 SMIM15Q7Z3B0 74 aa9.33□□□□□ -0.92
SMARCE1-216ENST00000580419 FAT3Q8TDW7 4589 aa9.33□□□□□ -0.92
SMARCE1-216ENST00000580419 IGLV4-60A0A075B6I1 120 aa9.32□□□□□ -0.92
SMARCE1-216ENST00000580419 TRBV6-5A0A0K0K1A5 114 aa9.32□□□□□ -0.92
SMARCE1-216ENST00000580419 FAM231BA6NCW3 169 aa9.32□□□□□ -0.92
SMARCE1-216ENST00000580419 UBE2L6O14933 153 aa9.32□□□□□ -0.92
SMARCE1-216ENST00000580419 AMTP48728 403 aa9.32□□□□□ -0.92
SMARCE1-216ENST00000580419 GATD1Q8NB37 220 aa9.32□□□□□ -0.92
SMARCE1-216ENST00000580419 ZNF25P17030 456 aaPredicted RBP9.31□□□□□ -0.92
SMARCE1-216ENST00000580419 CFAP161Q6P656 301 aa9.31□□□□□ -0.92
SMARCE1-216ENST00000580419 GTSF1Q8WW33 167 aa9.31□□□□□ -0.92
SMARCE1-216ENST00000580419 GFRA4Q9GZZ7 299 aa9.31□□□□□ -0.92
SMARCE1-216ENST00000580419 SERTAD4-AS1Q5TG53 156 aa9.3□□□□□ -0.92
SMARCE1-216ENST00000580419 CLPSL2Q6UWE3 100 aa9.3□□□□□ -0.92
SMARCE1-216ENST00000580419 RNASE7Q9H1E1 156 aaKnown RBP9.3□□□□□ -0.92
SMARCE1-216ENST00000580419 AP5S1Q9NUS5 200 aa9.3□□□□□ -0.92
SMARCE1-216ENST00000580419 IGHV3-64A0A075B6Q5 118 aa9.29□□□□□ -0.92
SMARCE1-216ENST00000580419 AKAP14Q86UN6 197 aa9.29□□□□□ -0.92
SMARCE1-216ENST00000580419 hDV102S1A0JD36 115 aa9.28□□□□□ -0.92
SMARCE1-216ENST00000580419 GATCO43716 136 aaKnown RBP9.28□□□□□ -0.92
SMARCE1-216ENST00000580419 RPL37AP61513 92 aaKnown RBP9.28□□□□□ -0.92
SMARCE1-216ENST00000580419 IGLV10-54A0A075B6I4 117 aa9.27□□□□□ -0.93
SMARCE1-216ENST00000580419 SDHAF1A6NFY7 115 aa9.27□□□□□ -0.93
SMARCE1-216ENST00000580419 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.27□□□□□ -0.93
SMARCE1-216ENST00000580419 I3L3M4 83 aa9.26□□□□□ -0.93
SMARCE1-216ENST00000580419 APCSP02743 223 aa9.26□□□□□ -0.93
SMARCE1-216ENST00000580419 TSKUQ8WUA8 353 aa9.26□□□□□ -0.93
SMARCE1-216ENST00000580419 BORCS7Q96B45 105 aa9.26□□□□□ -0.93
SMARCE1-216ENST00000580419 TMEM191AQ9H0A3 160 aa9.26□□□□□ -0.93
SMARCE1-216ENST00000580419 OSTCQ9NRP0 149 aa9.26□□□□□ -0.93
SMARCE1-216ENST00000580419 PKIGQ9Y2B9 76 aa9.26□□□□□ -0.93
SMARCE1-216ENST00000580419 GVQW2A0A096LPI5 108 aaPredicted RBP9.25□□□□□ -0.93
SMARCE1-216ENST00000580419 LOC100996750A0A140TA64 210 aa9.25□□□□□ -0.93
SMARCE1-216ENST00000580419 SLPIP03973 132 aa9.25□□□□□ -0.93
SMARCE1-216ENST00000580419 ESDP10768 282 aa9.25□□□□□ -0.93
SMARCE1-216ENST00000580419 AMMECR1LQ6DCA0 310 aa9.25□□□□□ -0.93
SMARCE1-216ENST00000580419 ALKAL2Q6UX46 152 aa9.25□□□□□ -0.93
SMARCE1-216ENST00000580419 LINC01551Q86U37 167 aa9.25□□□□□ -0.93
SMARCE1-216ENST00000580419 C15orf56Q8N910 161 aa9.25□□□□□ -0.93
SMARCE1-216ENST00000580419 KRTAP4-6Q9BYQ5 205 aa9.25□□□□□ -0.93
SMARCE1-216ENST00000580419 TRAV26-2A0A0B4J265 109 aa9.24□□□□□ -0.93
SMARCE1-216ENST00000580419 TRBV27A0A0K0K1C4 114 aa9.24□□□□□ -0.93
SMARCE1-216ENST00000580419 A0A1B0GUT8 65 aa9.24□□□□□ -0.93
SMARCE1-216ENST00000580419 PPP1R17O96001 155 aa9.24□□□□□ -0.93
SMARCE1-216ENST00000580419 FGF6P10767 208 aa9.24□□□□□ -0.93
SMARCE1-216ENST00000580419 RPS10P46783 165 aaKnown RBP9.24□□□□□ -0.93
SMARCE1-216ENST00000580419 Q6ZRU5 148 aa9.24□□□□□ -0.93
SMARCE1-216ENST00000580419 MRPL52Q86TS9 123 aaKnown RBP9.24□□□□□ -0.93
SMARCE1-216ENST00000580419 OR5A1Q8NGJ0 315 aa9.24□□□□□ -0.93
SMARCE1-216ENST00000580419 SPACA4Q8TDM5 124 aa9.24□□□□□ -0.93
SMARCE1-216ENST00000580419 RPL39LQ96EH5 51 aaKnown RBP9.24□□□□□ -0.93
SMARCE1-216ENST00000580419 MRAP2Q96G30 205 aa9.24□□□□□ -0.93
SMARCE1-216ENST00000580419 SMIM7Q9BQ49 75 aa9.24□□□□□ -0.93
SMARCE1-216ENST00000580419 PLAC8Q9NZF1 115 aa9.24□□□□□ -0.93
SMARCE1-216ENST00000580419 PANO1I0J062 215 aa9.23□□□□□ -0.93
SMARCE1-216ENST00000580419 CCL25O15444 150 aa9.23□□□□□ -0.93
SMARCE1-216ENST00000580419 POLR2KP53803 58 aaKnown RBP9.23□□□□□ -0.93
SMARCE1-216ENST00000580419 HMCN2Q8NDA2 5059 aa9.23□□□□□ -0.93
SMARCE1-216ENST00000580419 GAGE12HA6NDE8 117 aa9.22□□□□□ -0.93
SMARCE1-216ENST00000580419 HIGD1CA8MV81 97 aa9.22□□□□□ -0.93
SMARCE1-216ENST00000580419 PMCHP20382 165 aa9.22□□□□□ -0.93
SMARCE1-216ENST00000580419 FAM74A3Q4VXF1 159 aa9.22□□□□□ -0.93
SMARCE1-216ENST00000580419 CHCHD10Q8WYQ3 142 aaPredicted RBP9.22□□□□□ -0.93
SMARCE1-216ENST00000580419 BTF3L4Q96K17 158 aa9.22□□□□□ -0.93
SMARCE1-216ENST00000580419 ST20Q9HBF5 79 aa9.22□□□□□ -0.93
SMARCE1-216ENST00000580419 CSDC2Q9Y534 153 aaKnown RBP9.22□□□□□ -0.93
SMARCE1-216ENST00000580419 SMAGPQ0VAQ4 97 aa9.21□□□□□ -0.94
SMARCE1-216ENST00000580419 TMEM101Q96IK0 257 aa9.21□□□□□ -0.94
SMARCE1-216ENST00000580419 EIF5A2Q9GZV4 153 aaKnown RBP9.21□□□□□ -0.94
SMARCE1-216ENST00000580419 LINC00474Q9P2X8 69 aa9.21□□□□□ -0.94
SMARCE1-216ENST00000580419 A0A087WYN8 130 aa9.2□□□□□ -0.94
SMARCE1-216ENST00000580419 ZNF727A8MUV8 499 aa9.2□□□□□ -0.94
SMARCE1-216ENST00000580419 TSHBP01222 138 aa9.2□□□□□ -0.94
SMARCE1-216ENST00000580419 RAB4AP20338 218 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms