RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 TSHBP01222 138 aa7.45□□□□□ -1.22
SS18-213ENST00000579640 S100A6P06703 90 aa7.45□□□□□ -1.22
SS18-213ENST00000579640 NDUFA6P56556 154 aa7.45□□□□□ -1.22
SS18-213ENST00000579640 TIRAPP58753 221 aa7.45□□□□□ -1.22
SS18-213ENST00000579640 LAGE3Q14657 143 aa7.45□□□□□ -1.22
SS18-213ENST00000579640 RNASEKQ6P5S7 137 aaKnown RBP7.45□□□□□ -1.22
SS18-213ENST00000579640 URB1-AS1Q96HZ7 61 aa7.45□□□□□ -1.22
SS18-213ENST00000579640 G0S2P27469 103 aa7.45□□□□□ -1.22
SS18-213ENST00000579640 MUC7Q8TAX7 377 aa7.45□□□□□ -1.22
SS18-213ENST00000579640 SERF1AO75920 110 aa7.44□□□□□ -1.22
SS18-213ENST00000579640 DNAH7Q8WXX0 4024 aa7.44□□□□□ -1.22
SS18-213ENST00000579640 TRBV25-1A0A075B6N4 114 aa7.43□□□□□ -1.22
SS18-213ENST00000579640 TRBV6-8A0A0A6YYG3 113 aa7.43□□□□□ -1.22
SS18-213ENST00000579640 IGHV1-24A0A0C4DH33 117 aa7.43□□□□□ -1.22
SS18-213ENST00000579640 HSBP1O75506 76 aa7.43□□□□□ -1.22
SS18-213ENST00000579640 ESDP10768 282 aa7.43□□□□□ -1.22
SS18-213ENST00000579640 AMTP48728 403 aa7.43□□□□□ -1.22
SS18-213ENST00000579640 LINC01549A6NIU2 74 aa7.43□□□□□ -1.22
SS18-213ENST00000579640 LINC00310P59036 64 aa7.43□□□□□ -1.22
SS18-213ENST00000579640 LELP1Q5T871 98 aa7.43□□□□□ -1.22
SS18-213ENST00000579640 LYPD5Q6UWN5 251 aa7.43□□□□□ -1.22
SS18-213ENST00000579640 NTM-AS1Q6ZSK4 140 aa7.43□□□□□ -1.22
SS18-213ENST00000579640 TMEM18Q96B42 140 aa7.43□□□□□ -1.22
SS18-213ENST00000579640 TMEM243Q9BU79 118 aa7.42□□□□□ -1.22
SS18-213ENST00000579640 CHCHD7Q9BUK0 85 aa7.42□□□□□ -1.22
SS18-213ENST00000579640 APLNQ9ULZ1 77 aa7.42□□□□□ -1.22
SS18-213ENST00000579640 TMA7Q9Y2S6 64 aaKnown RBP7.42□□□□□ -1.22
SS18-213ENST00000579640 H7C423 109 aa7.41□□□□□ -1.22
SS18-213ENST00000579640 HBDP02042 147 aa7.41□□□□□ -1.22
SS18-213ENST00000579640 SMAGPQ0VAQ4 97 aa7.41□□□□□ -1.22
SS18-213ENST00000579640 C20orf203Q8NBC4 194 aa7.41□□□□□ -1.22
SS18-213ENST00000579640 DEFB104AQ8WTQ1 72 aa7.41□□□□□ -1.22
SS18-213ENST00000579640 NUPR1O60356 82 aa7.41□□□□□ -1.22
SS18-213ENST00000579640 CCL18P55774 89 aa7.41□□□□□ -1.22
SS18-213ENST00000579640 PKIAP61925 76 aa7.41□□□□□ -1.22
SS18-213ENST00000579640 ESRGQ1W209 222 aa7.41□□□□□ -1.22
SS18-213ENST00000579640 CYSLTR1Q9Y271 337 aa7.41□□□□□ -1.22
SS18-213ENST00000579640 DYNC2H1Q8NCM8 4307 aaKnown RBP7.4□□□□□ -1.22
SS18-213ENST00000579640 TRAV8-6A0A0B4J262 113 aa7.4□□□□□ -1.23
SS18-213ENST00000579640 C3orf84H3BNL1 204 aa7.4□□□□□ -1.23
SS18-213ENST00000579640 UBE2L6O14933 153 aa7.4□□□□□ -1.23
SS18-213ENST00000579640 BTF3P20290 206 aaKnown RBP7.4□□□□□ -1.23
SS18-213ENST00000579640 ZFAND6Q6FIF0 208 aa7.4□□□□□ -1.23
SS18-213ENST00000579640 C2orf66Q6UXQ4 117 aa7.4□□□□□ -1.23
SS18-213ENST00000579640 C5orf52A6NGY3 159 aa7.39□□□□□ -1.23
SS18-213ENST00000579640 TOMM6Q96B49 74 aa7.39□□□□□ -1.23
SS18-213ENST00000579640 CHCHD5Q9BSY4 110 aa7.39□□□□□ -1.23
SS18-213ENST00000579640 A0A096LNJ9 63 aa7.38□□□□□ -1.23
SS18-213ENST00000579640 SNRPEP62304 92 aaKnown RBP7.38□□□□□ -1.23
SS18-213ENST00000579640 PMCHL1Q16048 86 aa7.38□□□□□ -1.23
SS18-213ENST00000579640 FAM19A2Q8N3H0 131 aa7.38□□□□□ -1.23
SS18-213ENST00000579640 PACRGQ96M98 296 aaPredicted RBP7.38□□□□□ -1.23
SS18-213ENST00000579640 MRPS16Q9Y3D3 137 aaKnown RBP7.38□□□□□ -1.23
SS18-213ENST00000579640 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.38□□□□□ -1.23
SS18-213ENST00000579640 IGKV2-29A2NJV5 120 aaPredicted RBP7.38□□□□□ -1.23
SS18-213ENST00000579640 S100A2P29034 98 aa7.38□□□□□ -1.23
SS18-213ENST00000579640 PDZD11Q5EBL8 140 aa7.38□□□□□ -1.23
SS18-213ENST00000579640 MRPL52Q86TS9 123 aaKnown RBP7.38□□□□□ -1.23
SS18-213ENST00000579640 HIST3H2BBQ8N257 126 aa7.38□□□□□ -1.23
SS18-213ENST00000579640 TIMM21Q9BVV7 248 aa7.38□□□□□ -1.23
SS18-213ENST00000579640 SPANXA1Q9NS26 97 aa7.38□□□□□ -1.23
SS18-213ENST00000579640 PYGO1Q9Y3Y4 419 aa7.38□□□□□ -1.23
SS18-213ENST00000579640 NPSP0C0P6 89 aa7.37□□□□□ -1.23
SS18-213ENST00000579640 ZNF25P17030 456 aaPredicted RBP7.37□□□□□ -1.23
SS18-213ENST00000579640 RPL39P62891 51 aaKnown RBP7.37□□□□□ -1.23
SS18-213ENST00000579640 UPK3BQ9BT76 320 aa7.37□□□□□ -1.23
SS18-213ENST00000579640 LINC00588Q9Y4M8 146 aa7.37□□□□□ -1.23
SS18-213ENST00000579640 ATP5LO75964 103 aa7.36□□□□□ -1.23
SS18-213ENST00000579640 LEPROTL1O95214 131 aa7.36□□□□□ -1.23
SS18-213ENST00000579640 FGF6P10767 208 aa7.36□□□□□ -1.23
SS18-213ENST00000579640 GAGE6Q13070 117 aa7.36□□□□□ -1.23
SS18-213ENST00000579640 AMMECR1LQ6DCA0 310 aa7.36□□□□□ -1.23
SS18-213ENST00000579640 ERASQ7Z444 233 aa7.36□□□□□ -1.23
SS18-213ENST00000579640 TMEM141Q96I45 108 aa7.36□□□□□ -1.23
SS18-213ENST00000579640 SCGB3A1Q96QR1 104 aa7.36□□□□□ -1.23
SS18-213ENST00000579640 TIMM17AQ99595 171 aa7.36□□□□□ -1.23
SS18-213ENST00000579640 HSPB8Q9UJY1 196 aa7.36□□□□□ -1.23
SS18-213ENST00000579640 UBE2D4Q9Y2X8 147 aa7.36□□□□□ -1.23
SS18-213ENST00000579640 CSDC2Q9Y534 153 aaKnown RBP7.36□□□□□ -1.23
SS18-213ENST00000579640 A0A1B0GUV1 79 aa7.36□□□□□ -1.23
SS18-213ENST00000579640 TMEM262E9PQX1 116 aa7.36□□□□□ -1.23
SS18-213ENST00000579640 CASC10Q5T4H9 136 aa7.36□□□□□ -1.23
SS18-213ENST00000579640 DGAT2L7PQ6IED9 249 aa7.36□□□□□ -1.23
SS18-213ENST00000579640 TMEM101Q96IK0 257 aa7.36□□□□□ -1.23
SS18-213ENST00000579640 A0A087WX48 190 aa7.35□□□□□ -1.23
SS18-213ENST00000579640 IGIPA6NJ69 53 aa7.35□□□□□ -1.23
SS18-213ENST00000579640 PAPPA-AS1Q5QFB9 102 aa7.35□□□□□ -1.23
SS18-213ENST00000579640 UBE2DNLQ8IWF7 75 aa7.35□□□□□ -1.23
SS18-213ENST00000579640 OR5A1Q8NGJ0 315 aa7.35□□□□□ -1.23
SS18-213ENST00000579640 CSMD3Q7Z407 3707 aa7.34□□□□□ -1.23
SS18-213ENST00000579640 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.34□□□□□ -1.23
SS18-213ENST00000579640 MRPS36P82909 103 aaKnown RBP7.34□□□□□ -1.23
SS18-213ENST00000579640 WFDC10BQ8IUB3 73 aa7.34□□□□□ -1.23
SS18-213ENST00000579640 FABP4P15090 132 aa7.34□□□□□ -1.24
SS18-213ENST00000579640 RBX1P62877 108 aa7.34□□□□□ -1.24
SS18-213ENST00000579640 LINC01556Q5JQF7 62 aa7.34□□□□□ -1.24
SS18-213ENST00000579640 IFI27L1Q96BM0 104 aa7.34□□□□□ -1.24
SS18-213ENST00000579640 HIST1H2BLQ99880 126 aa7.34□□□□□ -1.24
SS18-213ENST00000579640 SIVA1O15304 175 aa7.33□□□□□ -1.24
SS18-213ENST00000579640 DNAH10OSP0CZ25 163 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 223 ms