RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 TRGV10A0A0A0MS01 117 aa2.7□□□□□ -1.98
NUP88-213ENST00000576862 LYNX1G3V0Z9 82 aa2.7□□□□□ -1.98
NUP88-213ENST00000576862 M0R2P5 195 aa2.7□□□□□ -1.98
NUP88-213ENST00000576862 KALRNO60229 2985 aa2.7□□□□□ -1.98
NUP88-213ENST00000576862 YPEL1O60688 119 aa2.7□□□□□ -1.98
NUP88-213ENST00000576862 IGHV3-7P01780 117 aa2.7□□□□□ -1.98
NUP88-213ENST00000576862 SLC25A5P05141 298 aaKnown RBP2.7□□□□□ -1.98
NUP88-213ENST00000576862 CXCL1P09341 107 aa2.7□□□□□ -1.98
NUP88-213ENST00000576862 INAFM2P0DMQ5 153 aa2.7□□□□□ -1.98
NUP88-213ENST00000576862 LYNX1P0DP58 116 aa2.7□□□□□ -1.98
NUP88-213ENST00000576862 GZMBP10144 247 aa2.7□□□□□ -1.98
NUP88-213ENST00000576862 EDDM3BP56851 147 aa2.7□□□□□ -1.98
NUP88-213ENST00000576862 IQCJQ1A5X6 159 aa2.7□□□□□ -1.98
NUP88-213ENST00000576862 FAM104BQ5XKR9 115 aa2.7□□□□□ -1.98
NUP88-213ENST00000576862 ITLN2Q8WWU7 325 aaPredicted RBP2.7□□□□□ -1.98
NUP88-213ENST00000576862 LEAP2Q969E1 77 aa2.7□□□□□ -1.98
NUP88-213ENST00000576862 PRELID3AQ96N28 172 aa2.7□□□□□ -1.98
NUP88-213ENST00000576862 VAMP8Q9BV40 100 aa2.7□□□□□ -1.98
NUP88-213ENST00000576862 REG4Q9BYZ8 158 aa2.7□□□□□ -1.98
NUP88-213ENST00000576862 C11orf1Q9H5F2 150 aa2.7□□□□□ -1.98
NUP88-213ENST00000576862 LINC00574Q9H8X3 128 aa2.7□□□□□ -1.98
NUP88-213ENST00000576862 TMEM106BQ9NUM4 274 aa2.7□□□□□ -1.98
NUP88-213ENST00000576862 ATMQ13315 3056 aa2.7□□□□□ -1.98
NUP88-213ENST00000576862 PLCE1Q9P212 2302 aa2.7□□□□□ -1.98
NUP88-213ENST00000576862 SPENQ96T58 3664 aaKnown RBP2.7□□□□□ -1.98
NUP88-213ENST00000576862 MED12LQ86YW9 2145 aa2.69□□□□□ -1.98
NUP88-213ENST00000576862 FLNCQ14315 2725 aa2.69□□□□□ -1.98
NUP88-213ENST00000576862 PKDREJQ9NTG1 2253 aa2.69□□□□□ -1.98
NUP88-213ENST00000576862 C17orf98A8MV24 154 aa2.69□□□□□ -1.98
NUP88-213ENST00000576862 H3BT86 120 aa2.69□□□□□ -1.98
NUP88-213ENST00000576862 BPY2O14599 106 aa2.69□□□□□ -1.98
NUP88-213ENST00000576862 SYNGR2O43760 224 aa2.69□□□□□ -1.98
NUP88-213ENST00000576862 PITX3O75364 302 aa2.69□□□□□ -1.98
NUP88-213ENST00000576862 LY6HO94772 140 aa2.69□□□□□ -1.98
NUP88-213ENST00000576862 MT-ND6P03923 174 aa2.69□□□□□ -1.98
NUP88-213ENST00000576862 NMBP08949 121 aa2.69□□□□□ -1.98
NUP88-213ENST00000576862 IGHV1-8P0DP01 117 aa2.69□□□□□ -1.98
NUP88-213ENST00000576862 NPPCP23582 126 aa2.69□□□□□ -1.98
NUP88-213ENST00000576862 COL8A2P25067 703 aa2.69□□□□□ -1.98
NUP88-213ENST00000576862 RPL39P5Q59GN2 51 aa2.69□□□□□ -1.98
NUP88-213ENST00000576862 FAM74A1Q5RGS3 127 aa2.69□□□□□ -1.98
NUP88-213ENST00000576862 ALKAL2Q6UX46 152 aa2.69□□□□□ -1.98
NUP88-213ENST00000576862 BPIFA4PQ86YQ2 179 aa2.69□□□□□ -1.98
NUP88-213ENST00000576862 DAND5Q8N907 189 aa2.69□□□□□ -1.98
NUP88-213ENST00000576862 DIRC1Q969H9 104 aa2.69□□□□□ -1.98
NUP88-213ENST00000576862 RBMXL1Q96E39 390 aaKnown RBP2.69□□□□□ -1.98
NUP88-213ENST00000576862 LINC00052Q96N35 136 aa2.69□□□□□ -1.98
NUP88-213ENST00000576862 SLC35B3Q9H1N7 401 aa2.69□□□□□ -1.98
NUP88-213ENST00000576862 C8orf17Q9NRJ1 99 aa2.69□□□□□ -1.98
NUP88-213ENST00000576862 ZNRD1Q9P1U0 126 aa2.69□□□□□ -1.98
NUP88-213ENST00000576862 LINC00588Q9Y4M8 146 aa2.69□□□□□ -1.98
NUP88-213ENST00000576862 SERP1Q9Y6X1 66 aa2.69□□□□□ -1.98
NUP88-213ENST00000576862 SHANK1Q9Y566 2161 aa2.68□□□□□ -1.98
NUP88-213ENST00000576862 COL6A6A6NMZ7 2263 aa2.68□□□□□ -1.98
NUP88-213ENST00000576862 IGHV3-21A0A0B4J1V1 117 aa2.68□□□□□ -1.98
NUP88-213ENST00000576862 TRAV40A0A0B4J280 105 aa2.68□□□□□ -1.98
NUP88-213ENST00000576862 KANTRA0A1W2PQU2 76 aa2.68□□□□□ -1.98
NUP88-213ENST00000576862 SSSCA1O60232 199 aa2.68□□□□□ -1.98
NUP88-213ENST00000576862 HBDP02042 147 aa2.68□□□□□ -1.98
NUP88-213ENST00000576862 PRB1P04280 392 aa2.68□□□□□ -1.98
NUP88-213ENST00000576862 ZNF688P0C7X2 276 aa2.68□□□□□ -1.98
NUP88-213ENST00000576862 TRGC1P0CF51 173 aa2.68□□□□□ -1.98
NUP88-213ENST00000576862 SAA2P0DJI9 122 aaPredicted RBP2.68□□□□□ -1.98
NUP88-213ENST00000576862 IGHV3-30-3P0DP02 117 aa2.68□□□□□ -1.98
NUP88-213ENST00000576862 CCL3L1P16619 93 aa2.68□□□□□ -1.98
NUP88-213ENST00000576862 RNASE4P34096 147 aaKnown RBP2.68□□□□□ -1.98
NUP88-213ENST00000576862 ZNF816Q0VGE8 651 aaPredicted RBP2.68□□□□□ -1.98
NUP88-213ENST00000576862 RNASE13Q5GAN3 156 aaKnown RBP2.68□□□□□ -1.98
NUP88-213ENST00000576862 KPRPQ5T749 579 aaPredicted RBP2.68□□□□□ -1.98
NUP88-213ENST00000576862 C9orf153Q5TBE3 101 aa2.68□□□□□ -1.98
NUP88-213ENST00000576862 RPL7L1Q6DKI1 246 aaKnown RBP2.68□□□□□ -1.98
NUP88-213ENST00000576862 Q6ZUT4 128 aa2.68□□□□□ -1.98
NUP88-213ENST00000576862 LSM10Q969L4 123 aaKnown RBP2.68□□□□□ -1.98
NUP88-213ENST00000576862 SHANK2-AS3Q9BTD1 123 aa2.68□□□□□ -1.98
NUP88-213ENST00000576862 NPCDR1Q9BY65 106 aa2.68□□□□□ -1.98
NUP88-213ENST00000576862 KAAG1Q9UBP8 84 aa2.68□□□□□ -1.98
NUP88-213ENST00000576862 LINC00312Q9Y6C7 94 aa2.68□□□□□ -1.98
NUP88-213ENST00000576862 INTS1Q8N201 2190 aaKnown RBP2.68□□□□□ -1.98
NUP88-213ENST00000576862 PCNX1Q96RV3 2341 aa2.68□□□□□ -1.98
NUP88-213ENST00000576862 IGHV3-49A0A0A0MS15 119 aa2.67□□□□□ -1.98
NUP88-213ENST00000576862 FAM24AA6NFZ4 105 aa2.67□□□□□ -1.98
NUP88-213ENST00000576862 TRACP01848 142 aa2.67□□□□□ -1.98
NUP88-213ENST00000576862 RBP4P02753 201 aa2.67□□□□□ -1.98
NUP88-213ENST00000576862 SLC25A6P12236 298 aa2.67□□□□□ -1.98
NUP88-213ENST00000576862 TPT1P13693 172 aaKnown RBP2.67□□□□□ -1.98
NUP88-213ENST00000576862 RPL27AP46776 148 aaKnown RBP2.67□□□□□ -1.98
NUP88-213ENST00000576862 FXYD7P58549 80 aa2.67□□□□□ -1.98
NUP88-213ENST00000576862 TSPEAR-AS2P59090 65 aa2.67□□□□□ -1.98
NUP88-213ENST00000576862 MRPS36P82909 103 aaKnown RBP2.67□□□□□ -1.98
NUP88-213ENST00000576862 PRB3Q04118 309 aaPredicted RBP2.67□□□□□ -1.98
NUP88-213ENST00000576862 Q0VG73 95 aa2.67□□□□□ -1.98
NUP88-213ENST00000576862 MRPL51Q4U2R6 128 aaKnown RBP2.67□□□□□ -1.98
NUP88-213ENST00000576862 HEPN1Q6WQI6 88 aa2.67□□□□□ -1.98
NUP88-213ENST00000576862 ZNF705AQ6ZN79 300 aaPredicted RBP2.67□□□□□ -1.98
NUP88-213ENST00000576862 C7orf65Q6ZTY9 151 aa2.67□□□□□ -1.98
NUP88-213ENST00000576862 ZFAND2AQ8N6M9 145 aa2.67□□□□□ -1.98
NUP88-213ENST00000576862 WFDC11Q8NEX6 87 aa2.67□□□□□ -1.98
NUP88-213ENST00000576862 ATP6V0E2Q8NHE4 81 aa2.67□□□□□ -1.98
NUP88-213ENST00000576862 ZNF714Q96N38 554 aa2.67□□□□□ -1.98
NUP88-213ENST00000576862 HIST1H2BLQ99880 126 aa2.67□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms