RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 SDIM1Q6ZPB5 146 aa13.52□□□□□ -0.25
VPS53-216ENST00000574029 FER1L6-AS1Q8NA97 138 aa13.52□□□□□ -0.25
VPS53-216ENST00000574029 RNASE7Q9H1E1 156 aaKnown RBP13.52□□□□□ -0.25
VPS53-216ENST00000574029 ZNF727A8MUV8 499 aa13.51□□□□□ -0.25
VPS53-216ENST00000574029 SMIM17P0DL12 118 aa13.51□□□□□ -0.25
VPS53-216ENST00000574029 IQCJQ1A5X6 159 aa13.51□□□□□ -0.25
VPS53-216ENST00000574029 FAM74A3Q4VXF1 159 aa13.51□□□□□ -0.25
VPS53-216ENST00000574029 RPP21Q9H633 154 aaKnown RBP13.51□□□□□ -0.25
VPS53-216ENST00000574029 C9JQL5 133 aa13.5□□□□□ -0.25
VPS53-216ENST00000574029 SSTP61278 116 aa13.5□□□□□ -0.25
VPS53-216ENST00000574029 CACNG7P62955 275 aa13.5□□□□□ -0.25
VPS53-216ENST00000574029 WDR73Q6P4I2 378 aa13.5□□□□□ -0.25
VPS53-216ENST00000574029 LINC01551Q86U37 167 aa13.5□□□□□ -0.25
VPS53-216ENST00000574029 CLRN3Q8NCR9 226 aa13.5□□□□□ -0.25
VPS53-216ENST00000574029 AP1S3Q96PC3 154 aa13.5□□□□□ -0.25
VPS53-216ENST00000574029 SRSF3P84103 164 aaKnown RBP13.49□□□□□ -0.25
VPS53-216ENST00000574029 IGHV1-24A0A0C4DH33 117 aa13.48□□□□□ -0.25
VPS53-216ENST00000574029 REG3AQ06141 175 aa13.48□□□□□ -0.25
VPS53-216ENST00000574029 LYZL1Q6UWQ5 148 aa13.48□□□□□ -0.25
VPS53-216ENST00000574029 M0QY20 66 aa13.47□□□□□ -0.25
VPS53-216ENST00000574029 GATCO43716 136 aaKnown RBP13.47□□□□□ -0.25
VPS53-216ENST00000574029 CTRLP40313 264 aa13.47□□□□□ -0.25
VPS53-216ENST00000574029 RAB14P61106 215 aa13.47□□□□□ -0.25
VPS53-216ENST00000574029 CNBPP62633 177 aaKnown RBP13.47□□□□□ -0.25
VPS53-216ENST00000574029 CIRBPQ14011 172 aaKnown RBP13.47□□□□□ -0.25
VPS53-216ENST00000574029 TMEM241Q24JQ0 296 aa13.47□□□□□ -0.25
VPS53-216ENST00000574029 TPPP3Q9BW30 176 aa13.47□□□□□ -0.25
VPS53-216ENST00000574029 CNFNQ9BYD5 112 aa13.47□□□□□ -0.25
VPS53-216ENST00000574029 CT83Q5H943 113 aa13.46□□□□□ -0.25
VPS53-216ENST00000574029 IGLV10-54A0A075B6I4 117 aa13.45□□□□□ -0.26
VPS53-216ENST00000574029 TRAV8-4A0A0B4J246 113 aa13.45□□□□□ -0.26
VPS53-216ENST00000574029 A8MWL6 223 aa13.45□□□□□ -0.26
VPS53-216ENST00000574029 MT1HL1P0DM35 61 aa13.45□□□□□ -0.26
VPS53-216ENST00000574029 FOXA3P55318 350 aaPredicted RBP13.45□□□□□ -0.26
VPS53-216ENST00000574029 C20orf203Q8NBC4 194 aa13.45□□□□□ -0.26
VPS53-216ENST00000574029 OSTCQ9NRP0 149 aa13.45□□□□□ -0.26
VPS53-216ENST00000574029 H7C1H1 209 aa13.44□□□□□ -0.26
VPS53-216ENST00000574029 NTF3P20783 257 aa13.44□□□□□ -0.26
VPS53-216ENST00000574029 Q6ZRU5 148 aa13.44□□□□□ -0.26
VPS53-216ENST00000574029 GTSF1Q8WW33 167 aa13.44□□□□□ -0.26
VPS53-216ENST00000574029 A0A1B0GUV1 79 aa13.43□□□□□ -0.26
VPS53-216ENST00000574029 hDV102S1A0JD36 115 aa13.43□□□□□ -0.26
VPS53-216ENST00000574029 MGPP08493 103 aa13.43□□□□□ -0.26
VPS53-216ENST00000574029 IFITM2Q01629 132 aa13.43□□□□□ -0.26
VPS53-216ENST00000574029 CLLU1Q5K131 121 aa13.43□□□□□ -0.26
VPS53-216ENST00000574029 SUMO4Q6EEV6 95 aa13.43□□□□□ -0.26
VPS53-216ENST00000574029 NAT8Q9UHE5 227 aa13.43□□□□□ -0.26
VPS53-216ENST00000574029 RPL23P62829 140 aaKnown RBP13.42□□□□□ -0.26
VPS53-216ENST00000574029 ISOC2Q96AB3 205 aa13.42□□□□□ -0.26
VPS53-216ENST00000574029 IGLV4-60A0A075B6I1 120 aa13.41□□□□□ -0.26
VPS53-216ENST00000574029 FAM231BA6NCW3 169 aa13.41□□□□□ -0.26
VPS53-216ENST00000574029 SLPIP03973 132 aa13.41□□□□□ -0.26
VPS53-216ENST00000574029 TRGC1P0CF51 173 aa13.41□□□□□ -0.26
VPS53-216ENST00000574029 TMEM243Q9BU79 118 aa13.41□□□□□ -0.26
VPS53-216ENST00000574029 GFRA4Q9GZZ7 299 aa13.41□□□□□ -0.26
VPS53-216ENST00000574029 IGHV3-64A0A075B6Q5 118 aa13.4□□□□□ -0.26
VPS53-216ENST00000574029 TSKUQ8WUA8 353 aa13.4□□□□□ -0.26
VPS53-216ENST00000574029 RNF185Q96GF1 192 aa13.4□□□□□ -0.26
VPS53-216ENST00000574029 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.39□□□□□ -0.27
VPS53-216ENST00000574029 TWIST1Q15672 202 aa13.39□□□□□ -0.27
VPS53-216ENST00000574029 RASL11AQ6T310 242 aa13.39□□□□□ -0.27
VPS53-216ENST00000574029 PGLYRP4Q96LB8 373 aa13.39□□□□□ -0.27
VPS53-216ENST00000574029 AP5S1Q9NUS5 200 aa13.39□□□□□ -0.27
VPS53-216ENST00000574029 V9GYV3 84 aa13.39□□□□□ -0.27
VPS53-216ENST00000574029 A0A087WYN8 130 aa13.38□□□□□ -0.27
VPS53-216ENST00000574029 DPH3P1Q9H4G8 78 aa13.38□□□□□ -0.27
VPS53-216ENST00000574029 CHTF8P0CG12 524 aa13.37□□□□□ -0.27
VPS53-216ENST00000574029 ADIRFQ15847 76 aa13.37□□□□□ -0.27
VPS53-216ENST00000574029 SPACA4Q8TDM5 124 aa13.37□□□□□ -0.27
VPS53-216ENST00000574029 NIT2Q9NQR4 276 aa13.37□□□□□ -0.27
VPS53-216ENST00000574029 DPH3Q96FX2 82 aa13.36□□□□□ -0.27
VPS53-216ENST00000574029 HIGD1CA8MV81 97 aa13.35□□□□□ -0.27
VPS53-216ENST00000574029 PLAC8Q9NZF1 115 aa13.34□□□□□ -0.27
VPS53-216ENST00000574029 UBE2L6O14933 153 aa13.33□□□□□ -0.28
VPS53-216ENST00000574029 C15orf56Q8N910 161 aa13.33□□□□□ -0.28
VPS53-216ENST00000574029 A0A1B0GUT8 65 aa13.32□□□□□ -0.28
VPS53-216ENST00000574029 AMTP48728 403 aa13.32□□□□□ -0.28
VPS53-216ENST00000574029 COTL1Q14019 142 aa13.32□□□□□ -0.28
VPS53-216ENST00000574029 SMIM15Q7Z3B0 74 aa13.32□□□□□ -0.28
VPS53-216ENST00000574029 BORCS7Q96B45 105 aa13.32□□□□□ -0.28
VPS53-216ENST00000574029 SMIM27A0A1W2PRY6 76 aa13.31□□□□□ -0.28
VPS53-216ENST00000574029 NUP35Q8NFH5 326 aa13.31□□□□□ -0.28
VPS53-216ENST00000574029 GAGE12HA6NDE8 117 aa13.3□□□□□ -0.28
VPS53-216ENST00000574029 CFAP161Q6P656 301 aa13.3□□□□□ -0.28
VPS53-216ENST00000574029 UQCC3Q6UW78 93 aa13.3□□□□□ -0.28
VPS53-216ENST00000574029 NAT8BQ9UHF3 227 aa13.3□□□□□ -0.28
VPS53-216ENST00000574029 PHOX2AO14813 284 aa13.29□□□□□ -0.28
VPS53-216ENST00000574029 RPS10P46783 165 aaKnown RBP13.28□□□□□ -0.28
VPS53-216ENST00000574029 COX6A2Q02221 97 aa13.28□□□□□ -0.28
VPS53-216ENST00000574029 PNRC1Q12796 327 aaPredicted RBP13.28□□□□□ -0.28
VPS53-216ENST00000574029 RIGQ13278 110 aa13.28□□□□□ -0.28
VPS53-216ENST00000574029 GATD1Q8NB37 220 aa13.28□□□□□ -0.28
VPS53-216ENST00000574029 C7orf33Q8WU49 177 aa13.28□□□□□ -0.28
VPS53-216ENST00000574029 TMEM191AQ9H0A3 160 aa13.28□□□□□ -0.28
VPS53-216ENST00000574029 PRSS3P2Q8NHM4 247 aa13.26□□□□□ -0.29
VPS53-216ENST00000574029 IGKV3OR2-268A0A0C4DH90 116 aa13.25□□□□□ -0.29
VPS53-216ENST00000574029 PPP1R2P9O14990 202 aa13.25□□□□□ -0.29
VPS53-216ENST00000574029 HIGD2BQ4VC39 106 aa13.25□□□□□ -0.29
VPS53-216ENST00000574029 GVQW2A0A096LPI5 108 aaPredicted RBP13.24□□□□□ -0.29
VPS53-216ENST00000574029 TRAV26-2A0A0B4J265 109 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms