RNA–Protein interactions for RNA: ENST00000572043.5

CTDNEP1-207, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 3 BASIC

Gene CTDNEP1, Length 857 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-207ENST00000572043 C9JQL5 133 aa11.65□□□□□ -0.54
CTDNEP1-207ENST00000572043 UBE2L6O14933 153 aa11.65□□□□□ -0.54
CTDNEP1-207ENST00000572043 C20orf203Q8NBC4 194 aa11.65□□□□□ -0.54
CTDNEP1-207ENST00000572043 HIGD1CA8MV81 97 aa11.64□□□□□ -0.55
CTDNEP1-207ENST00000572043 NDUFS6O75380 124 aaKnown RBP11.64□□□□□ -0.55
CTDNEP1-207ENST00000572043 SRSF3P84103 164 aaKnown RBP11.64□□□□□ -0.55
CTDNEP1-207ENST00000572043 REG3AQ06141 175 aa11.64□□□□□ -0.55
CTDNEP1-207ENST00000572043 TEX261Q6UWH6 196 aa11.64□□□□□ -0.55
CTDNEP1-207ENST00000572043 TSKUQ8WUA8 353 aa11.64□□□□□ -0.55
CTDNEP1-207ENST00000572043 OSTCQ9NRP0 149 aa11.64□□□□□ -0.55
CTDNEP1-207ENST00000572043 PRR34Q9NV39 138 aa11.64□□□□□ -0.55
CTDNEP1-207ENST00000572043 USP17L23D6RBM5 183 aa11.63□□□□□ -0.55
CTDNEP1-207ENST00000572043 GFRA4Q9GZZ7 299 aa11.63□□□□□ -0.55
CTDNEP1-207ENST00000572043 GAS8-AS1O95177 125 aa11.62□□□□□ -0.55
CTDNEP1-207ENST00000572043 TMEM241Q24JQ0 296 aa11.62□□□□□ -0.55
CTDNEP1-207ENST00000572043 ISOC2Q96AB3 205 aa11.62□□□□□ -0.55
CTDNEP1-207ENST00000572043 A0A1B0GUT8 65 aa11.61□□□□□ -0.55
CTDNEP1-207ENST00000572043 RPL23P62829 140 aaKnown RBP11.61□□□□□ -0.55
CTDNEP1-207ENST00000572043 ADIRFQ15847 76 aa11.61□□□□□ -0.55
CTDNEP1-207ENST00000572043 C14orf177Q52M58 125 aa11.61□□□□□ -0.55
CTDNEP1-207ENST00000572043 V9GYV3 84 aa11.61□□□□□ -0.55
CTDNEP1-207ENST00000572043 SDHAF1A6NFY7 115 aa11.6□□□□□ -0.55
CTDNEP1-207ENST00000572043 INAFM2P0DMQ5 153 aa11.6□□□□□ -0.55
CTDNEP1-207ENST00000572043 PEA15Q15121 130 aa11.6□□□□□ -0.55
CTDNEP1-207ENST00000572043 KRTAP26-1Q6PEX3 210 aa11.6□□□□□ -0.55
CTDNEP1-207ENST00000572043 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.59□□□□□ -0.55
CTDNEP1-207ENST00000572043 IGKV3OR2-268A0A0C4DH90 116 aa11.59□□□□□ -0.55
CTDNEP1-207ENST00000572043 A0A1B0GUV1 79 aa11.59□□□□□ -0.55
CTDNEP1-207ENST00000572043 IGKV2-29A2NJV5 120 aaPredicted RBP11.59□□□□□ -0.55
CTDNEP1-207ENST00000572043 FAM229AH3BQW9 127 aa11.59□□□□□ -0.55
CTDNEP1-207ENST00000572043 FAM74A3Q4VXF1 159 aa11.59□□□□□ -0.55
CTDNEP1-207ENST00000572043 Q6ZSA8 131 aa11.59□□□□□ -0.55
CTDNEP1-207ENST00000572043 AMN1Q8IY45 258 aa11.59□□□□□ -0.55
CTDNEP1-207ENST00000572043 APCSP02743 223 aa11.58□□□□□ -0.56
CTDNEP1-207ENST00000572043 PRSS1P07477 247 aa11.58□□□□□ -0.56
CTDNEP1-207ENST00000572043 PMCHP20382 165 aa11.58□□□□□ -0.56
CTDNEP1-207ENST00000572043 NUP35Q8NFH5 326 aa11.58□□□□□ -0.56
CTDNEP1-207ENST00000572043 RNF185Q96GF1 192 aa11.58□□□□□ -0.56
CTDNEP1-207ENST00000572043 TMEM191AQ9H0A3 160 aa11.58□□□□□ -0.56
CTDNEP1-207ENST00000572043 NAT8Q9UHE5 227 aa11.58□□□□□ -0.56
CTDNEP1-207ENST00000572043 FAM231BA6NCW3 169 aa11.57□□□□□ -0.56
CTDNEP1-207ENST00000572043 RIGQ13278 110 aa11.57□□□□□ -0.56
CTDNEP1-207ENST00000572043 AMMECR1LQ6DCA0 310 aa11.57□□□□□ -0.56
CTDNEP1-207ENST00000572043 RNASEKQ6P5S7 137 aaKnown RBP11.57□□□□□ -0.56
CTDNEP1-207ENST00000572043 SMKR1H3BMG3 65 aa11.56□□□□□ -0.56
CTDNEP1-207ENST00000572043 I3L3M4 83 aa11.56□□□□□ -0.56
CTDNEP1-207ENST00000572043 NCR2O95944 276 aa11.56□□□□□ -0.56
CTDNEP1-207ENST00000572043 RAB4AP20338 218 aa11.56□□□□□ -0.56
CTDNEP1-207ENST00000572043 RPS10P46783 165 aaKnown RBP11.56□□□□□ -0.56
CTDNEP1-207ENST00000572043 SCXQ7RTU7 201 aa11.56□□□□□ -0.56
CTDNEP1-207ENST00000572043 ST20Q9HBF5 79 aa11.56□□□□□ -0.56
CTDNEP1-207ENST00000572043 TRAV8-4A0A0B4J246 113 aa11.55□□□□□ -0.56
CTDNEP1-207ENST00000572043 TRBV6-5A0A0K0K1A5 114 aa11.55□□□□□ -0.56
CTDNEP1-207ENST00000572043 TMEM242Q9NWH2 141 aa11.55□□□□□ -0.56
CTDNEP1-207ENST00000572043 NAT8BQ9UHF3 227 aa11.55□□□□□ -0.56
CTDNEP1-207ENST00000572043 FGF6P10767 208 aa11.54□□□□□ -0.56
CTDNEP1-207ENST00000572043 TSHBP01222 138 aa11.53□□□□□ -0.56
CTDNEP1-207ENST00000572043 LINC00528Q8N1L1 170 aa11.53□□□□□ -0.56
CTDNEP1-207ENST00000572043 MRAP2Q96G30 205 aa11.53□□□□□ -0.56
CTDNEP1-207ENST00000572043 FAT1Q14517 4588 aa11.52□□□□□ -0.56
CTDNEP1-207ENST00000572043 hDV102S1A0JD36 115 aa11.52□□□□□ -0.57
CTDNEP1-207ENST00000572043 GAGE12HA6NDE8 117 aa11.52□□□□□ -0.57
CTDNEP1-207ENST00000572043 CAMPP49913 170 aa11.52□□□□□ -0.57
CTDNEP1-207ENST00000572043 CHAC1Q9BUX1 264 aa11.51□□□□□ -0.57
CTDNEP1-207ENST00000572043 SMDT1Q9H4I9 107 aa11.51□□□□□ -0.57
CTDNEP1-207ENST00000572043 SMIM27A0A1W2PRY6 76 aa11.5□□□□□ -0.57
CTDNEP1-207ENST00000572043 H7C423 109 aa11.5□□□□□ -0.57
CTDNEP1-207ENST00000572043 DGAT2L7PQ6IED9 249 aa11.5□□□□□ -0.57
CTDNEP1-207ENST00000572043 CIRBP-AS1Q8TBR5 109 aa11.5□□□□□ -0.57
CTDNEP1-207ENST00000572043 DNAH8Q96JB1 4490 aa11.5□□□□□ -0.57
CTDNEP1-207ENST00000572043 POLR2KP53803 58 aaKnown RBP11.49□□□□□ -0.57
CTDNEP1-207ENST00000572043 CLRN3Q8NCR9 226 aa11.49□□□□□ -0.57
CTDNEP1-207ENST00000572043 TMEM101Q96IK0 257 aa11.49□□□□□ -0.57
CTDNEP1-207ENST00000572043 BTF3L4Q96K17 158 aa11.49□□□□□ -0.57
CTDNEP1-207ENST00000572043 ESDP10768 282 aa11.48□□□□□ -0.57
CTDNEP1-207ENST00000572043 MRPL51Q4U2R6 128 aaKnown RBP11.48□□□□□ -0.57
CTDNEP1-207ENST00000572043 MRPL54Q6P161 138 aaKnown RBP11.48□□□□□ -0.57
CTDNEP1-207ENST00000572043 NRACQ8N912 160 aa11.48□□□□□ -0.57
CTDNEP1-207ENST00000572043 C9orf163Q8N9P6 203 aa11.48□□□□□ -0.57
CTDNEP1-207ENST00000572043 OR5A1Q8NGJ0 315 aa11.48□□□□□ -0.57
CTDNEP1-207ENST00000572043 CHCHD10Q8WYQ3 142 aaPredicted RBP11.48□□□□□ -0.57
CTDNEP1-207ENST00000572043 TRBV27A0A0K0K1C4 114 aa11.47□□□□□ -0.57
CTDNEP1-207ENST00000572043 PLA2G1BP04054 148 aaKnown RBP11.47□□□□□ -0.57
CTDNEP1-207ENST00000572043 FCER1GP30273 86 aa11.47□□□□□ -0.57
CTDNEP1-207ENST00000572043 FAM104BQ5XKR9 115 aa11.47□□□□□ -0.57
CTDNEP1-207ENST00000572043 AP5S1Q9NUS5 200 aa11.47□□□□□ -0.57
CTDNEP1-207ENST00000572043 C7orf77A4D0Y5 90 aa11.46□□□□□ -0.57
CTDNEP1-207ENST00000572043 VCYO14598 125 aa11.46□□□□□ -0.57
CTDNEP1-207ENST00000572043 ZNF25P17030 456 aaPredicted RBP11.46□□□□□ -0.57
CTDNEP1-207ENST00000572043 SUMO2P61956 95 aaKnown RBP11.46□□□□□ -0.57
CTDNEP1-207ENST00000572043 HIGD2BQ4VC39 106 aa11.46□□□□□ -0.57
CTDNEP1-207ENST00000572043 SLPIP03973 132 aa11.45□□□□□ -0.58
CTDNEP1-207ENST00000572043 XCL1P47992 114 aa11.45□□□□□ -0.58
CTDNEP1-207ENST00000572043 RAB14P61106 215 aa11.45□□□□□ -0.58
CTDNEP1-207ENST00000572043 C15orf56Q8N910 161 aa11.45□□□□□ -0.58
CTDNEP1-207ENST00000572043 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.45□□□□□ -0.58
CTDNEP1-207ENST00000572043 PANO1I0J062 215 aa11.44□□□□□ -0.58
CTDNEP1-207ENST00000572043 PPP1R17O96001 155 aa11.44□□□□□ -0.58
CTDNEP1-207ENST00000572043 CKS2P33552 79 aa11.44□□□□□ -0.58
CTDNEP1-207ENST00000572043 CNBPP62633 177 aaKnown RBP11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 64.2 ms