RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 OXTP01178 125 aa10.34□□□□□ -0.75
CLN3-229ENST00000567963 SDIM1Q6ZPB5 146 aa10.34□□□□□ -0.75
CLN3-229ENST00000567963 PGLYRP4Q96LB8 373 aa10.34□□□□□ -0.75
CLN3-229ENST00000567963 TMEM243Q9BU79 118 aa10.34□□□□□ -0.75
CLN3-229ENST00000567963 DPH3P1Q9H4G8 78 aa10.34□□□□□ -0.75
CLN3-229ENST00000567963 BIN3Q9NQY0 253 aa10.34□□□□□ -0.75
CLN3-229ENST00000567963 BCL2P10415 239 aa10.33□□□□□ -0.76
CLN3-229ENST00000567963 TAGLN2P37802 199 aaKnown RBP10.33□□□□□ -0.76
CLN3-229ENST00000567963 RPL37AP61513 92 aaKnown RBP10.33□□□□□ -0.76
CLN3-229ENST00000567963 FAM210AQ96ND0 272 aa10.33□□□□□ -0.76
CLN3-229ENST00000567963 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.33□□□□□ -0.76
CLN3-229ENST00000567963 NDUFS6O75380 124 aaKnown RBP10.32□□□□□ -0.76
CLN3-229ENST00000567963 WDR73Q6P4I2 378 aa10.32□□□□□ -0.76
CLN3-229ENST00000567963 NUDT10Q8NFP7 164 aa10.32□□□□□ -0.76
CLN3-229ENST00000567963 NUDT11Q96G61 164 aa10.32□□□□□ -0.76
CLN3-229ENST00000567963 GFRA4Q9GZZ7 299 aa10.32□□□□□ -0.76
CLN3-229ENST00000567963 PANO1I0J062 215 aa10.31□□□□□ -0.76
CLN3-229ENST00000567963 CNBPP62633 177 aaKnown RBP10.31□□□□□ -0.76
CLN3-229ENST00000567963 SERTAD4-AS1Q5TG53 156 aa10.31□□□□□ -0.76
CLN3-229ENST00000567963 PKHD1L1Q86WI1 4243 aa10.31□□□□□ -0.76
CLN3-229ENST00000567963 hDV102S1A0JD36 115 aa10.3□□□□□ -0.76
CLN3-229ENST00000567963 LINC00862A6NCI5 91 aa10.3□□□□□ -0.76
CLN3-229ENST00000567963 CTRLP40313 264 aa10.3□□□□□ -0.76
CLN3-229ENST00000567963 CNFNQ9BYD5 112 aa10.3□□□□□ -0.76
CLN3-229ENST00000567963 UBE2L6O14933 153 aa10.3□□□□□ -0.76
CLN3-229ENST00000567963 COTL1Q14019 142 aa10.3□□□□□ -0.76
CLN3-229ENST00000567963 TWIST1Q15672 202 aa10.3□□□□□ -0.76
CLN3-229ENST00000567963 HNRNPA3P51991 378 aaKnown RBP10.29□□□□□ -0.76
CLN3-229ENST00000567963 SLPIP03973 132 aa10.28□□□□□ -0.76
CLN3-229ENST00000567963 AMTP48728 403 aa10.28□□□□□ -0.76
CLN3-229ENST00000567963 CIRBPQ14011 172 aaKnown RBP10.28□□□□□ -0.76
CLN3-229ENST00000567963 GATD1Q8NB37 220 aa10.28□□□□□ -0.76
CLN3-229ENST00000567963 OCC1Q8TAD7 63 aa10.28□□□□□ -0.76
CLN3-229ENST00000567963 RNASE7Q9H1E1 156 aaKnown RBP10.28□□□□□ -0.76
CLN3-229ENST00000567963 SMDT1Q9H4I9 107 aa10.28□□□□□ -0.76
CLN3-229ENST00000567963 RPP21Q9H633 154 aaKnown RBP10.28□□□□□ -0.76
CLN3-229ENST00000567963 K7EN84 100 aa10.27□□□□□ -0.77
CLN3-229ENST00000567963 AP5S1Q9NUS5 200 aa10.27□□□□□ -0.77
CLN3-229ENST00000567963 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.26□□□□□ -0.77
CLN3-229ENST00000567963 TRAV26-2A0A0B4J265 109 aa10.26□□□□□ -0.77
CLN3-229ENST00000567963 EIF5A2Q9GZV4 153 aaKnown RBP10.26□□□□□ -0.77
CLN3-229ENST00000567963 IGHV3-64A0A075B6Q5 118 aa10.25□□□□□ -0.77
CLN3-229ENST00000567963 TMEM250H0YL14 139 aa10.25□□□□□ -0.77
CLN3-229ENST00000567963 SRSF3P84103 164 aaKnown RBP10.25□□□□□ -0.77
CLN3-229ENST00000567963 GTSF1Q8WW33 167 aa10.25□□□□□ -0.77
CLN3-229ENST00000567963 UQCC3Q6UW78 93 aa10.24□□□□□ -0.77
CLN3-229ENST00000567963 COMMD7Q86VX2 200 aa10.24□□□□□ -0.77
CLN3-229ENST00000567963 HMCN2Q8NDA2 5059 aa10.24□□□□□ -0.77
CLN3-229ENST00000567963 SRP19P09132 144 aaKnown RBP10.23□□□□□ -0.77
CLN3-229ENST00000567963 FOXA3P55318 350 aaPredicted RBP10.23□□□□□ -0.77
CLN3-229ENST00000567963 PEA15Q15121 130 aa10.23□□□□□ -0.77
CLN3-229ENST00000567963 RPL39LQ96EH5 51 aaKnown RBP10.23□□□□□ -0.77
CLN3-229ENST00000567963 DPH3Q96FX2 82 aa10.23□□□□□ -0.77
CLN3-229ENST00000567963 IGKV3OR2-268A0A0C4DH90 116 aa10.23□□□□□ -0.77
CLN3-229ENST00000567963 GAGE12HA6NDE8 117 aa10.23□□□□□ -0.77
CLN3-229ENST00000567963 C9JQL5 133 aa10.23□□□□□ -0.77
CLN3-229ENST00000567963 NCR2O95944 276 aa10.23□□□□□ -0.77
CLN3-229ENST00000567963 CFAP161Q6P656 301 aa10.23□□□□□ -0.77
CLN3-229ENST00000567963 SMIM15Q7Z3B0 74 aa10.23□□□□□ -0.77
CLN3-229ENST00000567963 C15orf56Q8N910 161 aa10.23□□□□□ -0.77
CLN3-229ENST00000567963 A0A087WYN8 130 aa10.22□□□□□ -0.77
CLN3-229ENST00000567963 CHTF8P0CG12 524 aa10.22□□□□□ -0.77
CLN3-229ENST00000567963 RNF185Q96GF1 192 aa10.22□□□□□ -0.77
CLN3-229ENST00000567963 H7C423 109 aa10.21□□□□□ -0.78
CLN3-229ENST00000567963 NDUFA5Q16718 116 aa10.21□□□□□ -0.78
CLN3-229ENST00000567963 AMMECR1LQ6DCA0 310 aa10.21□□□□□ -0.78
CLN3-229ENST00000567963 SPACA4Q8TDM5 124 aa10.21□□□□□ -0.78
CLN3-229ENST00000567963 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.2□□□□□ -0.78
CLN3-229ENST00000567963 IGKV2-29A2NJV5 120 aaPredicted RBP10.2□□□□□ -0.78
CLN3-229ENST00000567963 SDHAF1A6NFY7 115 aa10.2□□□□□ -0.78
CLN3-229ENST00000567963 GATCO43716 136 aaKnown RBP10.2□□□□□ -0.78
CLN3-229ENST00000567963 RNASEKQ6P5S7 137 aaKnown RBP10.2□□□□□ -0.78
CLN3-229ENST00000567963 FAM231DQ6ZW35 169 aa10.2□□□□□ -0.78
CLN3-229ENST00000567963 CHCHD10Q8WYQ3 142 aaPredicted RBP10.2□□□□□ -0.78
CLN3-229ENST00000567963 A8MWL6 223 aa10.19□□□□□ -0.78
CLN3-229ENST00000567963 APCSP02743 223 aa10.19□□□□□ -0.78
CLN3-229ENST00000567963 FGF6P10767 208 aa10.19□□□□□ -0.78
CLN3-229ENST00000567963 RPS10P46783 165 aaKnown RBP10.19□□□□□ -0.78
CLN3-229ENST00000567963 Q6ZRU5 148 aa10.19□□□□□ -0.78
CLN3-229ENST00000567963 COX6A2Q02221 97 aa10.18□□□□□ -0.78
CLN3-229ENST00000567963 HIGD2BQ4VC39 106 aa10.18□□□□□ -0.78
CLN3-229ENST00000567963 PLAC8Q9NZF1 115 aa10.18□□□□□ -0.78
CLN3-229ENST00000567963 PLA2G2DQ9UNK4 145 aa10.18□□□□□ -0.78
CLN3-229ENST00000567963 FAM231BA6NCW3 169 aa10.17□□□□□ -0.78
CLN3-229ENST00000567963 I3L3M4 83 aa10.17□□□□□ -0.78
CLN3-229ENST00000567963 TRBV6-5A0A0K0K1A5 114 aa10.17□□□□□ -0.78
CLN3-229ENST00000567963 ZNF25P17030 456 aaPredicted RBP10.17□□□□□ -0.78
CLN3-229ENST00000567963 PMCHP20382 165 aa10.17□□□□□ -0.78
CLN3-229ENST00000567963 FAM74A3Q4VXF1 159 aa10.17□□□□□ -0.78
CLN3-229ENST00000567963 CT83Q5H943 113 aa10.17□□□□□ -0.78
CLN3-229ENST00000567963 GVQW2A0A096LPI5 108 aaPredicted RBP10.16□□□□□ -0.78
CLN3-229ENST00000567963 TMEM218A2RU14 115 aa10.16□□□□□ -0.78
CLN3-229ENST00000567963 MT1HL1P0DM35 61 aa10.16□□□□□ -0.78
CLN3-229ENST00000567963 FOXI1Q12951 378 aa10.16□□□□□ -0.78
CLN3-229ENST00000567963 OR5A1Q8NGJ0 315 aa10.16□□□□□ -0.78
CLN3-229ENST00000567963 PRSS3P2Q8NHM4 247 aa10.16□□□□□ -0.78
CLN3-229ENST00000567963 SMIM7Q9BQ49 75 aa10.16□□□□□ -0.78
CLN3-229ENST00000567963 GAS8-AS1O95177 125 aa10.15□□□□□ -0.78
CLN3-229ENST00000567963 ADCYAP1P18509 176 aa10.15□□□□□ -0.78
CLN3-229ENST00000567963 CEBPGP53567 150 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 157.5 ms