RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 MRPL23Q16540 153 aaKnown RBP9.73□□□□□ -0.85
CLN3-210ENST00000563874 TMEM263Q8WUH6 116 aaKnown RBP9.73□□□□□ -0.85
CLN3-210ENST00000563874 Q9UF83 564 aa9.73□□□□□ -0.85
CLN3-210ENST00000563874 KNCNA6PVL3 124 aa9.72□□□□□ -0.85
CLN3-210ENST00000563874 PRSS2P07478 247 aa9.72□□□□□ -0.85
CLN3-210ENST00000563874 F8WDY8 70 aa9.71□□□□□ -0.85
CLN3-210ENST00000563874 K7EQG2 157 aa9.71□□□□□ -0.85
CLN3-210ENST00000563874 NPC2P61916 151 aa9.71□□□□□ -0.85
CLN3-210ENST00000563874 SBSPONQ8IVN8 264 aa9.71□□□□□ -0.85
CLN3-210ENST00000563874 PKD1L2Q7Z442 2459 aa9.71□□□□□ -0.85
CLN3-210ENST00000563874 MYO9AB2RTY4 2548 aa9.71□□□□□ -0.85
CLN3-210ENST00000563874 A8MZ25 164 aa9.71□□□□□ -0.85
CLN3-210ENST00000563874 RBMY1A1P0DJD3 496 aaKnown RBP9.71□□□□□ -0.85
CLN3-210ENST00000563874 RBMY1CP0DJD4 496 aa9.71□□□□□ -0.85
CLN3-210ENST00000563874 CD28P10747 220 aa9.71□□□□□ -0.85
CLN3-210ENST00000563874 RBMY1FQ15415 496 aaKnown RBP9.71□□□□□ -0.85
CLN3-210ENST00000563874 CHD6Q8TD26 2715 aa9.71□□□□□ -0.86
CLN3-210ENST00000563874 A0A0J9YXY3 114 aa9.71□□□□□ -0.86
CLN3-210ENST00000563874 IGHV3-30-3P0DP02 117 aa9.71□□□□□ -0.86
CLN3-210ENST00000563874 NRGNQ92686 78 aa9.71□□□□□ -0.86
CLN3-210ENST00000563874 MYO18BQ8IUG5 2567 aa9.7□□□□□ -0.86
CLN3-210ENST00000563874 PRRC2AP48634 2157 aaKnown RBP9.7□□□□□ -0.86
CLN3-210ENST00000563874 DEFB112Q30KQ8 113 aa9.7□□□□□ -0.86
CLN3-210ENST00000563874 FAM208BQ5VWN6 2430 aa9.7□□□□□ -0.86
CLN3-210ENST00000563874 MXRA5Q9NR99 2828 aa9.69□□□□□ -0.86
CLN3-210ENST00000563874 NOTCH3Q9UM47 2321 aa9.69□□□□□ -0.86
CLN3-210ENST00000563874 TIMM21Q9BVV7 248 aa9.69□□□□□ -0.86
CLN3-210ENST00000563874 SMIM9A6NGZ8 99 aa9.69□□□□□ -0.86
CLN3-210ENST00000563874 Q6ZSV7 163 aa9.69□□□□□ -0.86
CLN3-210ENST00000563874 MAPK1IP1LQ8NDC0 245 aa9.69□□□□□ -0.86
CLN3-210ENST00000563874 FAM104AQ969W3 186 aa9.69□□□□□ -0.86
CLN3-210ENST00000563874 ODF3Q96PU9 254 aa9.69□□□□□ -0.86
CLN3-210ENST00000563874 M0R2P5 195 aa9.68□□□□□ -0.86
CLN3-210ENST00000563874 A0A0B4J2C4 111 aa9.68□□□□□ -0.86
CLN3-210ENST00000563874 ADAMTSL4-AS1Q5T5F5 129 aa9.68□□□□□ -0.86
CLN3-210ENST00000563874 NTN5Q8WTR8 489 aaPredicted RBP9.68□□□□□ -0.86
CLN3-210ENST00000563874 NACAE9PAV3 2078 aa9.67□□□□□ -0.86
CLN3-210ENST00000563874 DOPEY1Q5JWR5 2465 aa9.67□□□□□ -0.86
CLN3-210ENST00000563874 C2CD3Q4AC94 2353 aa9.67□□□□□ -0.86
CLN3-210ENST00000563874 TRIAP1O43715 76 aa9.67□□□□□ -0.86
CLN3-210ENST00000563874 Q6ZSN1 163 aa9.67□□□□□ -0.86
CLN3-210ENST00000563874 TRGV11A0A075B6L2 103 aa9.66□□□□□ -0.86
CLN3-210ENST00000563874 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.66□□□□□ -0.86
CLN3-210ENST00000563874 IGHV3-38A0A0C4DH36 116 aa9.66□□□□□ -0.86
CLN3-210ENST00000563874 IGKV2-29A2NJV5 120 aaPredicted RBP9.66□□□□□ -0.86
CLN3-210ENST00000563874 HOXD3P31249 432 aaPredicted RBP9.66□□□□□ -0.86
CLN3-210ENST00000563874 DEFB136Q30KP8 78 aa9.66□□□□□ -0.86
CLN3-210ENST00000563874 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.66□□□□□ -0.86
CLN3-210ENST00000563874 TEX49A0A1B0GTD5 131 aa9.66□□□□□ -0.86
CLN3-210ENST00000563874 LITAFQ99732 161 aa9.66□□□□□ -0.86
CLN3-210ENST00000563874 B4DSR2 109 aa9.65□□□□□ -0.86
CLN3-210ENST00000563874 DEFB131AP59861 70 aa9.65□□□□□ -0.86
CLN3-210ENST00000563874 LINC01620Q4KN68 170 aa9.65□□□□□ -0.86
CLN3-210ENST00000563874 NDUFA12Q9UI09 145 aa9.65□□□□□ -0.86
CLN3-210ENST00000563874 DAND5Q8N907 189 aa9.65□□□□□ -0.86
CLN3-210ENST00000563874 MRPS36P82909 103 aaKnown RBP9.64□□□□□ -0.87
CLN3-210ENST00000563874 ATXN8Q156A1 80 aa9.64□□□□□ -0.87
CLN3-210ENST00000563874 HIST2H2BDQ6DRA6 164 aa9.64□□□□□ -0.87
CLN3-210ENST00000563874 C18orf65Q6ZTR6 163 aa9.64□□□□□ -0.87
CLN3-210ENST00000563874 DUX3Q96PT4 197 aa9.64□□□□□ -0.87
CLN3-210ENST00000563874 ANKRD17O75179 2603 aaKnown RBP9.64□□□□□ -0.87
CLN3-210ENST00000563874 TLN2Q9Y4G6 2542 aa9.63□□□□□ -0.87
CLN3-210ENST00000563874 GAGE12JA6NER3 117 aa9.63□□□□□ -0.87
CLN3-210ENST00000563874 F5H768 121 aa9.63□□□□□ -0.87
CLN3-210ENST00000563874 GAGE7O76087 117 aa9.63□□□□□ -0.87
CLN3-210ENST00000563874 GAGE12FP0CL80 117 aa9.63□□□□□ -0.87
CLN3-210ENST00000563874 GAGE12GP0CL81 117 aa9.63□□□□□ -0.87
CLN3-210ENST00000563874 GAGE12IP0CL82 117 aa9.63□□□□□ -0.87
CLN3-210ENST00000563874 GAGE4Q13068 117 aa9.63□□□□□ -0.87
CLN3-210ENST00000563874 IGHV1-58A0A0C4DH39 117 aa9.63□□□□□ -0.87
CLN3-210ENST00000563874 TMEM262E9PQX1 116 aa9.63□□□□□ -0.87
CLN3-210ENST00000563874 CCDC179H3BU77 68 aa9.63□□□□□ -0.87
CLN3-210ENST00000563874 CRLF1O75462 422 aa9.62□□□□□ -0.87
CLN3-210ENST00000563874 SLURP1P55000 103 aa9.62□□□□□ -0.87
CLN3-210ENST00000563874 PYGO1Q9Y3Y4 419 aa9.62□□□□□ -0.87
CLN3-210ENST00000563874 RBMY1BA6NDE4 496 aaKnown RBP9.62□□□□□ -0.87
CLN3-210ENST00000563874 RBMY1EA6NEQ0 496 aaKnown RBP9.62□□□□□ -0.87
CLN3-210ENST00000563874 RBMY1DP0C7P1 496 aaKnown RBP9.62□□□□□ -0.87
CLN3-210ENST00000563874 ZFAND6Q6FIF0 208 aa9.62□□□□□ -0.87
CLN3-210ENST00000563874 CLEC2BQ92478 149 aa9.62□□□□□ -0.87
CLN3-210ENST00000563874 BAHCC1Q9P281 2608 aa9.62□□□□□ -0.87
CLN3-210ENST00000563874 TEX29Q8N6K0 151 aa9.62□□□□□ -0.87
CLN3-210ENST00000563874 VSIG2Q96IQ7 327 aa9.62□□□□□ -0.87
CLN3-210ENST00000563874 LINC00467Q9BRT7 94 aa9.62□□□□□ -0.87
CLN3-210ENST00000563874 TRAV4A0A0B4J268 109 aa9.61□□□□□ -0.87
CLN3-210ENST00000563874 CHCHD7Q9BUK0 85 aa9.61□□□□□ -0.87
CLN3-210ENST00000563874 ICOSQ9Y6W8 199 aa9.61□□□□□ -0.87
CLN3-210ENST00000563874 UBE2D4Q9Y2X8 147 aa9.61□□□□□ -0.87
CLN3-210ENST00000563874 TRBV30A0A0K0K1B3 111 aa9.6□□□□□ -0.87
CLN3-210ENST00000563874 PTPN13Q12923 2485 aa9.6□□□□□ -0.87
CLN3-210ENST00000563874 A0A0U1RRA0 63 aa9.6□□□□□ -0.87
CLN3-210ENST00000563874 WNK1Q9H4A3 2382 aa9.6□□□□□ -0.87
CLN3-210ENST00000563874 ABCA12Q86UK0 2595 aa9.6□□□□□ -0.87
CLN3-210ENST00000563874 MIAQ16674 131 aa9.59□□□□□ -0.87
CLN3-210ENST00000563874 C2orf82Q6UX34 121 aa9.59□□□□□ -0.87
CLN3-210ENST00000563874 SETD2Q9BYW2 2564 aaPredicted RBP9.59□□□□□ -0.87
CLN3-210ENST00000563874 LRRK2Q5S007 2527 aa9.59□□□□□ -0.87
CLN3-210ENST00000563874 TRBV10-2A0A0K0K1G8 114 aa9.59□□□□□ -0.87
CLN3-210ENST00000563874 H3BMM0 161 aa9.59□□□□□ -0.87
CLN3-210ENST00000563874 CDKN2A-AS1Q9UH64 79 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms