RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 ZNF256Q9Y2P7 627 aaPredicted RBP9.92□□□□□ -0.82
CLK3-206ENST00000562078 IGIPA6NJ69 53 aa9.92□□□□□ -0.82
CLK3-206ENST00000562078 IGHV4-38-2P0DP08 117 aa9.92□□□□□ -0.82
CLK3-206ENST00000562078 C2orf48Q96LS8 159 aa9.92□□□□□ -0.82
CLK3-206ENST00000562078 OXTP01178 125 aa9.91□□□□□ -0.82
CLK3-206ENST00000562078 ZANQ9Y493 2812 aa9.91□□□□□ -0.82
CLK3-206ENST00000562078 OVOL1O14753 267 aa9.91□□□□□ -0.82
CLK3-206ENST00000562078 HRCT1Q6UXD1 115 aa9.91□□□□□ -0.82
CLK3-206ENST00000562078 ZNF580Q9UK33 172 aa9.91□□□□□ -0.82
CLK3-206ENST00000562078 MOB4Q9Y3A3 225 aa9.91□□□□□ -0.82
CLK3-206ENST00000562078 CR1P17927 2039 aa9.9□□□□□ -0.82
CLK3-206ENST00000562078 TRAV8-3A0A0A6YYJ7 113 aa9.9□□□□□ -0.82
CLK3-206ENST00000562078 LINC01356Q8N9X3 169 aa9.9□□□□□ -0.82
CLK3-206ENST00000562078 Q96MF0 132 aa9.9□□□□□ -0.82
CLK3-206ENST00000562078 CRYGAP11844 174 aa9.9□□□□□ -0.83
CLK3-206ENST00000562078 A0A096LNT2 108 aa9.89□□□□□ -0.83
CLK3-206ENST00000562078 ADARB2-AS1A8MUL3 147 aa9.89□□□□□ -0.83
CLK3-206ENST00000562078 MRAPQ8TCY5 172 aa9.89□□□□□ -0.83
CLK3-206ENST00000562078 CCDC140Q96MF4 163 aa9.89□□□□□ -0.83
CLK3-206ENST00000562078 DPH3Q96FX2 82 aa9.89□□□□□ -0.83
CLK3-206ENST00000562078 IGHV3-66A0A0C4DH42 116 aa9.88□□□□□ -0.83
CLK3-206ENST00000562078 LST1O00453 97 aa9.88□□□□□ -0.83
CLK3-206ENST00000562078 PRSS2P07478 247 aa9.88□□□□□ -0.83
CLK3-206ENST00000562078 ZNF876PQ49A33 203 aa9.88□□□□□ -0.83
CLK3-206ENST00000562078 CLEC19AQ6UXS0 136 aa9.88□□□□□ -0.83
CLK3-206ENST00000562078 LINC00643Q86TS7 51 aa9.88□□□□□ -0.83
CLK3-206ENST00000562078 DSCR8Q96T75 97 aa9.88□□□□□ -0.83
CLK3-206ENST00000562078 DPH3P1Q9H4G8 78 aa9.88□□□□□ -0.83
CLK3-206ENST00000562078 LY6EQ16553 131 aa9.88□□□□□ -0.83
CLK3-206ENST00000562078 GPHB5Q86YW7 130 aa9.88□□□□□ -0.83
CLK3-206ENST00000562078 OPRPNQ99935 248 aaPredicted RBP9.88□□□□□ -0.83
CLK3-206ENST00000562078 LEPROTO15243 131 aa9.87□□□□□ -0.83
CLK3-206ENST00000562078 COX6CP09669 75 aa9.87□□□□□ -0.83
CLK3-206ENST00000562078 NPC2P61916 151 aa9.87□□□□□ -0.83
CLK3-206ENST00000562078 PRR9Q5T870 116 aa9.87□□□□□ -0.83
CLK3-206ENST00000562078 ZFAND3Q9H8U3 227 aa9.87□□□□□ -0.83
CLK3-206ENST00000562078 UNC79Q9P2D8 2635 aa9.87□□□□□ -0.83
CLK3-206ENST00000562078 ITPR2Q14571 2701 aa9.87□□□□□ -0.83
CLK3-206ENST00000562078 KLK9Q2XQG4 91 aa9.87□□□□□ -0.83
CLK3-206ENST00000562078 KLK9Q9UKQ9 250 aa9.87□□□□□ -0.83
CLK3-206ENST00000562078 FASNP49327 2511 aaKnown RBP9.86□□□□□ -0.83
CLK3-206ENST00000562078 IGHV3OR16-13A0A075B7E8 117 aa9.86□□□□□ -0.83
CLK3-206ENST00000562078 IGHV3-74A0A0B4J1X5 117 aa9.86□□□□□ -0.83
CLK3-206ENST00000562078 A0A0J9YXY3 114 aa9.86□□□□□ -0.83
CLK3-206ENST00000562078 H3BUX3 64 aa9.86□□□□□ -0.83
CLK3-206ENST00000562078 I3L3M4 83 aa9.86□□□□□ -0.83
CLK3-206ENST00000562078 TRACP01848 142 aa9.86□□□□□ -0.83
CLK3-206ENST00000562078 ATP5G1P05496 136 aa9.86□□□□□ -0.83
CLK3-206ENST00000562078 IGF1P05019 195 aa9.85□□□□□ -0.83
CLK3-206ENST00000562078 ACYP1P07311 99 aa9.85□□□□□ -0.83
CLK3-206ENST00000562078 NSUN5P1Q3KNT7 163 aa9.85□□□□□ -0.83
CLK3-206ENST00000562078 Q5XG85 94 aa9.85□□□□□ -0.83
CLK3-206ENST00000562078 KRTAP1-3Q8IUG1 177 aa9.85□□□□□ -0.83
CLK3-206ENST00000562078 HECTD1Q9ULT8 2610 aa9.85□□□□□ -0.83
CLK3-206ENST00000562078 RHOHQ15669 191 aa9.85□□□□□ -0.83
CLK3-206ENST00000562078 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.85□□□□□ -0.83
CLK3-206ENST00000562078 C5orf38Q86SI9 138 aa9.85□□□□□ -0.83
CLK3-206ENST00000562078 PDZD2O15018 2839 aa9.85□□□□□ -0.83
CLK3-206ENST00000562078 AVPP01185 164 aa9.84□□□□□ -0.83
CLK3-206ENST00000562078 IGHV4-31P0DP07 118 aa9.84□□□□□ -0.83
CLK3-206ENST00000562078 C19orf54Q5BKX5 351 aa9.84□□□□□ -0.83
CLK3-206ENST00000562078 CREBBPQ92793 2442 aa9.84□□□□□ -0.83
CLK3-206ENST00000562078 ITPR3Q14573 2671 aa9.84□□□□□ -0.83
CLK3-206ENST00000562078 ADAMTSL4-AS1Q5T5F5 129 aa9.84□□□□□ -0.83
CLK3-206ENST00000562078 WFDC11Q8NEX6 87 aa9.84□□□□□ -0.83
CLK3-206ENST00000562078 DCANP1Q8TF63 244 aa9.84□□□□□ -0.83
CLK3-206ENST00000562078 TMEM141Q96I45 108 aa9.84□□□□□ -0.83
CLK3-206ENST00000562078 LITAFQ99732 161 aa9.84□□□□□ -0.83
CLK3-206ENST00000562078 CCDC168Q8NDH2 2452 aa9.84□□□□□ -0.83
CLK3-206ENST00000562078 PRRC2AP48634 2157 aaKnown RBP9.84□□□□□ -0.83
CLK3-206ENST00000562078 IGHV3-49A0A0A0MS15 119 aa9.83□□□□□ -0.84
CLK3-206ENST00000562078 TRBV7-1A0A0A6YYK4 115 aa9.83□□□□□ -0.84
CLK3-206ENST00000562078 S100A4P26447 101 aaKnown RBP9.83□□□□□ -0.84
CLK3-206ENST00000562078 PHLDA3Q9Y5J5 127 aa9.83□□□□□ -0.84
CLK3-206ENST00000562078 CLPSL1A2RUU4 121 aa9.83□□□□□ -0.84
CLK3-206ENST00000562078 J3QLI3 93 aa9.83□□□□□ -0.84
CLK3-206ENST00000562078 RNF152Q8N8N0 203 aa9.83□□□□□ -0.84
CLK3-206ENST00000562078 FAM19A4Q96LR4 140 aa9.83□□□□□ -0.84
CLK3-206ENST00000562078 TIMM17AQ99595 171 aa9.83□□□□□ -0.84
CLK3-206ENST00000562078 SPANXDQ9BXN6 97 aa9.83□□□□□ -0.84
CLK3-206ENST00000562078 BUB3O43684 328 aa9.82□□□□□ -0.84
CLK3-206ENST00000562078 TRAV12-3A0A0B4J271 114 aa9.82□□□□□ -0.84
CLK3-206ENST00000562078 A6NDX4 124 aa9.82□□□□□ -0.84
CLK3-206ENST00000562078 TEX15Q9BXT5 2789 aa9.82□□□□□ -0.84
CLK3-206ENST00000562078 FAM223BA6NKX1 122 aa9.81□□□□□ -0.84
CLK3-206ENST00000562078 RS1O15537 224 aa9.81□□□□□ -0.84
CLK3-206ENST00000562078 FAM223AQ8IWN6 122 aa9.81□□□□□ -0.84
CLK3-206ENST00000562078 SDHAF1A6NFY7 115 aa9.81□□□□□ -0.84
CLK3-206ENST00000562078 CXCL5P42830 114 aa9.81□□□□□ -0.84
CLK3-206ENST00000562078 TMEM258P61165 79 aa9.81□□□□□ -0.84
CLK3-206ENST00000562078 TIMM21Q9BVV7 248 aa9.81□□□□□ -0.84
CLK3-206ENST00000562078 SPANXCQ9NY87 97 aa9.81□□□□□ -0.84
CLK3-206ENST00000562078 ATOX1O00244 68 aa9.8□□□□□ -0.84
CLK3-206ENST00000562078 HIST1H4AP62805 103 aaKnown RBP9.8□□□□□ -0.84
CLK3-206ENST00000562078 BLCAPP62952 87 aa9.8□□□□□ -0.84
CLK3-206ENST00000562078 SDIM1Q6ZPB5 146 aa9.8□□□□□ -0.84
CLK3-206ENST00000562078 FLNAP21333 2647 aaKnown RBP9.8□□□□□ -0.84
CLK3-206ENST00000562078 TRAV13-1A0A0B4J241 112 aa9.8□□□□□ -0.84
CLK3-206ENST00000562078 IGHG2P01859 326 aa9.8□□□□□ -0.84
CLK3-206ENST00000562078 ZNF469Q96JG9 3925 aaPredicted RBP9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 109.5 ms