RNA–Protein interactions for RNA: ENST00000551320.1

PRPF40B-214, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 455 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-214ENST00000551320 RAB4BP61018 213 aa4.31□□□□□ -1.72
PRPF40B-214ENST00000551320 CCL20P78556 96 aa4.31□□□□□ -1.72
PRPF40B-214ENST00000551320 REG3AQ06141 175 aa4.31□□□□□ -1.72
PRPF40B-214ENST00000551320 PIK3CD-AS1Q5SR53 167 aa4.31□□□□□ -1.72
PRPF40B-214ENST00000551320 SPANXN1Q5VSR9 72 aa4.31□□□□□ -1.72
PRPF40B-214ENST00000551320 PRSS3P2Q8NHM4 247 aa4.31□□□□□ -1.72
PRPF40B-214ENST00000551320 STOML3Q8TAV4 291 aa4.31□□□□□ -1.72
PRPF40B-214ENST00000551320 FAM213BQ8TBF2 198 aa4.31□□□□□ -1.72
PRPF40B-214ENST00000551320 SFT2D1Q8WV19 159 aa4.31□□□□□ -1.72
PRPF40B-214ENST00000551320 GTSF1Q8WW33 167 aa4.31□□□□□ -1.72
PRPF40B-214ENST00000551320 HIST1H2BAQ96A08 127 aa4.31□□□□□ -1.72
PRPF40B-214ENST00000551320 FMC1Q96HJ9 113 aa4.31□□□□□ -1.72
PRPF40B-214ENST00000551320 PRR34Q9NV39 138 aa4.31□□□□□ -1.72
PRPF40B-214ENST00000551320 ZFP30Q9Y2G7 519 aa4.31□□□□□ -1.72
PRPF40B-214ENST00000551320 BORCS7-ASMTA0A0B4J1R7 106 aa4.3□□□□□ -1.72
PRPF40B-214ENST00000551320 TRAV26-2A0A0B4J265 109 aa4.3□□□□□ -1.72
PRPF40B-214ENST00000551320 RAB19A4D1S5 217 aa4.3□□□□□ -1.72
PRPF40B-214ENST00000551320 COX6A2Q02221 97 aa4.3□□□□□ -1.72
PRPF40B-214ENST00000551320 MIAQ16674 131 aa4.3□□□□□ -1.72
PRPF40B-214ENST00000551320 C14orf177Q52M58 125 aa4.3□□□□□ -1.72
PRPF40B-214ENST00000551320 COX8CQ7Z4L0 72 aa4.3□□□□□ -1.72
PRPF40B-214ENST00000551320 BAGE2Q86Y30 109 aa4.3□□□□□ -1.72
PRPF40B-214ENST00000551320 C15orf56Q8N910 161 aa4.3□□□□□ -1.72
PRPF40B-214ENST00000551320 KRTAP4-11Q9BYQ6 195 aa4.3□□□□□ -1.72
PRPF40B-214ENST00000551320 M0QY20 66 aa4.29□□□□□ -1.72
PRPF40B-214ENST00000551320 SNAI2O43623 268 aa4.29□□□□□ -1.72
PRPF40B-214ENST00000551320 SEC11BP0C7V7 166 aa4.29□□□□□ -1.72
PRPF40B-214ENST00000551320 FOXA3P55318 350 aaPredicted RBP4.29□□□□□ -1.72
PRPF40B-214ENST00000551320 MAJINQ3KP22 176 aa4.29□□□□□ -1.72
PRPF40B-214ENST00000551320 LINC00299Q6ZSB3 139 aa4.29□□□□□ -1.72
PRPF40B-214ENST00000551320 SPACA4Q8TDM5 124 aa4.29□□□□□ -1.72
PRPF40B-214ENST00000551320 CHCHD7Q9BUK0 85 aa4.29□□□□□ -1.72
PRPF40B-214ENST00000551320 TRBV25-1A0A075B6N4 114 aa4.28□□□□□ -1.72
PRPF40B-214ENST00000551320 IGHV3-64A0A075B6Q5 118 aa4.28□□□□□ -1.72
PRPF40B-214ENST00000551320 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.28□□□□□ -1.72
PRPF40B-214ENST00000551320 IGHV1-24A0A0C4DH33 117 aa4.28□□□□□ -1.72
PRPF40B-214ENST00000551320 A0A0D9SG52 128 aa4.28□□□□□ -1.72
PRPF40B-214ENST00000551320 IGKV2-29A2NJV5 120 aaPredicted RBP4.28□□□□□ -1.72
PRPF40B-214ENST00000551320 GIPP09681 153 aaPredicted RBP4.28□□□□□ -1.72
PRPF40B-214ENST00000551320 RPL35P42766 123 aaKnown RBP4.28□□□□□ -1.72
PRPF40B-214ENST00000551320 TMUB2Q71RG4 321 aa4.28□□□□□ -1.72
PRPF40B-214ENST00000551320 VAX2Q9UIW0 290 aa4.28□□□□□ -1.72
PRPF40B-214ENST00000551320 A0A096LNI7 61 aa4.27□□□□□ -1.73
PRPF40B-214ENST00000551320 GAS8-AS1O95177 125 aa4.27□□□□□ -1.73
PRPF40B-214ENST00000551320 SMIM17P0DL12 118 aa4.27□□□□□ -1.73
PRPF40B-214ENST00000551320 SULT1A2P50226 295 aa4.27□□□□□ -1.73
PRPF40B-214ENST00000551320 CIRBPQ14011 172 aaKnown RBP4.27□□□□□ -1.73
PRPF40B-214ENST00000551320 IQCJQ1A5X6 159 aa4.27□□□□□ -1.73
PRPF40B-214ENST00000551320 LYZL1Q6UWQ5 148 aa4.27□□□□□ -1.73
PRPF40B-214ENST00000551320 Q6ZRU5 148 aa4.27□□□□□ -1.73
PRPF40B-214ENST00000551320 KCNRGQ8N5I3 272 aa4.27□□□□□ -1.73
PRPF40B-214ENST00000551320 STPG4Q8N801 248 aa4.27□□□□□ -1.73
PRPF40B-214ENST00000551320 OR2D3Q8NGH3 330 aa4.27□□□□□ -1.73
PRPF40B-214ENST00000551320 RPL39LQ96EH5 51 aaKnown RBP4.27□□□□□ -1.73
PRPF40B-214ENST00000551320 TMEM243Q9BU79 118 aa4.27□□□□□ -1.73
PRPF40B-214ENST00000551320 OR5AL1P0C617 328 aa4.26□□□□□ -1.73
PRPF40B-214ENST00000551320 IGLC6P0CF74 106 aa4.26□□□□□ -1.73
PRPF40B-214ENST00000551320 CNBPP62633 177 aaKnown RBP4.26□□□□□ -1.73
PRPF40B-214ENST00000551320 PRR3P79522 188 aaKnown RBP4.26□□□□□ -1.73
PRPF40B-214ENST00000551320 CENPWQ5EE01 88 aa4.26□□□□□ -1.73
PRPF40B-214ENST00000551320 FER1L6-AS1Q8NA97 138 aa4.26□□□□□ -1.73
PRPF40B-214ENST00000551320 AP1S3Q96PC3 154 aa4.26□□□□□ -1.73
PRPF40B-214ENST00000551320 DPH3P1Q9H4G8 78 aa4.26□□□□□ -1.73
PRPF40B-214ENST00000551320 PLAC8Q9NZF1 115 aa4.26□□□□□ -1.73
PRPF40B-214ENST00000551320 GNG13Q9P2W3 67 aa4.26□□□□□ -1.73
PRPF40B-214ENST00000551320 NTF3P20783 257 aa4.25□□□□□ -1.73
PRPF40B-214ENST00000551320 AMTP48728 403 aa4.25□□□□□ -1.73
PRPF40B-214ENST00000551320 RNASEKQ6P5S7 137 aaKnown RBP4.25□□□□□ -1.73
PRPF40B-214ENST00000551320 RASL11AQ6T310 242 aa4.25□□□□□ -1.73
PRPF40B-214ENST00000551320 GATD1Q8NB37 220 aa4.25□□□□□ -1.73
PRPF40B-214ENST00000551320 MBD3L1Q8WWY6 194 aa4.25□□□□□ -1.73
PRPF40B-214ENST00000551320 CHCHD10Q8WYQ3 142 aaPredicted RBP4.25□□□□□ -1.73
PRPF40B-214ENST00000551320 NKX6-2Q9C056 277 aaPredicted RBP4.25□□□□□ -1.73
PRPF40B-214ENST00000551320 CTDSP1Q9GZU7 261 aa4.25□□□□□ -1.73
PRPF40B-214ENST00000551320 TRBV20OR9-2A0A075B6H5 130 aa4.24□□□□□ -1.73
PRPF40B-214ENST00000551320 UBE2L6O14933 153 aa4.24□□□□□ -1.73
PRPF40B-214ENST00000551320 PFDN1O60925 122 aa4.24□□□□□ -1.73
PRPF40B-214ENST00000551320 RPS10P46783 165 aaKnown RBP4.24□□□□□ -1.73
PRPF40B-214ENST00000551320 XCL1P47992 114 aa4.24□□□□□ -1.73
PRPF40B-214ENST00000551320 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.24□□□□□ -1.73
PRPF40B-214ENST00000551320 LINC01600Q96MT4 127 aa4.24□□□□□ -1.73
PRPF40B-214ENST00000551320 RNASE7Q9H1E1 156 aaKnown RBP4.24□□□□□ -1.73
PRPF40B-214ENST00000551320 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.23□□□□□ -1.73
PRPF40B-214ENST00000551320 A0A0J9YXV3 536 aa4.23□□□□□ -1.73
PRPF40B-214ENST00000551320 C19orf71A6NCJ1 209 aa4.23□□□□□ -1.73
PRPF40B-214ENST00000551320 KRTAP10-8P60410 259 aa4.23□□□□□ -1.73
PRPF40B-214ENST00000551320 TWIST1Q15672 202 aa4.23□□□□□ -1.73
PRPF40B-214ENST00000551320 RNASE13Q5GAN3 156 aaKnown RBP4.23□□□□□ -1.73
PRPF40B-214ENST00000551320 C7orf33Q8WU49 177 aa4.23□□□□□ -1.73
PRPF40B-214ENST00000551320 KRTAP4-2Q9BYR5 136 aa4.23□□□□□ -1.73
PRPF40B-214ENST00000551320 NIT2Q9NQR4 276 aa4.23□□□□□ -1.73
PRPF40B-214ENST00000551320 BATF3Q9NR55 127 aa4.23□□□□□ -1.73
PRPF40B-214ENST00000551320 MUC2Q02817 5179 aa4.22□□□□□ -1.73
PRPF40B-214ENST00000551320 TRAV8-4A0A0B4J246 113 aa4.22□□□□□ -1.73
PRPF40B-214ENST00000551320 A0A1B0GUV1 79 aa4.22□□□□□ -1.73
PRPF40B-214ENST00000551320 A0A1W2PNN7 141 aa4.22□□□□□ -1.73
PRPF40B-214ENST00000551320 FAM231BA6NCW3 169 aa4.22□□□□□ -1.73
PRPF40B-214ENST00000551320 H7C1H1 209 aa4.22□□□□□ -1.73
PRPF40B-214ENST00000551320 K7EN84 100 aa4.22□□□□□ -1.73
PRPF40B-214ENST00000551320 CCL25O15444 150 aa4.22□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms