RNA–Protein interactions for RNA: ENST00000546974.1

COL2A1-209, Transcript of collagen type II alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL2A1, Length 703 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-209ENST00000546974 C9orf163Q8N9P6 203 aa9.3□□□□□ -0.92
COL2A1-209ENST00000546974 CLRN3Q8NCR9 226 aa9.3□□□□□ -0.92
COL2A1-209ENST00000546974 TMEM243Q9BU79 118 aa9.3□□□□□ -0.92
COL2A1-209ENST00000546974 CNFNQ9BYD5 112 aa9.3□□□□□ -0.92
COL2A1-209ENST00000546974 IGLV4-60A0A075B6I1 120 aa9.28□□□□□ -0.92
COL2A1-209ENST00000546974 TWIST1Q15672 202 aa9.28□□□□□ -0.92
COL2A1-209ENST00000546974 RPP21Q9H633 154 aaKnown RBP9.28□□□□□ -0.92
COL2A1-209ENST00000546974 IGLV10-54A0A075B6I4 117 aa9.27□□□□□ -0.93
COL2A1-209ENST00000546974 K7EN84 100 aa9.27□□□□□ -0.93
COL2A1-209ENST00000546974 UBE2L6O14933 153 aa9.27□□□□□ -0.93
COL2A1-209ENST00000546974 COTL1Q14019 142 aa9.27□□□□□ -0.93
COL2A1-209ENST00000546974 OCC1Q8TAD7 63 aa9.27□□□□□ -0.93
COL2A1-209ENST00000546974 RNASE7Q9H1E1 156 aaKnown RBP9.27□□□□□ -0.93
COL2A1-209ENST00000546974 GFRA4Q9GZZ7 299 aa9.26□□□□□ -0.93
COL2A1-209ENST00000546974 AMTP48728 403 aa9.25□□□□□ -0.93
COL2A1-209ENST00000546974 CNBPP62633 177 aaKnown RBP9.25□□□□□ -0.93
COL2A1-209ENST00000546974 SDIM1Q6ZPB5 146 aa9.25□□□□□ -0.93
COL2A1-209ENST00000546974 GATD1Q8NB37 220 aa9.25□□□□□ -0.93
COL2A1-209ENST00000546974 TMEM250H0YL14 139 aa9.24□□□□□ -0.93
COL2A1-209ENST00000546974 SMIM15Q7Z3B0 74 aa9.24□□□□□ -0.93
COL2A1-209ENST00000546974 GTSF1Q8WW33 167 aa9.24□□□□□ -0.93
COL2A1-209ENST00000546974 hDV102S1A0JD36 115 aa9.23□□□□□ -0.93
COL2A1-209ENST00000546974 OXTP01178 125 aa9.23□□□□□ -0.93
COL2A1-209ENST00000546974 RPL37AP61513 92 aaKnown RBP9.23□□□□□ -0.93
COL2A1-209ENST00000546974 BLOC1S1P78537 153 aa9.23□□□□□ -0.93
COL2A1-209ENST00000546974 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.23□□□□□ -0.93
COL2A1-209ENST00000546974 TRAV26-2A0A0B4J265 109 aa9.22□□□□□ -0.93
COL2A1-209ENST00000546974 GATCO43716 136 aaKnown RBP9.22□□□□□ -0.93
COL2A1-209ENST00000546974 NCR2O95944 276 aa9.22□□□□□ -0.93
COL2A1-209ENST00000546974 TEX261Q6UWH6 196 aa9.22□□□□□ -0.93
COL2A1-209ENST00000546974 FAM231DQ6ZW35 169 aa9.22□□□□□ -0.93
COL2A1-209ENST00000546974 LYPD6BQ8NI32 183 aa9.22□□□□□ -0.93
COL2A1-209ENST00000546974 AP5S1Q9NUS5 200 aa9.22□□□□□ -0.93
COL2A1-209ENST00000546974 HMCN2Q8NDA2 5059 aa9.22□□□□□ -0.93
COL2A1-209ENST00000546974 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.21□□□□□ -0.94
COL2A1-209ENST00000546974 A8MWL6 223 aa9.21□□□□□ -0.94
COL2A1-209ENST00000546974 PANO1I0J062 215 aa9.21□□□□□ -0.94
COL2A1-209ENST00000546974 ALKAL2Q6UX46 152 aa9.21□□□□□ -0.94
COL2A1-209ENST00000546974 RPL39LQ96EH5 51 aaKnown RBP9.21□□□□□ -0.94
COL2A1-209ENST00000546974 IGHV3-64A0A075B6Q5 118 aa9.2□□□□□ -0.94
COL2A1-209ENST00000546974 H7C423 109 aa9.2□□□□□ -0.94
COL2A1-209ENST00000546974 SLPIP03973 132 aa9.2□□□□□ -0.94
COL2A1-209ENST00000546974 FOXA3P55318 350 aaPredicted RBP9.2□□□□□ -0.94
COL2A1-209ENST00000546974 CIRBPQ14011 172 aaKnown RBP9.2□□□□□ -0.94
COL2A1-209ENST00000546974 CT83Q5H943 113 aa9.2□□□□□ -0.94
COL2A1-209ENST00000546974 APCSP02743 223 aa9.19□□□□□ -0.94
COL2A1-209ENST00000546974 AMMECR1LQ6DCA0 310 aa9.19□□□□□ -0.94
COL2A1-209ENST00000546974 CFAP161Q6P656 301 aa9.19□□□□□ -0.94
COL2A1-209ENST00000546974 GAGE12HA6NDE8 117 aa9.18□□□□□ -0.94
COL2A1-209ENST00000546974 SDHAF1A6NFY7 115 aa9.18□□□□□ -0.94
COL2A1-209ENST00000546974 NDUFS6O75380 124 aaKnown RBP9.18□□□□□ -0.94
COL2A1-209ENST00000546974 C15orf56Q8N910 161 aa9.18□□□□□ -0.94
COL2A1-209ENST00000546974 RNF185Q96GF1 192 aa9.18□□□□□ -0.94
COL2A1-209ENST00000546974 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.17□□□□□ -0.94
COL2A1-209ENST00000546974 IGKV3OR2-268A0A0C4DH90 116 aa9.17□□□□□ -0.94
COL2A1-209ENST00000546974 TRBV6-5A0A0K0K1A5 114 aa9.17□□□□□ -0.94
COL2A1-209ENST00000546974 IGKV2-29A2NJV5 120 aaPredicted RBP9.17□□□□□ -0.94
COL2A1-209ENST00000546974 I3L3M4 83 aa9.17□□□□□ -0.94
COL2A1-209ENST00000546974 CEBPGP53567 150 aa9.17□□□□□ -0.94
COL2A1-209ENST00000546974 SERTAD4-AS1Q5TG53 156 aa9.17□□□□□ -0.94
COL2A1-209ENST00000546974 RNASEKQ6P5S7 137 aaKnown RBP9.17□□□□□ -0.94
COL2A1-209ENST00000546974 FGF6P10767 208 aa9.16□□□□□ -0.94
COL2A1-209ENST00000546974 ZNF25P17030 456 aaPredicted RBP9.16□□□□□ -0.94
COL2A1-209ENST00000546974 PMCHP20382 165 aa9.16□□□□□ -0.94
COL2A1-209ENST00000546974 HNRNPA3P51991 378 aaKnown RBP9.16□□□□□ -0.94
COL2A1-209ENST00000546974 CHCHD10Q8WYQ3 142 aaPredicted RBP9.16□□□□□ -0.94
COL2A1-209ENST00000546974 BORCS7Q96B45 105 aa9.16□□□□□ -0.94
COL2A1-209ENST00000546974 FAM210AQ96ND0 272 aa9.16□□□□□ -0.94
COL2A1-209ENST00000546974 TNXBP22105 4242 aa9.15□□□□□ -0.94
COL2A1-209ENST00000546974 FAM231BA6NCW3 169 aa9.15□□□□□ -0.94
COL2A1-209ENST00000546974 SPACA4Q8TDM5 124 aa9.15□□□□□ -0.94
COL2A1-209ENST00000546974 TSKUQ8WUA8 353 aa9.15□□□□□ -0.94
COL2A1-209ENST00000546974 DPH3Q96FX2 82 aa9.15□□□□□ -0.94
COL2A1-209ENST00000546974 SMIM7Q9BQ49 75 aa9.15□□□□□ -0.94
COL2A1-209ENST00000546974 EIF5A2Q9GZV4 153 aaKnown RBP9.15□□□□□ -0.94
COL2A1-209ENST00000546974 TMEM191AQ9H0A3 160 aa9.15□□□□□ -0.94
COL2A1-209ENST00000546974 A0A087WYN8 130 aa9.14□□□□□ -0.95
COL2A1-209ENST00000546974 A0A1B0GUT8 65 aa9.14□□□□□ -0.95
COL2A1-209ENST00000546974 HIGD1CA8MV81 97 aa9.14□□□□□ -0.95
COL2A1-209ENST00000546974 CHTF8P0CG12 524 aa9.14□□□□□ -0.95
COL2A1-209ENST00000546974 ESDP10768 282 aa9.14□□□□□ -0.95
COL2A1-209ENST00000546974 RPS10P46783 165 aaKnown RBP9.14□□□□□ -0.95
COL2A1-209ENST00000546974 LINC01551Q86U37 167 aa9.14□□□□□ -0.95
COL2A1-209ENST00000546974 OR5A1Q8NGJ0 315 aa9.14□□□□□ -0.95
COL2A1-209ENST00000546974 ST20Q9HBF5 79 aa9.14□□□□□ -0.95
COL2A1-209ENST00000546974 OSTCQ9NRP0 149 aa9.14□□□□□ -0.95
COL2A1-209ENST00000546974 GAS8-AS1O95177 125 aa9.13□□□□□ -0.95
COL2A1-209ENST00000546974 IFITM2Q01629 132 aa9.13□□□□□ -0.95
COL2A1-209ENST00000546974 TMEM101Q96IK0 257 aa9.13□□□□□ -0.95
COL2A1-209ENST00000546974 BTF3L4Q96K17 158 aa9.13□□□□□ -0.95
COL2A1-209ENST00000546974 GVQW2A0A096LPI5 108 aaPredicted RBP9.12□□□□□ -0.95
COL2A1-209ENST00000546974 ZNF727A8MUV8 499 aa9.12□□□□□ -0.95
COL2A1-209ENST00000546974 TSHBP01222 138 aa9.12□□□□□ -0.95
COL2A1-209ENST00000546974 RAB4AP20338 218 aa9.12□□□□□ -0.95
COL2A1-209ENST00000546974 POLR2KP53803 58 aaKnown RBP9.12□□□□□ -0.95
COL2A1-209ENST00000546974 FOXI1Q12951 378 aa9.12□□□□□ -0.95
COL2A1-209ENST00000546974 HIGD2BQ4VC39 106 aa9.12□□□□□ -0.95
COL2A1-209ENST00000546974 PLAC8Q9NZF1 115 aa9.12□□□□□ -0.95
COL2A1-209ENST00000546974 SRP19P09132 144 aaKnown RBP9.11□□□□□ -0.95
COL2A1-209ENST00000546974 COX6A2Q02221 97 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 144.8 ms