RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 XIRP1Q702N8 1843 aaKnown RBP6.58□□□□□ -1.36
YBX3-208ENST00000540447 K7ENP7 123 aa6.58□□□□□ -1.36
YBX3-208ENST00000540447 GYPEP15421 78 aa6.58□□□□□ -1.36
YBX3-208ENST00000540447 SMCPP49901 116 aaPredicted RBP6.58□□□□□ -1.36
YBX3-208ENST00000540447 H3BUA1 57 aa6.58□□□□□ -1.36
YBX3-208ENST00000540447 NCKAP5O14513 1909 aa6.58□□□□□ -1.36
YBX3-208ENST00000540447 LIMD2Q9BT23 127 aa6.57□□□□□ -1.36
YBX3-208ENST00000540447 PRO0461Q9UI25 63 aa6.57□□□□□ -1.36
YBX3-208ENST00000540447 Q6ZQY7 126 aa6.57□□□□□ -1.36
YBX3-208ENST00000540447 A0A087WZ39 114 aa6.57□□□□□ -1.36
YBX3-208ENST00000540447 E7EQL1 145 aa6.57□□□□□ -1.36
YBX3-208ENST00000540447 DEFB1P60022 68 aa6.57□□□□□ -1.36
YBX3-208ENST00000540447 TET1Q8NFU7 2136 aa6.57□□□□□ -1.36
YBX3-208ENST00000540447 NTM-AS1Q6ZSK4 140 aa6.57□□□□□ -1.36
YBX3-208ENST00000540447 ZFAND2AQ8N6M9 145 aa6.56□□□□□ -1.36
YBX3-208ENST00000540447 BRWD1-AS2P59051 145 aa6.56□□□□□ -1.36
YBX3-208ENST00000540447 Q6ZPA2 131 aa6.56□□□□□ -1.36
YBX3-208ENST00000540447 LINC00846Q9NV44 126 aa6.56□□□□□ -1.36
YBX3-208ENST00000540447 SIP14410 1827 aa6.56□□□□□ -1.36
YBX3-208ENST00000540447 IGLV2-11P01706 119 aa6.56□□□□□ -1.36
YBX3-208ENST00000540447 APC2O95996 2303 aa6.56□□□□□ -1.36
YBX3-208ENST00000540447 DENND4CQ5VZ89 1909 aa6.56□□□□□ -1.36
YBX3-208ENST00000540447 APRG1Q8IVJ8 170 aa6.56□□□□□ -1.36
YBX3-208ENST00000540447 LINC00208Q96KT6 92 aa6.56□□□□□ -1.36
YBX3-208ENST00000540447 TRIOBPQ9H2D6 2365 aa6.55□□□□□ -1.36
YBX3-208ENST00000540447 GAS8-AS1O95177 125 aa6.55□□□□□ -1.36
YBX3-208ENST00000540447 IGLV1-44P01699 117 aa6.55□□□□□ -1.36
YBX3-208ENST00000540447 Q6ZSV7 163 aa6.55□□□□□ -1.36
YBX3-208ENST00000540447 KAAG1Q9UBP8 84 aa6.55□□□□□ -1.36
YBX3-208ENST00000540447 FAM19A4Q96LR4 140 aa6.55□□□□□ -1.36
YBX3-208ENST00000540447 SHANK3Q9BYB0 1731 aa6.55□□□□□ -1.36
YBX3-208ENST00000540447 IGHV7-81A0A0B4J1V7 117 aa6.55□□□□□ -1.36
YBX3-208ENST00000540447 C16orf74Q96GX8 76 aa6.55□□□□□ -1.36
YBX3-208ENST00000540447 PRSS33Q8NF86 280 aa6.55□□□□□ -1.36
YBX3-208ENST00000540447 IL17DQ8TAD2 202 aa6.54□□□□□ -1.36
YBX3-208ENST00000540447 PLXNA4Q9HCM2 1894 aa6.54□□□□□ -1.36
YBX3-208ENST00000540447 HELZP42694 1942 aaKnown RBP6.54□□□□□ -1.36
YBX3-208ENST00000540447 LHBP01229 141 aa6.54□□□□□ -1.36
YBX3-208ENST00000540447 HOXB4P17483 251 aaPredicted RBP6.54□□□□□ -1.36
YBX3-208ENST00000540447 B4DSR2 109 aa6.54□□□□□ -1.36
YBX3-208ENST00000540447 EIF4EBP1Q13541 118 aaPredicted RBP6.54□□□□□ -1.36
YBX3-208ENST00000540447 M0QY20 66 aa6.53□□□□□ -1.36
YBX3-208ENST00000540447 LINC00269Q8N2A0 174 aa6.53□□□□□ -1.36
YBX3-208ENST00000540447 DNAJC9-AS1A6NH13 148 aa6.53□□□□□ -1.36
YBX3-208ENST00000540447 BPESC1Q9GZL8 116 aa6.53□□□□□ -1.36
YBX3-208ENST00000540447 PCNX2A6NKB5 2137 aa6.53□□□□□ -1.36
YBX3-208ENST00000540447 RPL28P46779 137 aaKnown RBP6.53□□□□□ -1.36
YBX3-208ENST00000540447 LINC00336Q6ZUF6 198 aa6.53□□□□□ -1.36
YBX3-208ENST00000540447 LINC01561Q8N1V8 128 aa6.53□□□□□ -1.36
YBX3-208ENST00000540447 CTSZQ9UBR2 303 aa6.53□□□□□ -1.36
YBX3-208ENST00000540447 HCFC1P51610 2035 aa6.53□□□□□ -1.36
YBX3-208ENST00000540447 TICRRQ7Z2Z1 1910 aa6.52□□□□□ -1.37
YBX3-208ENST00000540447 A0A087WYN8 130 aa6.52□□□□□ -1.37
YBX3-208ENST00000540447 TSPEAR-AS2P59090 65 aa6.52□□□□□ -1.37
YBX3-208ENST00000540447 TRBV10-3A0A0K0K1G6 114 aa6.52□□□□□ -1.37
YBX3-208ENST00000540447 WIPF1O43516 503 aa6.52□□□□□ -1.37
YBX3-208ENST00000540447 IGHV4-38-2P0DP08 117 aa6.52□□□□□ -1.37
YBX3-208ENST00000540447 A0A096LNJ9 63 aa6.52□□□□□ -1.37
YBX3-208ENST00000540447 ESM1Q9NQ30 184 aa6.52□□□□□ -1.37
YBX3-208ENST00000540447 DCANP1Q8TF63 244 aa6.52□□□□□ -1.37
YBX3-208ENST00000540447 NOTCH3Q9UM47 2321 aa6.52□□□□□ -1.37
YBX3-208ENST00000540447 THADAQ6YHU6 1953 aa6.52□□□□□ -1.37
YBX3-208ENST00000540447 TSHBP01222 138 aa6.51□□□□□ -1.37
YBX3-208ENST00000540447 SPRNQ5BIV9 151 aa6.51□□□□□ -1.37
YBX3-208ENST00000540447 IGLV4-69A0A075B6H9 119 aa6.51□□□□□ -1.37
YBX3-208ENST00000540447 CRYGDP07320 174 aa6.51□□□□□ -1.37
YBX3-208ENST00000540447 ROS1P08922 2347 aa6.51□□□□□ -1.37
YBX3-208ENST00000540447 SCN10AQ9Y5Y9 1956 aa6.51□□□□□ -1.37
YBX3-208ENST00000540447 PKDREJQ9NTG1 2253 aa6.51□□□□□ -1.37
YBX3-208ENST00000540447 IGIPA6NJ69 53 aa6.51□□□□□ -1.37
YBX3-208ENST00000540447 BCE1O60756 84 aa6.51□□□□□ -1.37
YBX3-208ENST00000540447 Q8N814 137 aa6.5□□□□□ -1.37
YBX3-208ENST00000540447 ARHGAP32A7KAX9 2087 aa6.5□□□□□ -1.37
YBX3-208ENST00000540447 DSCR9P59020 149 aa6.5□□□□□ -1.37
YBX3-208ENST00000540447 CRIP3Q6Q6R5 217 aa6.5□□□□□ -1.37
YBX3-208ENST00000540447 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP6.5□□□□□ -1.37
YBX3-208ENST00000540447 POLR2KP53803 58 aaKnown RBP6.5□□□□□ -1.37
YBX3-208ENST00000540447 LINC01547P58512 204 aaPredicted RBP6.5□□□□□ -1.37
YBX3-208ENST00000540447 B9D2Q9BPU9 175 aa6.5□□□□□ -1.37
YBX3-208ENST00000540447 CGB3P0DN86 165 aa6.49□□□□□ -1.37
YBX3-208ENST00000540447 SPAG11AQ6PDA7 123 aa6.49□□□□□ -1.37
YBX3-208ENST00000540447 ALPK3Q96L96 1907 aa6.49□□□□□ -1.37
YBX3-208ENST00000540447 APOC4P55056 127 aa6.49□□□□□ -1.37
YBX3-208ENST00000540447 SBSPONQ8IVN8 264 aa6.49□□□□□ -1.37
YBX3-208ENST00000540447 USF3Q68DE3 2245 aa6.49□□□□□ -1.37
YBX3-208ENST00000540447 PLXNA2O75051 1894 aa6.49□□□□□ -1.37
YBX3-208ENST00000540447 IGF1P05019 195 aa6.49□□□□□ -1.37
YBX3-208ENST00000540447 Q6ZVQ6 151 aa6.49□□□□□ -1.37
YBX3-208ENST00000540447 Q8N7P7 452 aa6.49□□□□□ -1.37
YBX3-208ENST00000540447 MDFIQ99750 246 aa6.49□□□□□ -1.37
YBX3-208ENST00000540447 CGB7P0DN87 165 aa6.48□□□□□ -1.37
YBX3-208ENST00000540447 NHLRC4P0CG21 123 aaPredicted RBP6.48□□□□□ -1.37
YBX3-208ENST00000540447 IGHV4-30-4P0DP06 118 aa6.48□□□□□ -1.37
YBX3-208ENST00000540447 IGHV4-31P0DP07 118 aa6.48□□□□□ -1.37
YBX3-208ENST00000540447 ADAMTSL4-AS1Q5T5F5 129 aa6.48□□□□□ -1.37
YBX3-208ENST00000540447 IGF2-ASQ6U949 168 aa6.48□□□□□ -1.37
YBX3-208ENST00000540447 CNFNQ9BYD5 112 aa6.48□□□□□ -1.37
YBX3-208ENST00000540447 K7EMT4 169 aa6.48□□□□□ -1.37
YBX3-208ENST00000540447 CCL18P55774 89 aa6.48□□□□□ -1.37
YBX3-208ENST00000540447 PLXNB1O43157 2135 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 88.2 ms