RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 KRTAP1-5Q9BYS1 174 aa8.59□□□□□ -1.03
CLSTN3-208ENST00000538933 ST20Q9HBF5 79 aa8.59□□□□□ -1.03
CLSTN3-208ENST00000538933 LAMTOR2Q9Y2Q5 125 aa8.59□□□□□ -1.03
CLSTN3-208ENST00000538933 ICOSQ9Y6W8 199 aa8.59□□□□□ -1.03
CLSTN3-208ENST00000538933 NUDT3O95989 172 aa8.58□□□□□ -1.04
CLSTN3-208ENST00000538933 NEXN-AS1Q8NBZ9 246 aa8.58□□□□□ -1.04
CLSTN3-208ENST00000538933 MAP1LC3AQ9H492 121 aa8.58□□□□□ -1.04
CLSTN3-208ENST00000538933 LRP1Q07954 4544 aaKnown RBP8.57□□□□□ -1.04
CLSTN3-208ENST00000538933 TRBV7-3A0A075B6L6 115 aa8.57□□□□□ -1.04
CLSTN3-208ENST00000538933 LOC100131303A0A0U1RQF7 123 aa8.57□□□□□ -1.04
CLSTN3-208ENST00000538933 PHOX2AO14813 284 aa8.57□□□□□ -1.04
CLSTN3-208ENST00000538933 TNFRSF6BO95407 300 aa8.57□□□□□ -1.04
CLSTN3-208ENST00000538933 NPYP01303 97 aa8.57□□□□□ -1.04
CLSTN3-208ENST00000538933 MRPL23Q16540 153 aaKnown RBP8.57□□□□□ -1.04
CLSTN3-208ENST00000538933 C15orf53Q8NAA6 179 aa8.57□□□□□ -1.04
CLSTN3-208ENST00000538933 LOC389332A0A1B0GUA5 103 aa8.56□□□□□ -1.04
CLSTN3-208ENST00000538933 C1orf196B1AJZ1 125 aa8.56□□□□□ -1.04
CLSTN3-208ENST00000538933 GAS8-AS1O95177 125 aa8.56□□□□□ -1.04
CLSTN3-208ENST00000538933 PMCHP20382 165 aa8.56□□□□□ -1.04
CLSTN3-208ENST00000538933 SUMO2P61956 95 aaKnown RBP8.56□□□□□ -1.04
CLSTN3-208ENST00000538933 SH2D6Q7Z4S9 175 aa8.56□□□□□ -1.04
CLSTN3-208ENST00000538933 VSIG2Q96IQ7 327 aa8.56□□□□□ -1.04
CLSTN3-208ENST00000538933 LINC00588Q9Y4M8 146 aa8.56□□□□□ -1.04
CLSTN3-208ENST00000538933 A0A096LPF7 62 aa8.55□□□□□ -1.04
CLSTN3-208ENST00000538933 SDHAF1A6NFY7 115 aa8.55□□□□□ -1.04
CLSTN3-208ENST00000538933 H3BNG1 76 aa8.55□□□□□ -1.04
CLSTN3-208ENST00000538933 NRACQ8N912 160 aa8.55□□□□□ -1.04
CLSTN3-208ENST00000538933 ATP6V0E2Q8NHE4 81 aa8.55□□□□□ -1.04
CLSTN3-208ENST00000538933 C20orf78Q9BR46 151 aa8.55□□□□□ -1.04
CLSTN3-208ENST00000538933 ALKBH7Q9BT30 221 aaPredicted RBP8.55□□□□□ -1.04
CLSTN3-208ENST00000538933 IGHV3-38A0A0C4DH36 116 aa8.54□□□□□ -1.04
CLSTN3-208ENST00000538933 TRBV6-5A0A0K0K1A5 114 aa8.54□□□□□ -1.04
CLSTN3-208ENST00000538933 J3QL48 77 aa8.54□□□□□ -1.04
CLSTN3-208ENST00000538933 RAB5BP61020 215 aa8.54□□□□□ -1.04
CLSTN3-208ENST00000538933 NEGR1Q7Z3B1 354 aa8.54□□□□□ -1.04
CLSTN3-208ENST00000538933 DAZ4Q86SG3 579 aaKnown RBP8.54□□□□□ -1.04
CLSTN3-208ENST00000538933 PRSS3P2Q8NHM4 247 aa8.54□□□□□ -1.04
CLSTN3-208ENST00000538933 KIR2DL4Q99706 377 aa8.54□□□□□ -1.04
CLSTN3-208ENST00000538933 DAZ3Q9NR90 486 aaKnown RBP8.54□□□□□ -1.04
CLSTN3-208ENST00000538933 VCYO14598 125 aa8.53□□□□□ -1.04
CLSTN3-208ENST00000538933 SMR3BP02814 79 aaPredicted RBP8.53□□□□□ -1.04
CLSTN3-208ENST00000538933 FCER1GP30273 86 aa8.53□□□□□ -1.04
CLSTN3-208ENST00000538933 FUSP35637 526 aaKnown RBP eCLIP8.53□□□□□ -1.04
CLSTN3-208ENST00000538933 UBE2D3P61077 147 aa8.53□□□□□ -1.04
CLSTN3-208ENST00000538933 UBE2D2P62837 147 aa8.53□□□□□ -1.04
CLSTN3-208ENST00000538933 COTL1Q14019 142 aa8.53□□□□□ -1.04
CLSTN3-208ENST00000538933 FA2HQ7L5A8 372 aa8.53□□□□□ -1.04
CLSTN3-208ENST00000538933 TMEM70Q9BUB7 260 aa8.53□□□□□ -1.04
CLSTN3-208ENST00000538933 SMIM2Q9BVW6 85 aa8.53□□□□□ -1.04
CLSTN3-208ENST00000538933 Q9UF83 564 aa8.53□□□□□ -1.04
CLSTN3-208ENST00000538933 RNF213Q63HN8 5207 aa8.53□□□□□ -1.04
CLSTN3-208ENST00000538933 I3L3M4 83 aa8.52□□□□□ -1.05
CLSTN3-208ENST00000538933 IQCJQ1A5X6 159 aa8.52□□□□□ -1.05
CLSTN3-208ENST00000538933 TMEM97Q5BJF2 176 aa8.52□□□□□ -1.05
CLSTN3-208ENST00000538933 BAGE3Q86Y29 109 aa8.52□□□□□ -1.05
CLSTN3-208ENST00000538933 Q9H8V8 135 aa8.52□□□□□ -1.05
CLSTN3-208ENST00000538933 NXT2Q9NPJ8 142 aaKnown RBP8.52□□□□□ -1.05
CLSTN3-208ENST00000538933 PGPEP1Q9NXJ5 209 aa8.52□□□□□ -1.05
CLSTN3-208ENST00000538933 DNAH8Q96JB1 4490 aa8.52□□□□□ -1.05
CLSTN3-208ENST00000538933 TCAPO15273 167 aa8.51□□□□□ -1.05
CLSTN3-208ENST00000538933 CCL18P55774 89 aa8.51□□□□□ -1.05
CLSTN3-208ENST00000538933 KRTAP10-1P60331 282 aa8.51□□□□□ -1.05
CLSTN3-208ENST00000538933 Q8N8P6 123 aa8.51□□□□□ -1.05
CLSTN3-208ENST00000538933 C18orf32Q8TCD1 76 aa8.51□□□□□ -1.05
CLSTN3-208ENST00000538933 DEFB104AQ8WTQ1 72 aa8.51□□□□□ -1.05
CLSTN3-208ENST00000538933 FAT3Q8TDW7 4589 aa8.51□□□□□ -1.05
CLSTN3-208ENST00000538933 IFI27P40305 119 aaPredicted RBP8.5□□□□□ -1.05
CLSTN3-208ENST00000538933 AMTP48728 403 aa8.5□□□□□ -1.05
CLSTN3-208ENST00000538933 POLR2KP53803 58 aaKnown RBP8.5□□□□□ -1.05
CLSTN3-208ENST00000538933 RPL32P62910 135 aaKnown RBP8.5□□□□□ -1.05
CLSTN3-208ENST00000538933 RNASEKQ6P5S7 137 aaKnown RBP8.5□□□□□ -1.05
CLSTN3-208ENST00000538933 Q6ZRN7 208 aaPredicted RBP8.5□□□□□ -1.05
CLSTN3-208ENST00000538933 GTSF1LQ9H1H1 148 aa8.5□□□□□ -1.05
CLSTN3-208ENST00000538933 TRBV25-1A0A075B6N4 114 aa8.49□□□□□ -1.05
CLSTN3-208ENST00000538933 TRBV27A0A0K0K1C4 114 aa8.49□□□□□ -1.05
CLSTN3-208ENST00000538933 KRTAP29-1A8MX34 341 aaPredicted RBP8.49□□□□□ -1.05
CLSTN3-208ENST00000538933 HIST1H2BKO60814 126 aa8.49□□□□□ -1.05
CLSTN3-208ENST00000538933 HIST1H2BJP06899 126 aa8.49□□□□□ -1.05
CLSTN3-208ENST00000538933 LINC00694P0DN24 101 aa8.49□□□□□ -1.05
CLSTN3-208ENST00000538933 HIST1H2BOP23527 126 aa8.49□□□□□ -1.05
CLSTN3-208ENST00000538933 HIST1H2BBP33778 126 aa8.49□□□□□ -1.05
CLSTN3-208ENST00000538933 HIST1H2BDP58876 126 aa8.49□□□□□ -1.05
CLSTN3-208ENST00000538933 HIST1H2BCP62807 126 aa8.49□□□□□ -1.05
CLSTN3-208ENST00000538933 HIST2H2BEQ16778 126 aa8.49□□□□□ -1.05
CLSTN3-208ENST00000538933 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.49□□□□□ -1.05
CLSTN3-208ENST00000538933 SERTAD4-AS1Q5TG53 156 aa8.49□□□□□ -1.05
CLSTN3-208ENST00000538933 HIST1H2BHQ93079 126 aa8.49□□□□□ -1.05
CLSTN3-208ENST00000538933 HIST1H2BNQ99877 126 aa8.49□□□□□ -1.05
CLSTN3-208ENST00000538933 HIST1H2BMQ99879 126 aa8.49□□□□□ -1.05
CLSTN3-208ENST00000538933 IGHV1-24A0A0C4DH33 117 aa8.48□□□□□ -1.05
CLSTN3-208ENST00000538933 PRSS47A8MTI9 375 aa8.48□□□□□ -1.05
CLSTN3-208ENST00000538933 UBE2L6O14933 153 aa8.48□□□□□ -1.05
CLSTN3-208ENST00000538933 S100A6P06703 90 aa8.48□□□□□ -1.05
CLSTN3-208ENST00000538933 Q0VG73 95 aa8.48□□□□□ -1.05
CLSTN3-208ENST00000538933 TRAV8-6A0A0B4J262 113 aa8.47□□□□□ -1.05
CLSTN3-208ENST00000538933 FAM229AH3BQW9 127 aa8.47□□□□□ -1.05
CLSTN3-208ENST00000538933 K7EMI3 77 aa8.47□□□□□ -1.05
CLSTN3-208ENST00000538933 LINC00614P0C842 121 aa8.47□□□□□ -1.05
CLSTN3-208ENST00000538933 NDUFA6P56556 154 aa8.47□□□□□ -1.05
CLSTN3-208ENST00000538933 LAGE3Q14657 143 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms