RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 TRAV2A0A0B4J234 112 aa9.63□□□□□ -0.87
LDLR-203ENST00000535915 A8MTW9 85 aa9.63□□□□□ -0.87
LDLR-203ENST00000535915 PGPEP1Q9NXJ5 209 aa9.63□□□□□ -0.87
LDLR-203ENST00000535915 J3QQQ9 107 aa9.62□□□□□ -0.87
LDLR-203ENST00000535915 M0R2P5 195 aa9.62□□□□□ -0.87
LDLR-203ENST00000535915 LGALS3P17931 250 aaKnown RBP9.62□□□□□ -0.87
LDLR-203ENST00000535915 SONP18583 2426 aaKnown RBP9.62□□□□□ -0.87
LDLR-203ENST00000535915 A8MWV9 139 aa9.62□□□□□ -0.87
LDLR-203ENST00000535915 XGP55808 180 aa9.62□□□□□ -0.87
LDLR-203ENST00000535915 ZNF415Q09FC8 603 aa9.62□□□□□ -0.87
LDLR-203ENST00000535915 VCX2Q9H322 139 aa9.62□□□□□ -0.87
LDLR-203ENST00000535915 TNFRSF18Q9Y5U5 241 aa9.61□□□□□ -0.87
LDLR-203ENST00000535915 IGLV4-3A0A075B6K6 122 aa9.61□□□□□ -0.87
LDLR-203ENST00000535915 UBE2D1P51668 147 aa9.61□□□□□ -0.87
LDLR-203ENST00000535915 GAGE5Q13069 117 aa9.61□□□□□ -0.87
LDLR-203ENST00000535915 GAGE6Q13070 117 aa9.61□□□□□ -0.87
LDLR-203ENST00000535915 LINC01587Q99440 93 aa9.61□□□□□ -0.87
LDLR-203ENST00000535915 DEFB114Q30KQ6 69 aa9.6□□□□□ -0.87
LDLR-203ENST00000535915 RAX2Q96IS3 184 aa9.6□□□□□ -0.87
LDLR-203ENST00000535915 EDA2RQ9HAV5 297 aa9.6□□□□□ -0.87
LDLR-203ENST00000535915 IGHV3-64A0A075B6Q5 118 aa9.6□□□□□ -0.87
LDLR-203ENST00000535915 A0A0J9YXV3 536 aa9.6□□□□□ -0.87
LDLR-203ENST00000535915 TMEM223A0PJW6 202 aa9.6□□□□□ -0.87
LDLR-203ENST00000535915 B5MCH6 92 aa9.6□□□□□ -0.87
LDLR-203ENST00000535915 SLC25A29Q8N8R3 303 aa9.6□□□□□ -0.87
LDLR-203ENST00000535915 CD28P10747 220 aa9.59□□□□□ -0.87
LDLR-203ENST00000535915 KRTAP1-3Q8IUG1 177 aa9.59□□□□□ -0.87
LDLR-203ENST00000535915 AMELXQ99217 191 aa9.59□□□□□ -0.87
LDLR-203ENST00000535915 RHODO00212 210 aa9.59□□□□□ -0.87
LDLR-203ENST00000535915 LEPROTO15243 131 aa9.59□□□□□ -0.87
LDLR-203ENST00000535915 ZNF22P17026 224 aaPredicted RBP9.59□□□□□ -0.87
LDLR-203ENST00000535915 ATP6V0E2Q8NHE4 81 aa9.59□□□□□ -0.87
LDLR-203ENST00000535915 IGHV3-30P01768 117 aa9.58□□□□□ -0.88
LDLR-203ENST00000535915 IGHV3-30-5P0DP03 117 aa9.58□□□□□ -0.88
LDLR-203ENST00000535915 Q6ZSV7 163 aa9.58□□□□□ -0.88
LDLR-203ENST00000535915 Q9UF83 564 aa9.58□□□□□ -0.88
LDLR-203ENST00000535915 CUBNO60494 3623 aa9.58□□□□□ -0.88
LDLR-203ENST00000535915 INSP01308 110 aa9.58□□□□□ -0.88
LDLR-203ENST00000535915 FHL3Q13643 280 aa9.58□□□□□ -0.88
LDLR-203ENST00000535915 CFAP126Q5VTH2 177 aa9.58□□□□□ -0.88
LDLR-203ENST00000535915 SFTA2Q6UW10 78 aa9.58□□□□□ -0.88
LDLR-203ENST00000535915 Q6ZSN1 163 aa9.58□□□□□ -0.88
LDLR-203ENST00000535915 CEMP1Q6PRD7 247 aaPredicted RBP9.58□□□□□ -0.88
LDLR-203ENST00000535915 SHISA2Q6UWI4 295 aa9.58□□□□□ -0.88
LDLR-203ENST00000535915 C11orf44Q8N8P7 122 aa9.58□□□□□ -0.88
LDLR-203ENST00000535915 FLNAP21333 2647 aaKnown RBP9.57□□□□□ -0.88
LDLR-203ENST00000535915 LOC107984156A0A0G2JMH3 177 aa9.57□□□□□ -0.88
LDLR-203ENST00000535915 PSMB2P49721 201 aa9.57□□□□□ -0.88
LDLR-203ENST00000535915 PIK3CD-AS1Q5SR53 167 aa9.57□□□□□ -0.88
LDLR-203ENST00000535915 ZFAND6Q6FIF0 208 aa9.57□□□□□ -0.88
LDLR-203ENST00000535915 NDUFA11Q86Y39 141 aa9.57□□□□□ -0.88
LDLR-203ENST00000535915 ARL17AQ8IVW1 177 aa9.57□□□□□ -0.88
LDLR-203ENST00000535915 TEX29Q8N6K0 151 aa9.57□□□□□ -0.88
LDLR-203ENST00000535915 PYGO1Q9Y3Y4 419 aa9.57□□□□□ -0.88
LDLR-203ENST00000535915 A0A1W2PRX2 142 aa9.57□□□□□ -0.88
LDLR-203ENST00000535915 TMEM86BQ8N661 226 aa9.57□□□□□ -0.88
LDLR-203ENST00000535915 C11orf72Q8NBR9 251 aa9.57□□□□□ -0.88
LDLR-203ENST00000535915 SMCPP49901 116 aaPredicted RBP9.56□□□□□ -0.88
LDLR-203ENST00000535915 PTH2Q96A98 100 aa9.56□□□□□ -0.88
LDLR-203ENST00000535915 DNAJC9-AS1A6NH13 148 aa9.56□□□□□ -0.88
LDLR-203ENST00000535915 RNASE13Q5GAN3 156 aaKnown RBP9.56□□□□□ -0.88
LDLR-203ENST00000535915 WFDC11Q8NEX6 87 aa9.56□□□□□ -0.88
LDLR-203ENST00000535915 SPXQ9BT56 116 aa9.56□□□□□ -0.88
LDLR-203ENST00000535915 XCL2Q9UBD3 114 aa9.56□□□□□ -0.88
LDLR-203ENST00000535915 FAM104AQ969W3 186 aa9.55□□□□□ -0.88
LDLR-203ENST00000535915 CCDC168Q8NDH2 2452 aa9.55□□□□□ -0.88
LDLR-203ENST00000535915 CFC1BP0CG36 223 aa9.55□□□□□ -0.88
LDLR-203ENST00000535915 CFC1P0CG37 223 aa9.55□□□□□ -0.88
LDLR-203ENST00000535915 PPDPFLQ8WWR9 84 aa9.55□□□□□ -0.88
LDLR-203ENST00000535915 LINC00467Q9BRT7 94 aa9.55□□□□□ -0.88
LDLR-203ENST00000535915 HERV-K104P63124 156 aa9.54□□□□□ -0.88
LDLR-203ENST00000535915 ODF3L2Q3SX64 289 aa9.54□□□□□ -0.88
LDLR-203ENST00000535915 STHQ8IWL8 128 aa9.54□□□□□ -0.88
LDLR-203ENST00000535915 IGHV3OR16-12A0A075B7B8 117 aa9.54□□□□□ -0.88
LDLR-203ENST00000535915 IGHV3-38A0A0C4DH36 116 aa9.54□□□□□ -0.88
LDLR-203ENST00000535915 CHCHD7Q9BUK0 85 aa9.54□□□□□ -0.88
LDLR-203ENST00000535915 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.53□□□□□ -0.88
LDLR-203ENST00000535915 IGKV2-29A2NJV5 120 aaPredicted RBP9.53□□□□□ -0.88
LDLR-203ENST00000535915 IGHV3-53P01767 116 aa9.53□□□□□ -0.88
LDLR-203ENST00000535915 MRPS36P82909 103 aaKnown RBP9.53□□□□□ -0.88
LDLR-203ENST00000535915 TIMM21Q9BVV7 248 aa9.53□□□□□ -0.88
LDLR-203ENST00000535915 SETD2Q9BYW2 2564 aaPredicted RBP9.53□□□□□ -0.88
LDLR-203ENST00000535915 TENM4Q6N022 2769 aa9.52□□□□□ -0.88
LDLR-203ENST00000535915 IGHV3-30-3P0DP02 117 aa9.52□□□□□ -0.88
LDLR-203ENST00000535915 UBE2D3P61077 147 aa9.52□□□□□ -0.88
LDLR-203ENST00000535915 UBE2D2P62837 147 aa9.52□□□□□ -0.88
LDLR-203ENST00000535915 BEAN1Q3B7T3 259 aa9.52□□□□□ -0.88
LDLR-203ENST00000535915 UBE2D4Q9Y2X8 147 aa9.52□□□□□ -0.88
LDLR-203ENST00000535915 NIPBLQ6KC79 2804 aaeCLIP9.52□□□□□ -0.88
LDLR-203ENST00000535915 CCL24O00175 119 aa9.52□□□□□ -0.89
LDLR-203ENST00000535915 RS1O15537 224 aa9.52□□□□□ -0.89
LDLR-203ENST00000535915 LYRM7Q5U5X0 104 aa9.52□□□□□ -0.89
LDLR-203ENST00000535915 TEN1Q86WV5 123 aa9.52□□□□□ -0.89
LDLR-203ENST00000535915 C10orf126Q8N4M7 172 aa9.52□□□□□ -0.89
LDLR-203ENST00000535915 DNAJC30Q96LL9 226 aa9.52□□□□□ -0.89
LDLR-203ENST00000535915 CARD19Q96LW7 228 aa9.52□□□□□ -0.89
LDLR-203ENST00000535915 SPANXA1Q9NS26 97 aa9.52□□□□□ -0.89
LDLR-203ENST00000535915 PRO1854Q9UHT4 67 aa9.52□□□□□ -0.89
LDLR-203ENST00000535915 TRAV25A0A0B4J276 109 aa9.52□□□□□ -0.89
LDLR-203ENST00000535915 A4D1N5 150 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 76.9 ms