RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 KRTAP10-4P60372 401 aaPredicted RBP9.49□□□□□ -0.89
VPS28-215ENST00000531924 KRTAP26-1Q6PEX3 210 aa9.49□□□□□ -0.89
VPS28-215ENST00000531924 C9orf62Q8N4C0 152 aa9.49□□□□□ -0.89
VPS28-215ENST00000531924 IGLV4-60A0A075B6I1 120 aa9.48□□□□□ -0.89
VPS28-215ENST00000531924 IGHV3-64A0A075B6Q5 118 aa9.48□□□□□ -0.89
VPS28-215ENST00000531924 SDIM1Q6ZPB5 146 aa9.48□□□□□ -0.89
VPS28-215ENST00000531924 NUDT10Q8NFP7 164 aa9.48□□□□□ -0.89
VPS28-215ENST00000531924 NUDT11Q96G61 164 aa9.48□□□□□ -0.89
VPS28-215ENST00000531924 RPP21Q9H633 154 aaKnown RBP9.48□□□□□ -0.89
VPS28-215ENST00000531924 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.48□□□□□ -0.89
VPS28-215ENST00000531924 TRBV20OR9-2A0A075B6H5 130 aa9.47□□□□□ -0.89
VPS28-215ENST00000531924 IGKV3OR2-268A0A0C4DH90 116 aa9.47□□□□□ -0.89
VPS28-215ENST00000531924 CTRLP40313 264 aa9.47□□□□□ -0.89
VPS28-215ENST00000531924 CNBPP62633 177 aaKnown RBP9.47□□□□□ -0.89
VPS28-215ENST00000531924 AMMECR1LQ6DCA0 310 aa9.47□□□□□ -0.89
VPS28-215ENST00000531924 CFAP161Q6P656 301 aa9.47□□□□□ -0.89
VPS28-215ENST00000531924 SLC51BQ86UW2 128 aa9.47□□□□□ -0.89
VPS28-215ENST00000531924 GFRA4Q9GZZ7 299 aa9.45□□□□□ -0.9
VPS28-215ENST00000531924 RNASE7Q9H1E1 156 aaKnown RBP9.45□□□□□ -0.9
VPS28-215ENST00000531924 TRAV26-2A0A0B4J265 109 aa9.44□□□□□ -0.9
VPS28-215ENST00000531924 GAGE12HA6NDE8 117 aa9.44□□□□□ -0.9
VPS28-215ENST00000531924 RNASEKQ6P5S7 137 aaKnown RBP9.44□□□□□ -0.9
VPS28-215ENST00000531924 TEX261Q6UWH6 196 aa9.44□□□□□ -0.9
VPS28-215ENST00000531924 TCTE3Q8IZS6 198 aa9.44□□□□□ -0.9
VPS28-215ENST00000531924 GATD1Q8NB37 220 aa9.44□□□□□ -0.9
VPS28-215ENST00000531924 OCC1Q8TAD7 63 aa9.44□□□□□ -0.9
VPS28-215ENST00000531924 PANO1I0J062 215 aa9.43□□□□□ -0.9
VPS28-215ENST00000531924 RNF185Q96GF1 192 aa9.43□□□□□ -0.9
VPS28-215ENST00000531924 CNFNQ9BYD5 112 aa9.43□□□□□ -0.9
VPS28-215ENST00000531924 GATCO43716 136 aaKnown RBP9.42□□□□□ -0.9
VPS28-215ENST00000531924 NCR2O95944 276 aa9.42□□□□□ -0.9
VPS28-215ENST00000531924 APCSP02743 223 aa9.42□□□□□ -0.9
VPS28-215ENST00000531924 BORCS7Q96B45 105 aa9.42□□□□□ -0.9
VPS28-215ENST00000531924 LRP1Q07954 4544 aaKnown RBP9.42□□□□□ -0.9
VPS28-215ENST00000531924 K7EN84 100 aa9.41□□□□□ -0.9
VPS28-215ENST00000531924 CEBPGP53567 150 aa9.41□□□□□ -0.9
VPS28-215ENST00000531924 RPL39LQ96EH5 51 aaKnown RBP9.41□□□□□ -0.9
VPS28-215ENST00000531924 BTF3L4Q96K17 158 aa9.41□□□□□ -0.9
VPS28-215ENST00000531924 PLA2G2DQ9UNK4 145 aa9.41□□□□□ -0.9
VPS28-215ENST00000531924 FAT3Q8TDW7 4589 aa9.4□□□□□ -0.9
VPS28-215ENST00000531924 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.4□□□□□ -0.9
VPS28-215ENST00000531924 A0A087WYN8 130 aa9.4□□□□□ -0.9
VPS28-215ENST00000531924 IGKV2-29A2NJV5 120 aaPredicted RBP9.4□□□□□ -0.9
VPS28-215ENST00000531924 A8MWL6 223 aa9.4□□□□□ -0.9
VPS28-215ENST00000531924 H7C423 109 aa9.4□□□□□ -0.9
VPS28-215ENST00000531924 SLPIP03973 132 aa9.4□□□□□ -0.9
VPS28-215ENST00000531924 CHTF8P0CG12 524 aa9.4□□□□□ -0.9
VPS28-215ENST00000531924 PMCHP20382 165 aa9.4□□□□□ -0.9
VPS28-215ENST00000531924 HNRNPA3P51991 378 aaKnown RBP9.4□□□□□ -0.9
VPS28-215ENST00000531924 HIGD2BQ4VC39 106 aa9.4□□□□□ -0.9
VPS28-215ENST00000531924 Q6ZNX1 250 aa9.4□□□□□ -0.9
VPS28-215ENST00000531924 C7orf33Q8WU49 177 aa9.4□□□□□ -0.9
VPS28-215ENST00000531924 GTSF1Q8WW33 167 aa9.4□□□□□ -0.9
VPS28-215ENST00000531924 CHCHD10Q8WYQ3 142 aaPredicted RBP9.4□□□□□ -0.9
VPS28-215ENST00000531924 TMEM101Q96IK0 257 aa9.4□□□□□ -0.9
VPS28-215ENST00000531924 HMCN2Q8NDA2 5059 aa9.4□□□□□ -0.9
VPS28-215ENST00000531924 PKHD1L1Q86WI1 4243 aa9.4□□□□□ -0.91
VPS28-215ENST00000531924 SDHAF1A6NFY7 115 aa9.39□□□□□ -0.91
VPS28-215ENST00000531924 FGF6P10767 208 aa9.39□□□□□ -0.91
VPS28-215ENST00000531924 RPS10P46783 165 aaKnown RBP9.39□□□□□ -0.91
VPS28-215ENST00000531924 FOXA3P55318 350 aaPredicted RBP9.39□□□□□ -0.91
VPS28-215ENST00000531924 BLOC1S1P78537 153 aa9.39□□□□□ -0.91
VPS28-215ENST00000531924 CIRBPQ14011 172 aaKnown RBP9.39□□□□□ -0.91
VPS28-215ENST00000531924 TMEM250H0YL14 139 aa9.38□□□□□ -0.91
VPS28-215ENST00000531924 I3L3M4 83 aa9.38□□□□□ -0.91
VPS28-215ENST00000531924 COX6A2Q02221 97 aa9.38□□□□□ -0.91
VPS28-215ENST00000531924 C15orf56Q8N910 161 aa9.38□□□□□ -0.91
VPS28-215ENST00000531924 SPACA4Q8TDM5 124 aa9.38□□□□□ -0.91
VPS28-215ENST00000531924 IGKV2-24A0A0C4DH68 120 aa9.37□□□□□ -0.91
VPS28-215ENST00000531924 ZNF25P17030 456 aaPredicted RBP9.37□□□□□ -0.91
VPS28-215ENST00000531924 MAJINQ3KP22 176 aa9.37□□□□□ -0.91
VPS28-215ENST00000531924 Q6ZRU5 148 aa9.37□□□□□ -0.91
VPS28-215ENST00000531924 ST20Q9HBF5 79 aa9.37□□□□□ -0.91
VPS28-215ENST00000531924 NDUFS6O75380 124 aaKnown RBP9.36□□□□□ -0.91
VPS28-215ENST00000531924 XCL1P47992 114 aa9.36□□□□□ -0.91
VPS28-215ENST00000531924 ALKAL2Q6UX46 152 aa9.36□□□□□ -0.91
VPS28-215ENST00000531924 FAM231DQ6ZW35 169 aa9.36□□□□□ -0.91
VPS28-215ENST00000531924 OR5A1Q8NGJ0 315 aa9.36□□□□□ -0.91
VPS28-215ENST00000531924 AKAP14Q86UN6 197 aa9.35□□□□□ -0.91
VPS28-215ENST00000531924 MRAP2Q96G30 205 aa9.35□□□□□ -0.91
VPS28-215ENST00000531924 EIF5A2Q9GZV4 153 aaKnown RBP9.35□□□□□ -0.91
VPS28-215ENST00000531924 PLAC8Q9NZF1 115 aa9.35□□□□□ -0.91
VPS28-215ENST00000531924 PKIGQ9Y2B9 76 aa9.35□□□□□ -0.91
VPS28-215ENST00000531924 GVQW2A0A096LPI5 108 aaPredicted RBP9.34□□□□□ -0.91
VPS28-215ENST00000531924 PHOX2AO14813 284 aa9.34□□□□□ -0.91
VPS28-215ENST00000531924 CT83Q5H943 113 aa9.34□□□□□ -0.91
VPS28-215ENST00000531924 PRSS3P2Q8NHM4 247 aa9.34□□□□□ -0.91
VPS28-215ENST00000531924 SMIM7Q9BQ49 75 aa9.34□□□□□ -0.91
VPS28-215ENST00000531924 TRBV6-5A0A0K0K1A5 114 aa9.33□□□□□ -0.92
VPS28-215ENST00000531924 A0A1B0GUT8 65 aa9.33□□□□□ -0.92
VPS28-215ENST00000531924 CCL25O15444 150 aa9.33□□□□□ -0.92
VPS28-215ENST00000531924 FOXI1Q12951 378 aa9.33□□□□□ -0.92
VPS28-215ENST00000531924 SS18Q15532 418 aa9.33□□□□□ -0.92
VPS28-215ENST00000531924 STPG4Q8N801 248 aa9.33□□□□□ -0.92
VPS28-215ENST00000531924 FAM210AQ96ND0 272 aa9.33□□□□□ -0.92
VPS28-215ENST00000531924 TMEM242Q9NWH2 141 aa9.33□□□□□ -0.92
VPS28-215ENST00000531924 LINC00474Q9P2X8 69 aa9.33□□□□□ -0.92
VPS28-215ENST00000531924 IGHV1-58A0A0C4DH39 117 aa9.32□□□□□ -0.92
VPS28-215ENST00000531924 HIGD1CA8MV81 97 aa9.32□□□□□ -0.92
VPS28-215ENST00000531924 LYPD6BQ8NI32 183 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 71.8 ms