RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 ANGP03950 147 aaKnown RBP6.93□□□□□ -1.3
CD44-227ENST00000528086 RPL23P62829 140 aaKnown RBP6.93□□□□□ -1.3
CD44-227ENST00000528086 LINC00269Q8N2A0 174 aa6.93□□□□□ -1.3
CD44-227ENST00000528086 ISOC2Q96AB3 205 aa6.93□□□□□ -1.3
CD44-227ENST00000528086 HERC1Q15751 4861 aa6.92□□□□□ -1.3
CD44-227ENST00000528086 HIGD1CA8MV81 97 aa6.92□□□□□ -1.3
CD44-227ENST00000528086 A8MWL6 223 aa6.92□□□□□ -1.3
CD44-227ENST00000528086 H7C1H1 209 aa6.92□□□□□ -1.3
CD44-227ENST00000528086 RPS10P46783 165 aaKnown RBP6.92□□□□□ -1.3
CD44-227ENST00000528086 Q0VG73 95 aa6.92□□□□□ -1.3
CD44-227ENST00000528086 ELOBQ15370 118 aa6.92□□□□□ -1.3
CD44-227ENST00000528086 TMEM97Q5BJF2 176 aa6.92□□□□□ -1.3
CD44-227ENST00000528086 Q5VSD8 79 aa6.92□□□□□ -1.3
CD44-227ENST00000528086 TSKUQ8WUA8 353 aa6.92□□□□□ -1.3
CD44-227ENST00000528086 COX11Q9Y6N1 276 aa6.92□□□□□ -1.3
CD44-227ENST00000528086 A0A1B0GUV1 79 aa6.91□□□□□ -1.3
CD44-227ENST00000528086 EPM2AB3EWF7 344 aa6.91□□□□□ -1.3
CD44-227ENST00000528086 USP17L23D6RBM5 183 aa6.91□□□□□ -1.3
CD44-227ENST00000528086 SLPIP03973 132 aa6.91□□□□□ -1.3
CD44-227ENST00000528086 PRSS1P07477 247 aa6.91□□□□□ -1.3
CD44-227ENST00000528086 NUP35Q8NFH5 326 aa6.91□□□□□ -1.3
CD44-227ENST00000528086 TMEM243Q9BU79 118 aa6.91□□□□□ -1.3
CD44-227ENST00000528086 LRP1Q07954 4544 aaKnown RBP6.9□□□□□ -1.3
CD44-227ENST00000528086 IGLV10-54A0A075B6I4 117 aa6.9□□□□□ -1.3
CD44-227ENST00000528086 KRTAP10-4P60372 401 aaPredicted RBP6.9□□□□□ -1.3
CD44-227ENST00000528086 MIAQ16674 131 aa6.9□□□□□ -1.3
CD44-227ENST00000528086 FRZBQ92765 325 aa6.9□□□□□ -1.3
CD44-227ENST00000528086 RMI2Q96E14 147 aa6.9□□□□□ -1.3
CD44-227ENST00000528086 C1orf43Q9BWL3 253 aa6.9□□□□□ -1.3
CD44-227ENST00000528086 TRBV6-5A0A0K0K1A5 114 aa6.89□□□□□ -1.31
CD44-227ENST00000528086 A0A1B0GUT8 65 aa6.89□□□□□ -1.31
CD44-227ENST00000528086 SDHAF1A6NFY7 115 aa6.89□□□□□ -1.31
CD44-227ENST00000528086 PANO1I0J062 215 aa6.89□□□□□ -1.31
CD44-227ENST00000528086 TSHBP01222 138 aa6.89□□□□□ -1.31
CD44-227ENST00000528086 RAB4AP20338 218 aa6.89□□□□□ -1.31
CD44-227ENST00000528086 POLR2KP53803 58 aaKnown RBP6.89□□□□□ -1.31
CD44-227ENST00000528086 REG3AQ06141 175 aa6.89□□□□□ -1.31
CD44-227ENST00000528086 TMEM241Q24JQ0 296 aa6.89□□□□□ -1.31
CD44-227ENST00000528086 SCXQ7RTU7 201 aa6.89□□□□□ -1.31
CD44-227ENST00000528086 AMN1Q8IY45 258 aa6.89□□□□□ -1.31
CD44-227ENST00000528086 TMEM191AQ9H0A3 160 aa6.89□□□□□ -1.31
CD44-227ENST00000528086 FAT3Q8TDW7 4589 aa6.88□□□□□ -1.31
CD44-227ENST00000528086 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.88□□□□□ -1.31
CD44-227ENST00000528086 IGKV2-29A2NJV5 120 aaPredicted RBP6.88□□□□□ -1.31
CD44-227ENST00000528086 SMKR1H3BMG3 65 aa6.88□□□□□ -1.31
CD44-227ENST00000528086 HLA-DQA1P01909 254 aa6.88□□□□□ -1.31
CD44-227ENST00000528086 CRPP02741 224 aa6.88□□□□□ -1.31
CD44-227ENST00000528086 ESDP10768 282 aa6.88□□□□□ -1.31
CD44-227ENST00000528086 AMTP48728 403 aa6.88□□□□□ -1.31
CD44-227ENST00000528086 COTL1Q14019 142 aa6.88□□□□□ -1.31
CD44-227ENST00000528086 NRACQ8N912 160 aa6.88□□□□□ -1.31
CD44-227ENST00000528086 SMIM27A0A1W2PRY6 76 aa6.87□□□□□ -1.31
CD44-227ENST00000528086 PKIAP61925 76 aa6.87□□□□□ -1.31
CD44-227ENST00000528086 FAM74A3Q4VXF1 159 aa6.87□□□□□ -1.31
CD44-227ENST00000528086 KCNIP4Q6PIL6 250 aa6.87□□□□□ -1.31
CD44-227ENST00000528086 NAT8Q9UHE5 227 aa6.87□□□□□ -1.31
CD44-227ENST00000528086 NCR2O95944 276 aa6.86□□□□□ -1.31
CD44-227ENST00000528086 ADIRFQ15847 76 aa6.86□□□□□ -1.31
CD44-227ENST00000528086 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.86□□□□□ -1.31
CD44-227ENST00000528086 CIRBP-AS1Q8TBR5 109 aa6.86□□□□□ -1.31
CD44-227ENST00000528086 INAFM2P0DMQ5 153 aa6.85□□□□□ -1.31
CD44-227ENST00000528086 FGF6P10767 208 aa6.85□□□□□ -1.31
CD44-227ENST00000528086 C15orf56Q8N910 161 aa6.85□□□□□ -1.31
CD44-227ENST00000528086 C9orf163Q8N9P6 203 aa6.85□□□□□ -1.31
CD44-227ENST00000528086 FAM104AQ969W3 186 aa6.85□□□□□ -1.31
CD44-227ENST00000528086 CHAC1Q9BUX1 264 aa6.85□□□□□ -1.31
CD44-227ENST00000528086 TMEM242Q9NWH2 141 aa6.85□□□□□ -1.31
CD44-227ENST00000528086 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.85□□□□□ -1.31
CD44-227ENST00000528086 TRBV27A0A0K0K1C4 114 aa6.84□□□□□ -1.31
CD44-227ENST00000528086 A0A1B0GXF2 115 aa6.84□□□□□ -1.31
CD44-227ENST00000528086 I3L3M4 83 aa6.84□□□□□ -1.31
CD44-227ENST00000528086 IFITM2Q01629 132 aa6.84□□□□□ -1.31
CD44-227ENST00000528086 PEA15Q15121 130 aa6.84□□□□□ -1.31
CD44-227ENST00000528086 MRPL51Q4U2R6 128 aaKnown RBP6.84□□□□□ -1.31
CD44-227ENST00000528086 FAM104BQ5XKR9 115 aa6.84□□□□□ -1.31
CD44-227ENST00000528086 SDIM1Q6ZPB5 146 aa6.84□□□□□ -1.31
CD44-227ENST00000528086 SMDT1Q9H4I9 107 aa6.84□□□□□ -1.31
CD44-227ENST00000528086 TRAV8-4A0A0B4J246 113 aa6.83□□□□□ -1.32
CD44-227ENST00000528086 RIGQ13278 110 aa6.83□□□□□ -1.32
CD44-227ENST00000528086 SMIM15Q7Z3B0 74 aa6.83□□□□□ -1.32
CD44-227ENST00000528086 LINC00528Q8N1L1 170 aa6.83□□□□□ -1.32
CD44-227ENST00000528086 MRAP2Q96G30 205 aa6.83□□□□□ -1.32
CD44-227ENST00000528086 ST20Q9HBF5 79 aa6.83□□□□□ -1.32
CD44-227ENST00000528086 NAT8BQ9UHF3 227 aa6.83□□□□□ -1.32
CD44-227ENST00000528086 GAGE12HA6NDE8 117 aa6.82□□□□□ -1.32
CD44-227ENST00000528086 APCSP02743 223 aa6.82□□□□□ -1.32
CD44-227ENST00000528086 PMCHP20382 165 aa6.82□□□□□ -1.32
CD44-227ENST00000528086 CNBPP62633 177 aaKnown RBP6.82□□□□□ -1.32
CD44-227ENST00000528086 FOXI1Q12951 378 aa6.82□□□□□ -1.32
CD44-227ENST00000528086 C14orf177Q52M58 125 aa6.82□□□□□ -1.32
CD44-227ENST00000528086 DGAT2L7PQ6IED9 249 aa6.82□□□□□ -1.32
CD44-227ENST00000528086 CHCHD10Q8WYQ3 142 aaPredicted RBP6.82□□□□□ -1.32
CD44-227ENST00000528086 DMBT1Q9UGM3 2413 aaPredicted RBP6.82□□□□□ -1.32
CD44-227ENST00000528086 IGKV3OR2-268A0A0C4DH90 116 aa6.81□□□□□ -1.32
CD44-227ENST00000528086 H7C423 109 aa6.81□□□□□ -1.32
CD44-227ENST00000528086 UBE2L6O14933 153 aa6.81□□□□□ -1.32
CD44-227ENST00000528086 CAMPP49913 170 aa6.81□□□□□ -1.32
CD44-227ENST00000528086 CIRBPQ14011 172 aaKnown RBP6.81□□□□□ -1.32
CD44-227ENST00000528086 MRPL52Q86TS9 123 aaKnown RBP6.81□□□□□ -1.32
CD44-227ENST00000528086 BORCS7Q96B45 105 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms