RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 PGLYRP4Q96LB8 373 aa6.83□□□□□ -1.32
CPSF1-203ENST00000527916 K7EN84 100 aa6.82□□□□□ -1.32
CPSF1-203ENST00000527916 MT1HL1P0DM35 61 aa6.82□□□□□ -1.32
CPSF1-203ENST00000527916 RPP21Q9H633 154 aaKnown RBP6.82□□□□□ -1.32
CPSF1-203ENST00000527916 HNRNPA3P51991 378 aaKnown RBP6.81□□□□□ -1.32
CPSF1-203ENST00000527916 NKX2-5P52952 324 aaPredicted RBP6.81□□□□□ -1.32
CPSF1-203ENST00000527916 GAGE6Q13070 117 aa6.81□□□□□ -1.32
CPSF1-203ENST00000527916 TWIST1Q15672 202 aa6.81□□□□□ -1.32
CPSF1-203ENST00000527916 DGAT2L7PQ6IED9 249 aa6.81□□□□□ -1.32
CPSF1-203ENST00000527916 KRTAP26-1Q6PEX3 210 aa6.81□□□□□ -1.32
CPSF1-203ENST00000527916 ALKAL2Q6UX46 152 aa6.81□□□□□ -1.32
CPSF1-203ENST00000527916 Q6ZRU5 148 aa6.81□□□□□ -1.32
CPSF1-203ENST00000527916 FAM231DQ6ZW35 169 aa6.81□□□□□ -1.32
CPSF1-203ENST00000527916 LINC00269Q8N2A0 174 aa6.81□□□□□ -1.32
CPSF1-203ENST00000527916 TMEM243Q9BU79 118 aa6.81□□□□□ -1.32
CPSF1-203ENST00000527916 RNASE7Q9H1E1 156 aaKnown RBP6.81□□□□□ -1.32
CPSF1-203ENST00000527916 TRAV8-4A0A0B4J246 113 aa6.8□□□□□ -1.32
CPSF1-203ENST00000527916 FOXA3P55318 350 aaPredicted RBP6.8□□□□□ -1.32
CPSF1-203ENST00000527916 A8MWL6 223 aa6.79□□□□□ -1.32
CPSF1-203ENST00000527916 USP17L23D6RBM5 183 aa6.79□□□□□ -1.32
CPSF1-203ENST00000527916 REG3AQ06141 175 aa6.79□□□□□ -1.32
CPSF1-203ENST00000527916 COTL1Q14019 142 aa6.79□□□□□ -1.32
CPSF1-203ENST00000527916 CT83Q5H943 113 aa6.79□□□□□ -1.32
CPSF1-203ENST00000527916 TEX261Q6UWH6 196 aa6.79□□□□□ -1.32
CPSF1-203ENST00000527916 GATD1Q8NB37 220 aa6.79□□□□□ -1.32
CPSF1-203ENST00000527916 C20orf203Q8NBC4 194 aa6.79□□□□□ -1.32
CPSF1-203ENST00000527916 CLRN3Q8NCR9 226 aa6.79□□□□□ -1.32
CPSF1-203ENST00000527916 GTSF1Q8WW33 167 aa6.79□□□□□ -1.32
CPSF1-203ENST00000527916 GATCO43716 136 aaKnown RBP6.78□□□□□ -1.32
CPSF1-203ENST00000527916 HLA-DQA1P01909 254 aa6.78□□□□□ -1.32
CPSF1-203ENST00000527916 SMIM15Q7Z3B0 74 aa6.78□□□□□ -1.32
CPSF1-203ENST00000527916 C9orf163Q8N9P6 203 aa6.78□□□□□ -1.32
CPSF1-203ENST00000527916 hCG_2014768A0A024R1R8 64 aa6.77□□□□□ -1.33
CPSF1-203ENST00000527916 IGLV4-60A0A075B6I1 120 aa6.77□□□□□ -1.33
CPSF1-203ENST00000527916 H7C423 109 aa6.77□□□□□ -1.33
CPSF1-203ENST00000527916 NCR2O95944 276 aa6.77□□□□□ -1.33
CPSF1-203ENST00000527916 PRSS1P07477 247 aa6.77□□□□□ -1.33
CPSF1-203ENST00000527916 FAM210AQ96ND0 272 aa6.77□□□□□ -1.33
CPSF1-203ENST00000527916 FAM231BA6NCW3 169 aa6.76□□□□□ -1.33
CPSF1-203ENST00000527916 UBE2L6O14933 153 aa6.76□□□□□ -1.33
CPSF1-203ENST00000527916 AMTP48728 403 aa6.76□□□□□ -1.33
CPSF1-203ENST00000527916 CLPSL2Q6UWE3 100 aa6.76□□□□□ -1.33
CPSF1-203ENST00000527916 EIF5A2Q9GZV4 153 aaKnown RBP6.76□□□□□ -1.33
CPSF1-203ENST00000527916 GFRA4Q9GZZ7 299 aa6.76□□□□□ -1.33
CPSF1-203ENST00000527916 TRAV26-2A0A0B4J265 109 aa6.75□□□□□ -1.33
CPSF1-203ENST00000527916 TRBV6-5A0A0K0K1A5 114 aa6.75□□□□□ -1.33
CPSF1-203ENST00000527916 LINC01551Q86U37 167 aa6.75□□□□□ -1.33
CPSF1-203ENST00000527916 OSTCQ9NRP0 149 aa6.75□□□□□ -1.33
CPSF1-203ENST00000527916 IGLV10-54A0A075B6I4 117 aa6.74□□□□□ -1.33
CPSF1-203ENST00000527916 ZNF727A8MUV8 499 aa6.74□□□□□ -1.33
CPSF1-203ENST00000527916 SRP19P09132 144 aaKnown RBP6.74□□□□□ -1.33
CPSF1-203ENST00000527916 CNBPP62633 177 aaKnown RBP6.74□□□□□ -1.33
CPSF1-203ENST00000527916 SDIM1Q6ZPB5 146 aa6.74□□□□□ -1.33
CPSF1-203ENST00000527916 TSKUQ8WUA8 353 aa6.74□□□□□ -1.33
CPSF1-203ENST00000527916 BORCS7Q96B45 105 aa6.74□□□□□ -1.33
CPSF1-203ENST00000527916 RPL39LQ96EH5 51 aaKnown RBP6.74□□□□□ -1.33
CPSF1-203ENST00000527916 SMIM7Q9BQ49 75 aa6.74□□□□□ -1.33
CPSF1-203ENST00000527916 TMEM191AQ9H0A3 160 aa6.74□□□□□ -1.33
CPSF1-203ENST00000527916 A0A1B0GUT8 65 aa6.73□□□□□ -1.33
CPSF1-203ENST00000527916 SDHAF1A6NFY7 115 aa6.73□□□□□ -1.33
CPSF1-203ENST00000527916 CEBPGP53567 150 aa6.73□□□□□ -1.33
CPSF1-203ENST00000527916 FAM74A3Q4VXF1 159 aa6.73□□□□□ -1.33
CPSF1-203ENST00000527916 HIGD1CA8MV81 97 aa6.72□□□□□ -1.33
CPSF1-203ENST00000527916 I3L3M4 83 aa6.72□□□□□ -1.33
CPSF1-203ENST00000527916 APCSP02743 223 aa6.72□□□□□ -1.33
CPSF1-203ENST00000527916 ZNF25P17030 456 aaPredicted RBP6.72□□□□□ -1.33
CPSF1-203ENST00000527916 CFAP161Q6P656 301 aa6.72□□□□□ -1.33
CPSF1-203ENST00000527916 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.71□□□□□ -1.34
CPSF1-203ENST00000527916 hDV102S1A0JD36 115 aa6.71□□□□□ -1.34
CPSF1-203ENST00000527916 GAS8-AS1O95177 125 aa6.71□□□□□ -1.34
CPSF1-203ENST00000527916 ESDP10768 282 aa6.71□□□□□ -1.34
CPSF1-203ENST00000527916 RAB4AP20338 218 aa6.71□□□□□ -1.34
CPSF1-203ENST00000527916 PMCHP20382 165 aa6.71□□□□□ -1.34
CPSF1-203ENST00000527916 CIRBPQ14011 172 aaKnown RBP6.71□□□□□ -1.34
CPSF1-203ENST00000527916 TMEM241Q24JQ0 296 aa6.71□□□□□ -1.34
CPSF1-203ENST00000527916 AMMECR1LQ6DCA0 310 aa6.71□□□□□ -1.34
CPSF1-203ENST00000527916 MRAP2Q96G30 205 aa6.71□□□□□ -1.34
CPSF1-203ENST00000527916 RNF185Q96GF1 192 aa6.71□□□□□ -1.34
CPSF1-203ENST00000527916 SMDT1Q9H4I9 107 aa6.71□□□□□ -1.34
CPSF1-203ENST00000527916 ST20Q9HBF5 79 aa6.71□□□□□ -1.34
CPSF1-203ENST00000527916 AP5S1Q9NUS5 200 aa6.71□□□□□ -1.34
CPSF1-203ENST00000527916 V9GYV3 84 aa6.71□□□□□ -1.34
CPSF1-203ENST00000527916 IGHV3-64A0A075B6Q5 118 aa6.7□□□□□ -1.34
CPSF1-203ENST00000527916 TRBV27A0A0K0K1C4 114 aa6.7□□□□□ -1.34
CPSF1-203ENST00000527916 SLPIP03973 132 aa6.7□□□□□ -1.34
CPSF1-203ENST00000527916 FGF6P10767 208 aa6.7□□□□□ -1.34
CPSF1-203ENST00000527916 POLR2KP53803 58 aaKnown RBP6.7□□□□□ -1.34
CPSF1-203ENST00000527916 RIGQ13278 110 aa6.7□□□□□ -1.34
CPSF1-203ENST00000527916 OR5A1Q8NGJ0 315 aa6.7□□□□□ -1.34
CPSF1-203ENST00000527916 ISOC2Q96AB3 205 aa6.7□□□□□ -1.34
CPSF1-203ENST00000527916 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.69□□□□□ -1.34
CPSF1-203ENST00000527916 A0A1B0GVG6 124 aa6.69□□□□□ -1.34
CPSF1-203ENST00000527916 IGKV2-29A2NJV5 120 aaPredicted RBP6.69□□□□□ -1.34
CPSF1-203ENST00000527916 GAGE12HA6NDE8 117 aa6.69□□□□□ -1.34
CPSF1-203ENST00000527916 PPP1R17O96001 155 aa6.69□□□□□ -1.34
CPSF1-203ENST00000527916 RNASEKQ6P5S7 137 aaKnown RBP6.69□□□□□ -1.34
CPSF1-203ENST00000527916 NUP35Q8NFH5 326 aa6.69□□□□□ -1.34
CPSF1-203ENST00000527916 CHCHD10Q8WYQ3 142 aaPredicted RBP6.69□□□□□ -1.34
CPSF1-203ENST00000527916 BTF3L4Q96K17 158 aa6.69□□□□□ -1.34
CPSF1-203ENST00000527916 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms