RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 Q8N3U1 123 aa9.38□□□□□ -0.91
CD44-224ENST00000526669 LAMTOR2Q9Y2Q5 125 aa9.38□□□□□ -0.91
CD44-224ENST00000526669 TRBV27A0A0K0K1C4 114 aa9.37□□□□□ -0.91
CD44-224ENST00000526669 TCAPO15273 167 aa9.37□□□□□ -0.91
CD44-224ENST00000526669 FCER1GP30273 86 aa9.37□□□□□ -0.91
CD44-224ENST00000526669 GAGE6Q13070 117 aa9.37□□□□□ -0.91
CD44-224ENST00000526669 TMEM97Q5BJF2 176 aa9.37□□□□□ -0.91
CD44-224ENST00000526669 CHCHD5Q9BSY4 110 aa9.37□□□□□ -0.91
CD44-224ENST00000526669 UPK3BQ9BT76 320 aa9.37□□□□□ -0.91
CD44-224ENST00000526669 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.36□□□□□ -0.91
CD44-224ENST00000526669 LCE6AA0A183 80 aa9.36□□□□□ -0.91
CD44-224ENST00000526669 IGKV2-29A2NJV5 120 aaPredicted RBP9.36□□□□□ -0.91
CD44-224ENST00000526669 SIVA1O15304 175 aa9.36□□□□□ -0.91
CD44-224ENST00000526669 IGHV3-30P01768 117 aa9.36□□□□□ -0.91
CD44-224ENST00000526669 IGHV3-33P01772 117 aa9.36□□□□□ -0.91
CD44-224ENST00000526669 IGHV3-30-3P0DP02 117 aa9.36□□□□□ -0.91
CD44-224ENST00000526669 IGHV3-30-5P0DP03 117 aa9.36□□□□□ -0.91
CD44-224ENST00000526669 IFI27P40305 119 aaPredicted RBP9.36□□□□□ -0.91
CD44-224ENST00000526669 RPL32P62910 135 aaKnown RBP9.36□□□□□ -0.91
CD44-224ENST00000526669 KIR2DL4Q99706 377 aa9.36□□□□□ -0.91
CD44-224ENST00000526669 TMEM243Q9BU79 118 aa9.36□□□□□ -0.91
CD44-224ENST00000526669 Q9H8V8 135 aa9.36□□□□□ -0.91
CD44-224ENST00000526669 TMEM262E9PQX1 116 aa9.35□□□□□ -0.91
CD44-224ENST00000526669 M0R2N4 97 aa9.35□□□□□ -0.91
CD44-224ENST00000526669 Q8N8P6 123 aa9.35□□□□□ -0.91
CD44-224ENST00000526669 C18orf32Q8TCD1 76 aa9.35□□□□□ -0.91
CD44-224ENST00000526669 CHCHD7Q9BUK0 85 aa9.35□□□□□ -0.91
CD44-224ENST00000526669 KMT2CQ8NEZ4 4911 aaKnown RBP9.34□□□□□ -0.91
CD44-224ENST00000526669 PRSS47A8MTI9 375 aa9.34□□□□□ -0.91
CD44-224ENST00000526669 UBE2L6O14933 153 aa9.34□□□□□ -0.91
CD44-224ENST00000526669 PRSS3P2Q8NHM4 247 aa9.34□□□□□ -0.91
CD44-224ENST00000526669 DNAH10Q8IVF4 4471 aa9.33□□□□□ -0.92
CD44-224ENST00000526669 DNAH2Q9P225 4427 aa9.33□□□□□ -0.92
CD44-224ENST00000526669 FRAS1Q86XX4 4008 aa9.33□□□□□ -0.92
CD44-224ENST00000526669 MPV17L2Q567V2 206 aa9.33□□□□□ -0.92
CD44-224ENST00000526669 NIT1Q86X76 327 aa9.33□□□□□ -0.92
CD44-224ENST00000526669 ESDP10768 282 aa9.32□□□□□ -0.92
CD44-224ENST00000526669 FA2HQ7L5A8 372 aa9.32□□□□□ -0.92
CD44-224ENST00000526669 NXT2Q9NPJ8 142 aaKnown RBP9.32□□□□□ -0.92
CD44-224ENST00000526669 A0A087WX48 190 aa9.31□□□□□ -0.92
CD44-224ENST00000526669 DNAH10OSP0CZ25 163 aa9.31□□□□□ -0.92
CD44-224ENST00000526669 RPL39P62891 51 aaKnown RBP9.31□□□□□ -0.92
CD44-224ENST00000526669 LINC01556Q5JQF7 62 aa9.31□□□□□ -0.92
CD44-224ENST00000526669 Q8N976 141 aa9.31□□□□□ -0.92
CD44-224ENST00000526669 KRTAP1-5Q9BYS1 174 aa9.31□□□□□ -0.92
CD44-224ENST00000526669 RYR2Q92736 4967 aa9.31□□□□□ -0.92
CD44-224ENST00000526669 NBDYA0A0U1RRE5 68 aa9.3□□□□□ -0.92
CD44-224ENST00000526669 LAGE3Q14657 143 aa9.3□□□□□ -0.92
CD44-224ENST00000526669 AMMECR1LQ6DCA0 310 aa9.3□□□□□ -0.92
CD44-224ENST00000526669 RNASEKQ6P5S7 137 aaKnown RBP9.3□□□□□ -0.92
CD44-224ENST00000526669 URB1-AS1Q96HZ7 61 aa9.3□□□□□ -0.92
CD44-224ENST00000526669 IGLV4-60A0A075B6I1 120 aa9.29□□□□□ -0.92
CD44-224ENST00000526669 FGF6P10767 208 aa9.29□□□□□ -0.92
CD44-224ENST00000526669 RBX1P62877 108 aa9.29□□□□□ -0.92
CD44-224ENST00000526669 CLPSL2Q6UWE3 100 aa9.29□□□□□ -0.92
CD44-224ENST00000526669 C20orf203Q8NBC4 194 aa9.29□□□□□ -0.92
CD44-224ENST00000526669 DNAH17Q9UFH2 4485 aa9.28□□□□□ -0.92
CD44-224ENST00000526669 ANGP03950 147 aaKnown RBP9.28□□□□□ -0.92
CD44-224ENST00000526669 ORMDL2Q53FV1 153 aa9.28□□□□□ -0.92
CD44-224ENST00000526669 BAGE3Q86Y29 109 aa9.28□□□□□ -0.92
CD44-224ENST00000526669 KLK12Q9UKR0 248 aa9.28□□□□□ -0.92
CD44-224ENST00000526669 BTF3P20290 206 aaKnown RBP9.27□□□□□ -0.93
CD44-224ENST00000526669 PKIAP61925 76 aa9.27□□□□□ -0.93
CD44-224ENST00000526669 H7C423 109 aa9.26□□□□□ -0.93
CD44-224ENST00000526669 HIST1H2BKO60814 126 aa9.26□□□□□ -0.93
CD44-224ENST00000526669 HIST1H2BJP06899 126 aa9.26□□□□□ -0.93
CD44-224ENST00000526669 LINC00614P0C842 121 aa9.26□□□□□ -0.93
CD44-224ENST00000526669 HIST1H2BOP23527 126 aa9.26□□□□□ -0.93
CD44-224ENST00000526669 HIST1H2BBP33778 126 aa9.26□□□□□ -0.93
CD44-224ENST00000526669 HIST1H2BDP58876 126 aa9.26□□□□□ -0.93
CD44-224ENST00000526669 HIST1H2BCP62807 126 aa9.26□□□□□ -0.93
CD44-224ENST00000526669 PMCHL1Q16048 86 aa9.26□□□□□ -0.93
CD44-224ENST00000526669 HIST2H2BEQ16778 126 aa9.26□□□□□ -0.93
CD44-224ENST00000526669 RNASE13Q5GAN3 156 aaKnown RBP9.26□□□□□ -0.93
CD44-224ENST00000526669 TTC32Q5I0X7 151 aa9.26□□□□□ -0.93
CD44-224ENST00000526669 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.26□□□□□ -0.93
CD44-224ENST00000526669 C2orf66Q6UXQ4 117 aa9.26□□□□□ -0.93
CD44-224ENST00000526669 HIST1H2BHQ93079 126 aa9.26□□□□□ -0.93
CD44-224ENST00000526669 TMEM18Q96B42 140 aa9.26□□□□□ -0.93
CD44-224ENST00000526669 HIST1H2BNQ99877 126 aa9.26□□□□□ -0.93
CD44-224ENST00000526669 HIST1H2BMQ99879 126 aa9.26□□□□□ -0.93
CD44-224ENST00000526669 Q9HAA7 133 aa9.26□□□□□ -0.93
CD44-224ENST00000526669 AP5S1Q9NUS5 200 aa9.26□□□□□ -0.93
CD44-224ENST00000526669 TRAV9-2A0A087WT02 112 aa9.25□□□□□ -0.93
CD44-224ENST00000526669 IGKV3OR2-268A0A0C4DH90 116 aa9.25□□□□□ -0.93
CD44-224ENST00000526669 LINC01546A6NGU7 62 aa9.25□□□□□ -0.93
CD44-224ENST00000526669 C1orf196B1AJZ1 125 aa9.25□□□□□ -0.93
CD44-224ENST00000526669 RAB5BP61020 215 aa9.25□□□□□ -0.93
CD44-224ENST00000526669 Q0VG73 95 aa9.25□□□□□ -0.93
CD44-224ENST00000526669 Q6ZR54 194 aa9.25□□□□□ -0.93
CD44-224ENST00000526669 C10orf126Q8N4M7 172 aa9.25□□□□□ -0.93
CD44-224ENST00000526669 UBE2WQ96B02 151 aa9.25□□□□□ -0.93
CD44-224ENST00000526669 TMEM101Q96IK0 257 aa9.25□□□□□ -0.93
CD44-224ENST00000526669 OPRPNQ99935 248 aaPredicted RBP9.25□□□□□ -0.93
CD44-224ENST00000526669 CYSLTR1Q9Y271 337 aa9.25□□□□□ -0.93
CD44-224ENST00000526669 UBE2D4Q9Y2X8 147 aa9.25□□□□□ -0.93
CD44-224ENST00000526669 A0A1B0GUV1 79 aa9.24□□□□□ -0.93
CD44-224ENST00000526669 K7EMI3 77 aa9.24□□□□□ -0.93
CD44-224ENST00000526669 SERF1AO75920 110 aa9.24□□□□□ -0.93
CD44-224ENST00000526669 LINC00310P59036 64 aa9.24□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 99.7 ms