RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 PEMTQ9UBM1 199 aa5.39□□□□□ -1.55
LIMCH1-207ENST00000508466 FN1P02751 2386 aaKnown RBP5.39□□□□□ -1.55
LIMCH1-207ENST00000508466 A0A0B4J2C4 111 aa5.39□□□□□ -1.55
LIMCH1-207ENST00000508466 LST1O00453 97 aa5.39□□□□□ -1.55
LIMCH1-207ENST00000508466 RNASE3P12724 160 aaKnown RBP5.39□□□□□ -1.55
LIMCH1-207ENST00000508466 IGLV11-55A0A075B6I3 123 aa5.38□□□□□ -1.55
LIMCH1-207ENST00000508466 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.38□□□□□ -1.55
LIMCH1-207ENST00000508466 IGLV1-47P01700 117 aa5.38□□□□□ -1.55
LIMCH1-207ENST00000508466 TRBV12-3P01733 135 aa5.38□□□□□ -1.55
LIMCH1-207ENST00000508466 MBD3L2Q8NHZ7 208 aaPredicted RBP5.38□□□□□ -1.55
LIMCH1-207ENST00000508466 LEPROTO15243 131 aa5.38□□□□□ -1.55
LIMCH1-207ENST00000508466 FHL2Q14192 279 aa5.38□□□□□ -1.55
LIMCH1-207ENST00000508466 CITED2Q99967 270 aaPredicted RBP5.38□□□□□ -1.55
LIMCH1-207ENST00000508466 CUL9Q8IWT3 2517 aa5.37□□□□□ -1.55
LIMCH1-207ENST00000508466 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.37□□□□□ -1.55
LIMCH1-207ENST00000508466 IGKV2-29A2NJV5 120 aaPredicted RBP5.37□□□□□ -1.55
LIMCH1-207ENST00000508466 PIK3CD-AS1Q5SR53 167 aa5.37□□□□□ -1.55
LIMCH1-207ENST00000508466 LITAFQ99732 161 aa5.37□□□□□ -1.55
LIMCH1-207ENST00000508466 FBN2P35556 2912 aa5.37□□□□□ -1.55
LIMCH1-207ENST00000508466 FAM223BA6NKX1 122 aa5.37□□□□□ -1.55
LIMCH1-207ENST00000508466 CD28P10747 220 aa5.37□□□□□ -1.55
LIMCH1-207ENST00000508466 UNQ9165/PRO28630Q6UXU0 137 aa5.37□□□□□ -1.55
LIMCH1-207ENST00000508466 LINC00643Q86TS7 51 aa5.37□□□□□ -1.55
LIMCH1-207ENST00000508466 C20orf197Q8N268 126 aa5.37□□□□□ -1.55
LIMCH1-207ENST00000508466 VCYO14598 125 aa5.37□□□□□ -1.55
LIMCH1-207ENST00000508466 NCR3O14931 201 aa5.37□□□□□ -1.55
LIMCH1-207ENST00000508466 USP9YO00507 2555 aaPredicted RBP5.36□□□□□ -1.55
LIMCH1-207ENST00000508466 TLN2Q9Y4G6 2542 aa5.36□□□□□ -1.55
LIMCH1-207ENST00000508466 FAM236DA0A1B0GTK5 79 aa5.36□□□□□ -1.55
LIMCH1-207ENST00000508466 FAM236CP0DP71 79 aa5.36□□□□□ -1.55
LIMCH1-207ENST00000508466 ZFAND2AQ8N6M9 145 aa5.36□□□□□ -1.55
LIMCH1-207ENST00000508466 ANKRD17O75179 2603 aaKnown RBP5.36□□□□□ -1.55
LIMCH1-207ENST00000508466 H3BT86 120 aa5.36□□□□□ -1.55
LIMCH1-207ENST00000508466 LINC00315P59091 139 aa5.36□□□□□ -1.55
LIMCH1-207ENST00000508466 DEFB109BQ30KR1 87 aa5.36□□□□□ -1.55
LIMCH1-207ENST00000508466 TMEM61Q8N0U2 210 aa5.36□□□□□ -1.55
LIMCH1-207ENST00000508466 DCANP1Q8TF63 244 aa5.36□□□□□ -1.55
LIMCH1-207ENST00000508466 LINC00846Q9NV44 126 aa5.36□□□□□ -1.55
LIMCH1-207ENST00000508466 ZANQ9Y493 2812 aa5.36□□□□□ -1.55
LIMCH1-207ENST00000508466 IGKV3OR2-268A0A0C4DH90 116 aa5.35□□□□□ -1.55
LIMCH1-207ENST00000508466 POLR2KP53803 58 aaKnown RBP5.35□□□□□ -1.55
LIMCH1-207ENST00000508466 LINC00474Q9P2X8 69 aa5.35□□□□□ -1.55
LIMCH1-207ENST00000508466 SNURFQ9Y675 71 aa5.35□□□□□ -1.55
LIMCH1-207ENST00000508466 IGHV3-16A0A0C4DH30 117 aa5.35□□□□□ -1.55
LIMCH1-207ENST00000508466 CD59P13987 128 aa5.35□□□□□ -1.55
LIMCH1-207ENST00000508466 PFN2P35080 140 aa5.35□□□□□ -1.55
LIMCH1-207ENST00000508466 ZFYVE26Q68DK2 2539 aa5.35□□□□□ -1.55
LIMCH1-207ENST00000508466 AKAP9Q99996 3911 aa5.35□□□□□ -1.55
LIMCH1-207ENST00000508466 OTOGLQ3ZCN5 2332 aa5.35□□□□□ -1.55
LIMCH1-207ENST00000508466 IGLV4-3A0A075B6K6 122 aa5.34□□□□□ -1.55
LIMCH1-207ENST00000508466 COX8CQ7Z4L0 72 aa5.34□□□□□ -1.55
LIMCH1-207ENST00000508466 FAM19A1Q7Z5A9 133 aa5.34□□□□□ -1.55
LIMCH1-207ENST00000508466 LINC01561Q8N1V8 128 aa5.34□□□□□ -1.55
LIMCH1-207ENST00000508466 PAPPA-AS1Q5QFB9 102 aa5.34□□□□□ -1.55
LIMCH1-207ENST00000508466 LINC00311Q8N616 119 aa5.34□□□□□ -1.55
LIMCH1-207ENST00000508466 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.34□□□□□ -1.55
LIMCH1-207ENST00000508466 BRK1Q8WUW1 75 aa5.34□□□□□ -1.55
LIMCH1-207ENST00000508466 CDKN2A-AS1Q9UH64 79 aa5.34□□□□□ -1.55
LIMCH1-207ENST00000508466 C22orf24Q9Y442 160 aa5.34□□□□□ -1.55
LIMCH1-207ENST00000508466 FAM215AQ9Y5M1 114 aa5.34□□□□□ -1.55
LIMCH1-207ENST00000508466 TRAV21A0A0B4J279 112 aa5.34□□□□□ -1.56
LIMCH1-207ENST00000508466 USP17L23D6RBM5 183 aa5.34□□□□□ -1.56
LIMCH1-207ENST00000508466 ATP6V0E1O15342 81 aa5.34□□□□□ -1.56
LIMCH1-207ENST00000508466 CRYGAP11844 174 aa5.34□□□□□ -1.56
LIMCH1-207ENST00000508466 C8orf31Q8N9H6 132 aa5.34□□□□□ -1.56
LIMCH1-207ENST00000508466 CCDC140Q96MF4 163 aa5.34□□□□□ -1.56
LIMCH1-207ENST00000508466 ARRDC1-AS1Q9H2J1 176 aa5.34□□□□□ -1.56
LIMCH1-207ENST00000508466 ZFAND3Q9H8U3 227 aa5.34□□□□□ -1.56
LIMCH1-207ENST00000508466 SOSTDC1Q6X4U4 206 aa5.33□□□□□ -1.56
LIMCH1-207ENST00000508466 RNASE6Q93091 150 aaKnown RBP5.33□□□□□ -1.56
LIMCH1-207ENST00000508466 Q9H8V8 135 aa5.33□□□□□ -1.56
LIMCH1-207ENST00000508466 DPM3Q9P2X0 92 aa5.33□□□□□ -1.56
LIMCH1-207ENST00000508466 POLQO75417 2590 aa5.33□□□□□ -1.56
LIMCH1-207ENST00000508466 CCL21O00585 134 aa5.33□□□□□ -1.56
LIMCH1-207ENST00000508466 DNAL4O96015 105 aa5.33□□□□□ -1.56
LIMCH1-207ENST00000508466 C9orf139Q6ZV77 190 aa5.33□□□□□ -1.56
LIMCH1-207ENST00000508466 IGHV7-81A0A0B4J1V7 117 aa5.32□□□□□ -1.56
LIMCH1-207ENST00000508466 COX6A2Q02221 97 aa5.32□□□□□ -1.56
LIMCH1-207ENST00000508466 RPL18AQ02543 176 aaKnown RBP5.32□□□□□ -1.56
LIMCH1-207ENST00000508466 MIAQ16674 131 aa5.32□□□□□ -1.56
LIMCH1-207ENST00000508466 HIST2H2BDQ6DRA6 164 aa5.32□□□□□ -1.56
LIMCH1-207ENST00000508466 NUP37Q8NFH4 326 aa5.32□□□□□ -1.56
LIMCH1-207ENST00000508466 MPLKIPQ8TAP9 179 aa5.32□□□□□ -1.56
LIMCH1-207ENST00000508466 KIF25-AS1Q9Y6Z4 181 aa5.32□□□□□ -1.56
LIMCH1-207ENST00000508466 A0A087WYN8 130 aa5.32□□□□□ -1.56
LIMCH1-207ENST00000508466 IGHG2P01859 326 aa5.32□□□□□ -1.56
LIMCH1-207ENST00000508466 SS18Q15532 418 aa5.32□□□□□ -1.56
LIMCH1-207ENST00000508466 S100A7L2Q5SY68 101 aa5.32□□□□□ -1.56
LIMCH1-207ENST00000508466 C5orf38Q86SI9 138 aa5.32□□□□□ -1.56
LIMCH1-207ENST00000508466 TMEM141Q96I45 108 aa5.32□□□□□ -1.56
LIMCH1-207ENST00000508466 TMEM243Q9BU79 118 aa5.32□□□□□ -1.56
LIMCH1-207ENST00000508466 IGHV4-4A0A075B6R2 117 aa5.32□□□□□ -1.56
LIMCH1-207ENST00000508466 FAM240AA0A1B0GVK7 77 aa5.32□□□□□ -1.56
LIMCH1-207ENST00000508466 AVPP01185 164 aa5.32□□□□□ -1.56
LIMCH1-207ENST00000508466 CDSNQ15517 529 aa5.32□□□□□ -1.56
LIMCH1-207ENST00000508466 NBPF19A0A087WUL8 3843 aa5.31□□□□□ -1.56
LIMCH1-207ENST00000508466 ATOX1O00244 68 aa5.31□□□□□ -1.56
LIMCH1-207ENST00000508466 PRB2P02812 416 aaPredicted RBP5.31□□□□□ -1.56
LIMCH1-207ENST00000508466 RPL28P46779 137 aaKnown RBP5.31□□□□□ -1.56
LIMCH1-207ENST00000508466 C20orf203Q8NBC4 194 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms