RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 PEBP1P30086 187 aaKnown RBP1.38□□□□□ -2.19
HMGB1-208ENST00000490788 ZNF138P52744 262 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 SNRPD3P62318 126 aaKnown RBP1.38□□□□□ -2.19
HMGB1-208ENST00000490788 EGFEM1PQ0D2K5 195 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 FXYD3Q14802 87 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 ABCA11PQ4W5N1 156 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 SLC48A1Q6P1K1 146 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 UNQ9165/PRO28630Q6UXU0 137 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 Q6ZR03 302 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 FP248Q71RG6 208 aaPredicted RBP1.38□□□□□ -2.19
HMGB1-208ENST00000490788 LINC00305Q7Z4B0 112 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 MDP1Q86V88 176 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 OR5AS1Q8N127 324 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 RPP25LQ8N5L8 163 aaKnown RBP1.38□□□□□ -2.19
HMGB1-208ENST00000490788 OR8A1Q8NGG7 326 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 PIFOQ8TCI5 191 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 FXYD5Q96DB9 178 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 NMNAT3Q96T66 252 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 HIST1H4GQ99525 98 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 UPK3BQ9BT76 320 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 PROK2Q9HC23 129 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 TAS2R4Q9NYW5 299 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 OARD1Q9Y530 152 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 V9GYV3 84 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 CITO14578 2027 aa1.38□□□□□ -2.19
HMGB1-208ENST00000490788 NUP210LQ5VU65 1888 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 DENND4CQ5VZ89 1909 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 PIKFYVEQ9Y2I7 2098 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 TRBV25-1A0A075B6N4 114 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 IGKV2-28A0A075B6P5 120 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 IGHV3OR15-7A0A075B7D8 119 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 IGHV1OR21-1A0A087WYE8 117 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 TRBV6-6A0A0A6YYG2 114 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 TRGV5A0A0B4J1U4 118 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 MYMXA0A1B0GTQ4 84 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 SMIM27A0A1W2PRY6 76 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 PLAC8L1A1L4L8 177 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 C19orf71A6NCJ1 209 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 A6NDX4 124 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 LINC01549A6NIU2 74 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 H3BP45 60 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 ATOX1O00244 68 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 PEX7O00628 323 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 MRPS12O15235 138 aaKnown RBP1.37□□□□□ -2.19
HMGB1-208ENST00000490788 SLC25A20O43772 301 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 SS18L1O75177 396 aaPredicted RBP1.37□□□□□ -2.19
HMGB1-208ENST00000490788 INSP01308 110 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 IGKV1D-33P01593 117 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 IGKV1-33P01594 117 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 IGKV2D-28P01615 120 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 P0DMU3 169 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 FAM231AP0DMU4 169 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 FAM231CP0DMU5 169 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 RNASE2P10153 161 aaKnown RBP1.37□□□□□ -2.19
HMGB1-208ENST00000490788 COX7A1P24310 79 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 SUB1P53999 127 aaKnown RBP eCLIP1.37□□□□□ -2.19
HMGB1-208ENST00000490788 SYNJ2BPP57105 145 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 CACNG7P62955 275 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 RPS21P63220 83 aaKnown RBP1.37□□□□□ -2.19
HMGB1-208ENST00000490788 UBE2L3P68036 154 aaKnown RBP1.37□□□□□ -2.19
HMGB1-208ENST00000490788 HBG2P69892 147 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 CCL8P80075 99 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 SERF2P84101 59 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 RBM3P98179 157 aaKnown RBP1.37□□□□□ -2.19
HMGB1-208ENST00000490788 ERCC8Q13216 396 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 LGALS9BQ3B8N2 356 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 KPRPQ5T749 579 aaPredicted RBP1.37□□□□□ -2.19
HMGB1-208ENST00000490788 PVRIGQ6DKI7 326 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 ATP5L2Q7Z4Y8 100 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 WDR86Q86TI4 376 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 PRR15Q8IV56 129 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 C6orf223Q8N319 242 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 SERP2Q8N6R1 65 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 Q8N9W7 124 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 PFN4Q8NHR9 129 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 NT5CQ8TCD5 201 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 C7orf33Q8WU49 177 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 RNASE6Q93091 150 aaKnown RBP1.37□□□□□ -2.19
HMGB1-208ENST00000490788 FAM104AQ969W3 186 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 PGLYRP4Q96LB8 373 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 MGST2Q99735 147 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 NABP2Q9BQ15 211 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 PRSS27Q9BQR3 290 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 HDHD3Q9BSH5 251 aaPredicted RBP1.37□□□□□ -2.19
HMGB1-208ENST00000490788 TMEM243Q9BU79 118 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 TTTY13Q9BZ97 58 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 IMUPQ9GZP8 106 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 C11orf68Q9H3H3 251 aaKnown RBP1.37□□□□□ -2.19
HMGB1-208ENST00000490788 CALYQ9NYX4 217 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 LINC00474Q9P2X8 69 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 CRCT1Q9UGL9 99 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 ANAPC10Q9UM13 185 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 MUC2Q02817 5179 aa1.37□□□□□ -2.19
HMGB1-208ENST00000490788 CADP27708 2225 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 ARID1AO14497 2285 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 DMBT1Q9UGM3 2413 aaPredicted RBP1.36□□□□□ -2.19
HMGB1-208ENST00000490788 TRBV7-3A0A075B6L6 115 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 IGKV1D-8A0A087WSZ0 117 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 IGKV2D-26A0A0A0MRZ7 120 aa1.36□□□□□ -2.19
HMGB1-208ENST00000490788 TRBV7-1A0A0A6YYK4 115 aa1.36□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms