RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 RPL39LQ96EH5 51 aaKnown RBP11.75□□□□□ -0.53
UPF3A-203ENST00000474056 HLA-DQA1P01909 254 aa11.74□□□□□ -0.53
UPF3A-203ENST00000474056 COTL1Q14019 142 aa11.74□□□□□ -0.53
UPF3A-203ENST00000474056 FRZBQ92765 325 aa11.74□□□□□ -0.53
UPF3A-203ENST00000474056 OSTCQ9NRP0 149 aa11.74□□□□□ -0.53
UPF3A-203ENST00000474056 IGLV4-60A0A075B6I1 120 aa11.73□□□□□ -0.53
UPF3A-203ENST00000474056 Q6ZSA8 131 aa11.73□□□□□ -0.53
UPF3A-203ENST00000474056 TSKUQ8WUA8 353 aa11.73□□□□□ -0.53
UPF3A-203ENST00000474056 HIGD1CA8MV81 97 aa11.72□□□□□ -0.53
UPF3A-203ENST00000474056 C9JQL5 133 aa11.72□□□□□ -0.53
UPF3A-203ENST00000474056 AMTP48728 403 aa11.72□□□□□ -0.53
UPF3A-203ENST00000474056 REG3AQ06141 175 aa11.72□□□□□ -0.53
UPF3A-203ENST00000474056 KRTAP26-1Q6PEX3 210 aa11.72□□□□□ -0.53
UPF3A-203ENST00000474056 TEX261Q6UWH6 196 aa11.72□□□□□ -0.53
UPF3A-203ENST00000474056 GFRA4Q9GZZ7 299 aa11.72□□□□□ -0.53
UPF3A-203ENST00000474056 V9GYV3 84 aa11.72□□□□□ -0.53
UPF3A-203ENST00000474056 A0A1B0GUV1 79 aa11.71□□□□□ -0.53
UPF3A-203ENST00000474056 USP17L23D6RBM5 183 aa11.71□□□□□ -0.53
UPF3A-203ENST00000474056 SRSF3P84103 164 aaKnown RBP11.71□□□□□ -0.53
UPF3A-203ENST00000474056 C14orf177Q52M58 125 aa11.71□□□□□ -0.53
UPF3A-203ENST00000474056 ISOC2Q96AB3 205 aa11.71□□□□□ -0.53
UPF3A-203ENST00000474056 BORCS7Q96B45 105 aa11.71□□□□□ -0.53
UPF3A-203ENST00000474056 IGLV10-54A0A075B6I4 117 aa11.7□□□□□ -0.54
UPF3A-203ENST00000474056 A0A1B0GUT8 65 aa11.7□□□□□ -0.54
UPF3A-203ENST00000474056 UBE2L6O14933 153 aa11.7□□□□□ -0.54
UPF3A-203ENST00000474056 RPL23P62829 140 aaKnown RBP11.7□□□□□ -0.54
UPF3A-203ENST00000474056 FAM231BA6NCW3 169 aa11.69□□□□□ -0.54
UPF3A-203ENST00000474056 SDHAF1A6NFY7 115 aa11.69□□□□□ -0.54
UPF3A-203ENST00000474056 GAS8-AS1O95177 125 aa11.69□□□□□ -0.54
UPF3A-203ENST00000474056 TMEM241Q24JQ0 296 aa11.69□□□□□ -0.54
UPF3A-203ENST00000474056 FAM74A3Q4VXF1 159 aa11.68□□□□□ -0.54
UPF3A-203ENST00000474056 RNF185Q96GF1 192 aa11.68□□□□□ -0.54
UPF3A-203ENST00000474056 TMEM191AQ9H0A3 160 aa11.68□□□□□ -0.54
UPF3A-203ENST00000474056 ADIRFQ15847 76 aa11.67□□□□□ -0.54
UPF3A-203ENST00000474056 NUP35Q8NFH5 326 aa11.67□□□□□ -0.54
UPF3A-203ENST00000474056 NAT8Q9UHE5 227 aa11.67□□□□□ -0.54
UPF3A-203ENST00000474056 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.66□□□□□ -0.54
UPF3A-203ENST00000474056 IGKV2-29A2NJV5 120 aaPredicted RBP11.66□□□□□ -0.54
UPF3A-203ENST00000474056 NCR2O95944 276 aa11.66□□□□□ -0.54
UPF3A-203ENST00000474056 APCSP02743 223 aa11.66□□□□□ -0.54
UPF3A-203ENST00000474056 PRSS1P07477 247 aa11.66□□□□□ -0.54
UPF3A-203ENST00000474056 INAFM2P0DMQ5 153 aa11.66□□□□□ -0.54
UPF3A-203ENST00000474056 PEA15Q15121 130 aa11.66□□□□□ -0.54
UPF3A-203ENST00000474056 AMN1Q8IY45 258 aa11.66□□□□□ -0.54
UPF3A-203ENST00000474056 TRAV8-4A0A0B4J246 113 aa11.65□□□□□ -0.54
UPF3A-203ENST00000474056 TRBV6-5A0A0K0K1A5 114 aa11.65□□□□□ -0.54
UPF3A-203ENST00000474056 FAM229AH3BQW9 127 aa11.65□□□□□ -0.54
UPF3A-203ENST00000474056 RAB4AP20338 218 aa11.65□□□□□ -0.54
UPF3A-203ENST00000474056 RPS10P46783 165 aaKnown RBP11.64□□□□□ -0.55
UPF3A-203ENST00000474056 SCXQ7RTU7 201 aa11.64□□□□□ -0.55
UPF3A-203ENST00000474056 FLG2Q5D862 2391 aaPredicted RBP11.64□□□□□ -0.55
UPF3A-203ENST00000474056 I3L3M4 83 aa11.63□□□□□ -0.55
UPF3A-203ENST00000474056 PMCHP20382 165 aa11.63□□□□□ -0.55
UPF3A-203ENST00000474056 RIGQ13278 110 aa11.63□□□□□ -0.55
UPF3A-203ENST00000474056 SMDT1Q9H4I9 107 aa11.63□□□□□ -0.55
UPF3A-203ENST00000474056 ST20Q9HBF5 79 aa11.63□□□□□ -0.55
UPF3A-203ENST00000474056 NAT8BQ9UHF3 227 aa11.63□□□□□ -0.55
UPF3A-203ENST00000474056 IGKV3OR2-268A0A0C4DH90 116 aa11.62□□□□□ -0.55
UPF3A-203ENST00000474056 SMKR1H3BMG3 65 aa11.62□□□□□ -0.55
UPF3A-203ENST00000474056 AMMECR1LQ6DCA0 310 aa11.62□□□□□ -0.55
UPF3A-203ENST00000474056 RNASEKQ6P5S7 137 aaKnown RBP11.62□□□□□ -0.55
UPF3A-203ENST00000474056 MRAP2Q96G30 205 aa11.62□□□□□ -0.55
UPF3A-203ENST00000474056 TMEM242Q9NWH2 141 aa11.62□□□□□ -0.55
UPF3A-203ENST00000474056 H7C423 109 aa11.61□□□□□ -0.55
UPF3A-203ENST00000474056 TSHBP01222 138 aa11.61□□□□□ -0.55
UPF3A-203ENST00000474056 FGF6P10767 208 aa11.61□□□□□ -0.55
UPF3A-203ENST00000474056 POLR2KP53803 58 aaKnown RBP11.61□□□□□ -0.55
UPF3A-203ENST00000474056 SMIM27A0A1W2PRY6 76 aa11.6□□□□□ -0.55
UPF3A-203ENST00000474056 LINC00528Q8N1L1 170 aa11.6□□□□□ -0.55
UPF3A-203ENST00000474056 CHAC1Q9BUX1 264 aa11.6□□□□□ -0.55
UPF3A-203ENST00000474056 MYCBP2O75592 4640 aa11.6□□□□□ -0.55
UPF3A-203ENST00000474056 ESDP10768 282 aa11.59□□□□□ -0.55
UPF3A-203ENST00000474056 DGAT2L7PQ6IED9 249 aa11.59□□□□□ -0.55
UPF3A-203ENST00000474056 C9orf163Q8N9P6 203 aa11.59□□□□□ -0.55
UPF3A-203ENST00000474056 CLRN3Q8NCR9 226 aa11.59□□□□□ -0.55
UPF3A-203ENST00000474056 CIRBP-AS1Q8TBR5 109 aa11.59□□□□□ -0.55
UPF3A-203ENST00000474056 TRBV27A0A0K0K1C4 114 aa11.58□□□□□ -0.56
UPF3A-203ENST00000474056 hDV102S1A0JD36 115 aa11.58□□□□□ -0.56
UPF3A-203ENST00000474056 GAGE12HA6NDE8 117 aa11.58□□□□□ -0.56
UPF3A-203ENST00000474056 ZNF25P17030 456 aaPredicted RBP11.57□□□□□ -0.56
UPF3A-203ENST00000474056 NRACQ8N912 160 aa11.57□□□□□ -0.56
UPF3A-203ENST00000474056 SRRM2Q9UQ35 2752 aaKnown RBP11.57□□□□□ -0.56
UPF3A-203ENST00000474056 CAMPP49913 170 aa11.56□□□□□ -0.56
UPF3A-203ENST00000474056 MRPL51Q4U2R6 128 aaKnown RBP11.56□□□□□ -0.56
UPF3A-203ENST00000474056 FAM104BQ5XKR9 115 aa11.56□□□□□ -0.56
UPF3A-203ENST00000474056 CHCHD10Q8WYQ3 142 aaPredicted RBP11.56□□□□□ -0.56
UPF3A-203ENST00000474056 CNBPP62633 177 aaKnown RBP11.55□□□□□ -0.56
UPF3A-203ENST00000474056 MRPL54Q6P161 138 aaKnown RBP11.55□□□□□ -0.56
UPF3A-203ENST00000474056 C15orf56Q8N910 161 aa11.55□□□□□ -0.56
UPF3A-203ENST00000474056 BTF3L4Q96K17 158 aa11.55□□□□□ -0.56
UPF3A-203ENST00000474056 C7orf77A4D0Y5 90 aa11.54□□□□□ -0.56
UPF3A-203ENST00000474056 SLPIP03973 132 aa11.54□□□□□ -0.56
UPF3A-203ENST00000474056 PLA2G1BP04054 148 aaKnown RBP11.54□□□□□ -0.56
UPF3A-203ENST00000474056 SUMO2P61956 95 aaKnown RBP11.54□□□□□ -0.56
UPF3A-203ENST00000474056 OR5A1Q8NGJ0 315 aa11.54□□□□□ -0.56
UPF3A-203ENST00000474056 TMEM101Q96IK0 257 aa11.54□□□□□ -0.56
UPF3A-203ENST00000474056 HERC1Q15751 4861 aa11.53□□□□□ -0.56
UPF3A-203ENST00000474056 A0A1B0GW15 77 aa11.53□□□□□ -0.56
UPF3A-203ENST00000474056 PANO1I0J062 215 aa11.53□□□□□ -0.56
UPF3A-203ENST00000474056 VCYO14598 125 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 97.1 ms