RNA–Protein interactions for RNA: ENST00000473295.2

SCN1A-205, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 544 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-205ENST00000473295 FAM9CQ8IZT9 166 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 SPTSSBQ8NFR3 76 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 MCFD2Q8NI22 146 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 MYOZ3Q8TDC0 251 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 GNPDA2Q8TDQ7 276 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 DPH3Q96FX2 82 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 CFAP53Q96M91 514 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 LINC01600Q96MT4 127 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 LINC00467Q9BRT7 94 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 SLC35B3Q9H1N7 401 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 NMNAT1Q9HAN9 279 aaPredicted RBP-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 ENY2Q9NPA8 101 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 CDC42SE2Q9NRR3 84 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 NHP2Q9NX24 153 aaKnown RBP-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 METTL1Q9UBP6 276 aaKnown RBP-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 STOML2Q9UJZ1 356 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 V9GYV3 84 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 PHLPP1O60346 1717 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 ARHGEF12Q9NZN5 1544 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 KIAA0100Q14667 2235 aaKnown RBP-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 NBEAQ8NFP9 2946 aa-0.65□□□□□ -2.51
SCN1A-205ENST00000473295 FOCADQ5VW36 1801 aa-0.66□□□□□ -2.51
SCN1A-205ENST00000473295 PATJQ8NI35 1801 aa-0.66□□□□□ -2.51
SCN1A-205ENST00000473295 C1orf167Q5SNV9 1468 aa-0.66□□□□□ -2.51
SCN1A-205ENST00000473295 NRXN1Q9ULB1 1477 aa-0.66□□□□□ -2.51
SCN1A-205ENST00000473295 GCN1Q92616 2671 aaKnown RBP-0.66□□□□□ -2.51
SCN1A-205ENST00000473295 TRAV12-2A0A075B6T6 113 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 A0A0D9SFI3 127 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 TCRBV3S1A0A5B6 114 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 ARL5CA6NH57 179 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 RIIAD1A6NNX1 92 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 APOC4-APOC2K7ER74 178 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 HMGN4O00479 90 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 UQCRQO14949 82 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 GGCTO75223 188 aaKnown RBP-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 DCTN3O75935 186 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 NCR2O95944 276 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 APODP05090 189 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 IGLC1P0CG04 106 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 SAA1P0DJI8 122 aaPredicted RBP-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 HLA-DRB4P13762 266 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 SDC2P34741 201 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 ANP32AP39687 249 aaKnown RBP-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 PPP1R2P41236 205 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 ASIPP42127 132 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 FXYD6P3P58550 94 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 MRPS36P82909 103 aaKnown RBP-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 HIST1H1AQ02539 215 aaPredicted RBP-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 TMED2Q15363 201 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 PPP1R2P3Q6NXS1 205 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 DCUN1D2Q6PH85 259 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 SFTA2Q6UW10 78 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 SNX29P2Q8IUI4 249 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 TRAPPC5Q8IUR0 188 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 MNS1Q8NEH6 495 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 OR4B1Q8NGF8 309 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 DYNLRB2Q8TF09 96 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 PPP1R1CQ8WVI7 109 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 PPDPFLQ8WWR9 84 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 BORCS7Q96B45 105 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 DCUN1D1Q96GG9 259 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 ATP6V1G3Q96LB4 118 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 CCDC42Q96M95 316 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 DCUN1D5Q9BTE7 237 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 CCDC90BQ9GZT6 254 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 FXYD6Q9H0Q3 95 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 FGFR1OP2Q9NVK5 253 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 NKIRAS1Q9NYS0 192 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 USE1Q9NZ43 259 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 HIGD1AQ9Y241 93 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 FAM32AQ9Y421 112 aaKnown RBP-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 HLA-DRB4X5D2U9 266 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 MYO15AQ9UKN7 3530 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 MYOM1P52179 1685 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 PSME4Q14997 1843 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 PARP14Q460N5 1801 aa-0.66□□□□□ -2.52
SCN1A-205ENST00000473295 NCAPD3P42695 1498 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 TOPAZ1Q8N9V7 1692 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 TRBV20-1A0A075B6N2 111 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 RBAKDNA6NC62 111 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 H7C1C5 153 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 CETN3O15182 167 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 SSNA1O43805 119 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 SIX6O95475 246 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 PPP1R17O96001 155 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 TPT1P13693 172 aaKnown RBP-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 UCHL3P15374 230 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 MYL12AP19105 171 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 CKS2P33552 79 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 POLR2JP52435 117 aaKnown RBP-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 AP3S2P59780 193 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 DNAJB13P59910 316 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 PCBD1P61457 104 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 VBP1P61758 197 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 BCL2L15Q5TBC7 163 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 SLC48A1Q6P1K1 146 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 CYP2G1PQ6ZSU1 146 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 Q6ZUT4 128 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 SLC51BQ86UW2 128 aa-0.67□□□□□ -2.52
SCN1A-205ENST00000473295 BAGE3Q86Y29 109 aa-0.67□□□□□ -2.52
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms