RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 GATD1Q8NB37 220 aa10.76□□□□□ -0.69
USP40-212ENST00000473191 RPP21Q9H633 154 aaKnown RBP10.76□□□□□ -0.69
USP40-212ENST00000473191 NIT2Q9NQR4 276 aa10.76□□□□□ -0.69
USP40-212ENST00000473191 PKHD1L1Q86WI1 4243 aa10.75□□□□□ -0.69
USP40-212ENST00000473191 PKIAP61925 76 aa10.75□□□□□ -0.69
USP40-212ENST00000473191 C14orf177Q52M58 125 aa10.75□□□□□ -0.69
USP40-212ENST00000473191 TMEM243Q9BU79 118 aa10.75□□□□□ -0.69
USP40-212ENST00000473191 CNFNQ9BYD5 112 aa10.75□□□□□ -0.69
USP40-212ENST00000473191 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.75□□□□□ -0.69
USP40-212ENST00000473191 FAT3Q8TDW7 4589 aa10.75□□□□□ -0.69
USP40-212ENST00000473191 RPL39LQ96EH5 51 aaKnown RBP10.74□□□□□ -0.69
USP40-212ENST00000473191 DMBT1Q9UGM3 2413 aaPredicted RBP10.74□□□□□ -0.69
USP40-212ENST00000473191 SLPIP03973 132 aa10.73□□□□□ -0.69
USP40-212ENST00000473191 BLOC1S1P78537 153 aa10.73□□□□□ -0.69
USP40-212ENST00000473191 PGLYRP4Q96LB8 373 aa10.73□□□□□ -0.69
USP40-212ENST00000473191 BIN3Q9NQY0 253 aa10.73□□□□□ -0.69
USP40-212ENST00000473191 A0A1B0GUV1 79 aa10.72□□□□□ -0.69
USP40-212ENST00000473191 GAS8-AS1O95177 125 aa10.72□□□□□ -0.69
USP40-212ENST00000473191 WDR73Q6P4I2 378 aa10.72□□□□□ -0.69
USP40-212ENST00000473191 C9orf163Q8N9P6 203 aa10.72□□□□□ -0.69
USP40-212ENST00000473191 LYPD6BQ8NI32 183 aa10.72□□□□□ -0.69
USP40-212ENST00000473191 J3QL48 77 aa10.71□□□□□ -0.69
USP40-212ENST00000473191 TAGLN2P37802 199 aaKnown RBP10.71□□□□□ -0.69
USP40-212ENST00000473191 CEBPGP53567 150 aa10.71□□□□□ -0.69
USP40-212ENST00000473191 CLLU1Q5K131 121 aa10.71□□□□□ -0.69
USP40-212ENST00000473191 AMTP48728 403 aa10.7□□□□□ -0.7
USP40-212ENST00000473191 HNRNPA3P51991 378 aaKnown RBP10.7□□□□□ -0.7
USP40-212ENST00000473191 KRTAP29-1A8MX34 341 aaPredicted RBP10.69□□□□□ -0.7
USP40-212ENST00000473191 COTL1Q14019 142 aa10.69□□□□□ -0.7
USP40-212ENST00000473191 DGAT2L7PQ6IED9 249 aa10.69□□□□□ -0.7
USP40-212ENST00000473191 SDIM1Q6ZPB5 146 aa10.69□□□□□ -0.7
USP40-212ENST00000473191 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.68□□□□□ -0.7
USP40-212ENST00000473191 IGKV3OR2-268A0A0C4DH90 116 aa10.68□□□□□ -0.7
USP40-212ENST00000473191 IGKV2-29A2NJV5 120 aaPredicted RBP10.68□□□□□ -0.7
USP40-212ENST00000473191 TMEM250H0YL14 139 aa10.68□□□□□ -0.7
USP40-212ENST00000473191 GATCO43716 136 aaKnown RBP10.68□□□□□ -0.7
USP40-212ENST00000473191 TRAV8-4A0A0B4J246 113 aa10.67□□□□□ -0.7
USP40-212ENST00000473191 hDV102S1A0JD36 115 aa10.67□□□□□ -0.7
USP40-212ENST00000473191 UBE2L6O14933 153 aa10.67□□□□□ -0.7
USP40-212ENST00000473191 CHTF8P0CG12 524 aa10.66□□□□□ -0.7
USP40-212ENST00000473191 FAM231DQ6ZW35 169 aa10.66□□□□□ -0.7
USP40-212ENST00000473191 C15orf56Q8N910 161 aa10.66□□□□□ -0.7
USP40-212ENST00000473191 FAM231BA6NCW3 169 aa10.65□□□□□ -0.7
USP40-212ENST00000473191 GAGE12HA6NDE8 117 aa10.65□□□□□ -0.7
USP40-212ENST00000473191 CLRN3Q8NCR9 226 aa10.65□□□□□ -0.7
USP40-212ENST00000473191 SDHAF1A6NFY7 115 aa10.64□□□□□ -0.71
USP40-212ENST00000473191 RPL37AP61513 92 aaKnown RBP10.64□□□□□ -0.71
USP40-212ENST00000473191 CNBPP62633 177 aaKnown RBP10.64□□□□□ -0.71
USP40-212ENST00000473191 LINC01551Q86U37 167 aa10.64□□□□□ -0.71
USP40-212ENST00000473191 A8MWL6 223 aa10.63□□□□□ -0.71
USP40-212ENST00000473191 SRP19P09132 144 aaKnown RBP10.63□□□□□ -0.71
USP40-212ENST00000473191 RPS10P46783 165 aaKnown RBP10.63□□□□□ -0.71
USP40-212ENST00000473191 NDUFA5Q16718 116 aa10.63□□□□□ -0.71
USP40-212ENST00000473191 RNF185Q96GF1 192 aa10.63□□□□□ -0.71
USP40-212ENST00000473191 SMIM7Q9BQ49 75 aa10.63□□□□□ -0.71
USP40-212ENST00000473191 EIF5A2Q9GZV4 153 aaKnown RBP10.63□□□□□ -0.71
USP40-212ENST00000473191 APCSP02743 223 aa10.62□□□□□ -0.71
USP40-212ENST00000473191 FGF6P10767 208 aa10.62□□□□□ -0.71
USP40-212ENST00000473191 HIGD2BQ4VC39 106 aa10.62□□□□□ -0.71
USP40-212ENST00000473191 RNASEKQ6P5S7 137 aaKnown RBP10.62□□□□□ -0.71
USP40-212ENST00000473191 FAM210AQ96ND0 272 aa10.62□□□□□ -0.71
USP40-212ENST00000473191 HIGD1CA8MV81 97 aa10.61□□□□□ -0.71
USP40-212ENST00000473191 CIRBPQ14011 172 aaKnown RBP10.61□□□□□ -0.71
USP40-212ENST00000473191 CT83Q5H943 113 aa10.61□□□□□ -0.71
USP40-212ENST00000473191 SMIM15Q7Z3B0 74 aa10.61□□□□□ -0.71
USP40-212ENST00000473191 COMMD7Q86VX2 200 aa10.61□□□□□ -0.71
USP40-212ENST00000473191 CHCHD10Q8WYQ3 142 aaPredicted RBP10.61□□□□□ -0.71
USP40-212ENST00000473191 LINC00862A6NCI5 91 aa10.6□□□□□ -0.71
USP40-212ENST00000473191 ZNF727A8MUV8 499 aa10.6□□□□□ -0.71
USP40-212ENST00000473191 C9JQL5 133 aa10.6□□□□□ -0.71
USP40-212ENST00000473191 NCR2O95944 276 aa10.6□□□□□ -0.71
USP40-212ENST00000473191 TSHBP01222 138 aa10.6□□□□□ -0.71
USP40-212ENST00000473191 AMMECR1LQ6DCA0 310 aa10.6□□□□□ -0.71
USP40-212ENST00000473191 AMN1Q8IY45 258 aa10.6□□□□□ -0.71
USP40-212ENST00000473191 TSKUQ8WUA8 353 aa10.6□□□□□ -0.71
USP40-212ENST00000473191 TMEM242Q9NWH2 141 aa10.6□□□□□ -0.71
USP40-212ENST00000473191 TRBV6-5A0A0K0K1A5 114 aa10.59□□□□□ -0.71
USP40-212ENST00000473191 SMKR1H3BMG3 65 aa10.59□□□□□ -0.71
USP40-212ENST00000473191 I3L3M4 83 aa10.59□□□□□ -0.71
USP40-212ENST00000473191 ESDP10768 282 aa10.59□□□□□ -0.71
USP40-212ENST00000473191 RAB4AP20338 218 aa10.59□□□□□ -0.71
USP40-212ENST00000473191 PMCHP20382 165 aa10.59□□□□□ -0.71
USP40-212ENST00000473191 V9GYV3 84 aa10.59□□□□□ -0.71
USP40-212ENST00000473191 IGHV3-64A0A075B6Q5 118 aa10.58□□□□□ -0.72
USP40-212ENST00000473191 A0A087WYN8 130 aa10.58□□□□□ -0.72
USP40-212ENST00000473191 FOXI1Q12951 378 aa10.58□□□□□ -0.72
USP40-212ENST00000473191 TMEM191AQ9H0A3 160 aa10.58□□□□□ -0.72
USP40-212ENST00000473191 OSTCQ9NRP0 149 aa10.58□□□□□ -0.72
USP40-212ENST00000473191 AP5S1Q9NUS5 200 aa10.58□□□□□ -0.72
USP40-212ENST00000473191 HMCN2Q8NDA2 5059 aa10.58□□□□□ -0.72
USP40-212ENST00000473191 A0A1B0GUT8 65 aa10.57□□□□□ -0.72
USP40-212ENST00000473191 POLR2KP53803 58 aaKnown RBP10.57□□□□□ -0.72
USP40-212ENST00000473191 SRSF3P84103 164 aaKnown RBP10.57□□□□□ -0.72
USP40-212ENST00000473191 COX6A2Q02221 97 aa10.57□□□□□ -0.72
USP40-212ENST00000473191 NUP35Q8NFH5 326 aa10.57□□□□□ -0.72
USP40-212ENST00000473191 PRSS3P2Q8NHM4 247 aa10.57□□□□□ -0.72
USP40-212ENST00000473191 SPACA4Q8TDM5 124 aa10.57□□□□□ -0.72
USP40-212ENST00000473191 LINC00526Q96FQ7 95 aa10.57□□□□□ -0.72
USP40-212ENST00000473191 H7C423 109 aa10.56□□□□□ -0.72
USP40-212ENST00000473191 PEA15Q15121 130 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 110.7 ms