RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 DOPEY1Q5JWR5 2465 aa3.98□□□□□ -1.77
SYNE1-220ENST00000471834 PRRC2CQ9Y520 2896 aaKnown RBP3.98□□□□□ -1.77
SYNE1-220ENST00000471834 TRIOO75962 3097 aa3.98□□□□□ -1.77
SYNE1-220ENST00000471834 MT-ATP8P03928 68 aa3.98□□□□□ -1.77
SYNE1-220ENST00000471834 LYPD5Q6UWN5 251 aa3.98□□□□□ -1.77
SYNE1-220ENST00000471834 GNRH2O43555 120 aa3.98□□□□□ -1.77
SYNE1-220ENST00000471834 SIRPDQ9H106 197 aa3.98□□□□□ -1.77
SYNE1-220ENST00000471834 REV3LO60673 3130 aa3.98□□□□□ -1.77
SYNE1-220ENST00000471834 IGKV2D-29A0A075B6S2 120 aaPredicted RBP3.98□□□□□ -1.77
SYNE1-220ENST00000471834 IGKV2-29A2NJV5 120 aaPredicted RBP3.98□□□□□ -1.77
SYNE1-220ENST00000471834 CXCL5P42830 114 aa3.98□□□□□ -1.77
SYNE1-220ENST00000471834 C20orf203Q8NBC4 194 aa3.98□□□□□ -1.77
SYNE1-220ENST00000471834 F6UB75 175 aa3.98□□□□□ -1.77
SYNE1-220ENST00000471834 NDUFS5O43920 106 aa3.98□□□□□ -1.77
SYNE1-220ENST00000471834 DEFB136Q30KP8 78 aa3.98□□□□□ -1.77
SYNE1-220ENST00000471834 LST1O00453 97 aa3.97□□□□□ -1.77
SYNE1-220ENST00000471834 TSPEAR-AS2P59090 65 aa3.97□□□□□ -1.77
SYNE1-220ENST00000471834 MRPS36P82909 103 aaKnown RBP3.97□□□□□ -1.77
SYNE1-220ENST00000471834 RPL18AQ02543 176 aaKnown RBP3.97□□□□□ -1.77
SYNE1-220ENST00000471834 RBMY1FQ15415 496 aaKnown RBP3.97□□□□□ -1.77
SYNE1-220ENST00000471834 C14orf177Q52M58 125 aa3.97□□□□□ -1.77
SYNE1-220ENST00000471834 PRIMA1Q86XR5 153 aa3.97□□□□□ -1.77
SYNE1-220ENST00000471834 K7EMT4 169 aa3.97□□□□□ -1.77
SYNE1-220ENST00000471834 PRB2P02812 416 aaPredicted RBP3.97□□□□□ -1.77
SYNE1-220ENST00000471834 IGKV2D-24A0A075B6R9 120 aa3.97□□□□□ -1.77
SYNE1-220ENST00000471834 TMEM89A2RUT3 159 aa3.97□□□□□ -1.77
SYNE1-220ENST00000471834 LINC01620Q4KN68 170 aa3.97□□□□□ -1.77
SYNE1-220ENST00000471834 ARFGEF3Q5TH69 2177 aa3.97□□□□□ -1.77
SYNE1-220ENST00000471834 COL6A6A6NMZ7 2263 aa3.97□□□□□ -1.77
SYNE1-220ENST00000471834 DOCK7Q96N67 2140 aa3.97□□□□□ -1.77
SYNE1-220ENST00000471834 C1orf43Q9BWL3 253 aa3.97□□□□□ -1.77
SYNE1-220ENST00000471834 NOP10Q9NPE3 64 aaKnown RBP3.97□□□□□ -1.77
SYNE1-220ENST00000471834 PRAC2D3DTV9 90 aa3.97□□□□□ -1.77
SYNE1-220ENST00000471834 CFC1BP0CG36 223 aa3.97□□□□□ -1.77
SYNE1-220ENST00000471834 CFC1P0CG37 223 aa3.97□□□□□ -1.77
SYNE1-220ENST00000471834 PRR9Q5T870 116 aa3.97□□□□□ -1.77
SYNE1-220ENST00000471834 Q8N9W7 124 aa3.97□□□□□ -1.77
SYNE1-220ENST00000471834 DAZ1Q9NQZ3 744 aaKnown RBP3.97□□□□□ -1.77
SYNE1-220ENST00000471834 CRYGAP11844 174 aa3.97□□□□□ -1.77
SYNE1-220ENST00000471834 DOPEY2Q9Y3R5 2298 aa3.96□□□□□ -1.77
SYNE1-220ENST00000471834 TINCRA0A1B0GVN0 87 aa3.96□□□□□ -1.77
SYNE1-220ENST00000471834 Q8NA96 180 aa3.96□□□□□ -1.77
SYNE1-220ENST00000471834 Q9HAA7 133 aa3.96□□□□□ -1.77
SYNE1-220ENST00000471834 PIEZO2Q9H5I5 2752 aa3.96□□□□□ -1.78
SYNE1-220ENST00000471834 MED13Q9UHV7 2174 aa3.96□□□□□ -1.78
SYNE1-220ENST00000471834 TRBV10-2A0A0K0K1G8 114 aa3.96□□□□□ -1.78
SYNE1-220ENST00000471834 BCE1O60756 84 aa3.96□□□□□ -1.78
SYNE1-220ENST00000471834 ACYP1P07311 99 aa3.96□□□□□ -1.78
SYNE1-220ENST00000471834 NKAPP1Q8N9T2 125 aa3.96□□□□□ -1.78
SYNE1-220ENST00000471834 BAALCQ8WXS3 180 aa3.96□□□□□ -1.78
SYNE1-220ENST00000471834 TMEM126AQ9H061 195 aa3.96□□□□□ -1.78
SYNE1-220ENST00000471834 NCR3O14931 201 aa3.96□□□□□ -1.78
SYNE1-220ENST00000471834 TCL1BO95988 128 aa3.96□□□□□ -1.78
SYNE1-220ENST00000471834 KIR2DL5BQ8NHK3 375 aa3.96□□□□□ -1.78
SYNE1-220ENST00000471834 PRO1854Q9UHT4 67 aa3.96□□□□□ -1.78
SYNE1-220ENST00000471834 UBE2D4Q9Y2X8 147 aa3.96□□□□□ -1.78
SYNE1-220ENST00000471834 LINC01548A6NM66 108 aa3.96□□□□□ -1.78
SYNE1-220ENST00000471834 OVOL2Q9BRP0 275 aa3.96□□□□□ -1.78
SYNE1-220ENST00000471834 PTPRQQ9UMZ3 2332 aa3.96□□□□□ -1.78
SYNE1-220ENST00000471834 SVILO95425 2214 aa3.96□□□□□ -1.78
SYNE1-220ENST00000471834 SLURP1P55000 103 aa3.96□□□□□ -1.78
SYNE1-220ENST00000471834 NDUFV3P56181 108 aaKnown RBP3.96□□□□□ -1.78
SYNE1-220ENST00000471834 C2orf48Q96LS8 159 aa3.96□□□□□ -1.78
SYNE1-220ENST00000471834 DSCR8Q96T75 97 aa3.96□□□□□ -1.78
SYNE1-220ENST00000471834 NDUFC2O95298 119 aa3.95□□□□□ -1.78
SYNE1-220ENST00000471834 SPART-AS1P0CW21 52 aa3.95□□□□□ -1.78
SYNE1-220ENST00000471834 HIST2H2BCQ6DN03 193 aa3.95□□□□□ -1.78
SYNE1-220ENST00000471834 XCL1P47992 114 aa3.95□□□□□ -1.78
SYNE1-220ENST00000471834 C9orf153Q5TBE3 101 aa3.95□□□□□ -1.78
SYNE1-220ENST00000471834 GRNP28799 593 aaKnown RBP3.95□□□□□ -1.78
SYNE1-220ENST00000471834 SMIM20Q8N5G0 67 aa3.95□□□□□ -1.78
SYNE1-220ENST00000471834 RPL39LQ96EH5 51 aaKnown RBP3.95□□□□□ -1.78
SYNE1-220ENST00000471834 CSDC2Q9Y534 153 aaKnown RBP3.95□□□□□ -1.78
SYNE1-220ENST00000471834 CCL24O00175 119 aa3.95□□□□□ -1.78
SYNE1-220ENST00000471834 UBE2E1P51965 193 aa3.95□□□□□ -1.78
SYNE1-220ENST00000471834 TMEM61Q8N0U2 210 aa3.95□□□□□ -1.78
SYNE1-220ENST00000471834 Q8N1Y9 231 aa3.95□□□□□ -1.78
SYNE1-220ENST00000471834 LINC00526Q96FQ7 95 aa3.95□□□□□ -1.78
SYNE1-220ENST00000471834 ORMDL1Q9P0S3 153 aa3.95□□□□□ -1.78
SYNE1-220ENST00000471834 VPREB3Q9UKI3 123 aa3.95□□□□□ -1.78
SYNE1-220ENST00000471834 TRACP01848 142 aa3.95□□□□□ -1.78
SYNE1-220ENST00000471834 IGHG2P01859 326 aa3.95□□□□□ -1.78
SYNE1-220ENST00000471834 C11orf45Q8TAV5 145 aa3.95□□□□□ -1.78
SYNE1-220ENST00000471834 SS18L2Q9UHA2 77 aa3.95□□□□□ -1.78
SYNE1-220ENST00000471834 ROS1P08922 2347 aa3.95□□□□□ -1.78
SYNE1-220ENST00000471834 IGHV1OR15-1A0A075B7D0 117 aa3.94□□□□□ -1.78
SYNE1-220ENST00000471834 hADV29S1A0JD25 119 aa3.94□□□□□ -1.78
SYNE1-220ENST00000471834 HCFC1P51610 2035 aa3.94□□□□□ -1.78
SYNE1-220ENST00000471834 IGLV1-40P01703 118 aa3.94□□□□□ -1.78
SYNE1-220ENST00000471834 GATA1P15976 413 aaPredicted RBP3.94□□□□□ -1.78
SYNE1-220ENST00000471834 C5orf47Q569G3 176 aa3.94□□□□□ -1.78
SYNE1-220ENST00000471834 TMEM243Q9BU79 118 aa3.94□□□□□ -1.78
SYNE1-220ENST00000471834 TIRAPP58753 221 aa3.94□□□□□ -1.78
SYNE1-220ENST00000471834 HIST2H2BDQ6DRA6 164 aa3.94□□□□□ -1.78
SYNE1-220ENST00000471834 LAMA2P24043 3122 aaKnown RBP3.94□□□□□ -1.78
SYNE1-220ENST00000471834 TRAV4A0A0B4J268 109 aa3.94□□□□□ -1.78
SYNE1-220ENST00000471834 ANGP03950 147 aaKnown RBP3.94□□□□□ -1.78
SYNE1-220ENST00000471834 NRGNQ92686 78 aa3.94□□□□□ -1.78
SYNE1-220ENST00000471834 DNAJC30Q96LL9 226 aa3.94□□□□□ -1.78
SYNE1-220ENST00000471834 IGHV4-28A0A0C4DH34 117 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms