RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 HMCN2Q8NDA2 5059 aa15.68■□□□□ 0.1
PTCH1-210ENST00000468211 SLPIP03973 132 aa15.67■□□□□ 0.1
PTCH1-210ENST00000468211 CLRN3Q8NCR9 226 aa15.67■□□□□ 0.1
PTCH1-210ENST00000468211 TRAV8-4A0A0B4J246 113 aa15.66■□□□□ 0.1
PTCH1-210ENST00000468211 hDV102S1A0JD36 115 aa15.66■□□□□ 0.1
PTCH1-210ENST00000468211 WDR73Q6P4I2 378 aa15.66■□□□□ 0.1
PTCH1-210ENST00000468211 K7EN84 100 aa15.65■□□□□ 0.1
PTCH1-210ENST00000468211 CNBPP62633 177 aaKnown RBP15.65■□□□□ 0.1
PTCH1-210ENST00000468211 GATD1Q8NB37 220 aa15.65■□□□□ 0.1
PTCH1-210ENST00000468211 CNFNQ9BYD5 112 aa15.65■□□□□ 0.1
PTCH1-210ENST00000468211 RNASE7Q9H1E1 156 aaKnown RBP15.65■□□□□ 0.1
PTCH1-210ENST00000468211 BIN3Q9NQY0 253 aa15.65■□□□□ 0.1
PTCH1-210ENST00000468211 TRAV26-2A0A0B4J265 109 aa15.64■□□□□ 0.09
PTCH1-210ENST00000468211 AMTP48728 403 aa15.64■□□□□ 0.09
PTCH1-210ENST00000468211 TWIST1Q15672 202 aa15.64■□□□□ 0.09
PTCH1-210ENST00000468211 TCTE3Q8IZS6 198 aa15.64■□□□□ 0.09
PTCH1-210ENST00000468211 COTL1Q14019 142 aa15.63■□□□□ 0.09
PTCH1-210ENST00000468211 OCC1Q8TAD7 63 aa15.63■□□□□ 0.09
PTCH1-210ENST00000468211 CIRBPQ14011 172 aaKnown RBP15.62■□□□□ 0.09
PTCH1-210ENST00000468211 SLC51BQ86UW2 128 aa15.62■□□□□ 0.09
PTCH1-210ENST00000468211 RPP21Q9H633 154 aaKnown RBP15.62■□□□□ 0.09
PTCH1-210ENST00000468211 UBE2L6O14933 153 aa15.61■□□□□ 0.09
PTCH1-210ENST00000468211 FOXA3P55318 350 aaPredicted RBP15.61■□□□□ 0.09
PTCH1-210ENST00000468211 GTSF1Q8WW33 167 aa15.61■□□□□ 0.09
PTCH1-210ENST00000468211 CHTF8P0CG12 524 aa15.6■□□□□ 0.09
PTCH1-210ENST00000468211 SERTAD4-AS1Q5TG53 156 aa15.6■□□□□ 0.09
PTCH1-210ENST00000468211 RPL39LQ96EH5 51 aaKnown RBP15.6■□□□□ 0.09
PTCH1-210ENST00000468211 C15orf56Q8N910 161 aa15.59■□□□□ 0.09
PTCH1-210ENST00000468211 Q6ZNX1 250 aa15.58■□□□□ 0.08
PTCH1-210ENST00000468211 IGHV3-64A0A075B6Q5 118 aa15.57■□□□□ 0.08
PTCH1-210ENST00000468211 IGKV3OR2-268A0A0C4DH90 116 aa15.57■□□□□ 0.08
PTCH1-210ENST00000468211 GAGE12HA6NDE8 117 aa15.57■□□□□ 0.08
PTCH1-210ENST00000468211 AP5S1Q9NUS5 200 aa15.57■□□□□ 0.08
PTCH1-210ENST00000468211 TAGLN2P37802 199 aaKnown RBP15.56■□□□□ 0.08
PTCH1-210ENST00000468211 IGKV2D-29A0A075B6S2 120 aaPredicted RBP15.54■□□□□ 0.08
PTCH1-210ENST00000468211 A0A087WYN8 130 aa15.54■□□□□ 0.08
PTCH1-210ENST00000468211 TRAV16A0A0A6YYK6 109 aaPredicted RBP15.54■□□□□ 0.08
PTCH1-210ENST00000468211 IGKV2-29A2NJV5 120 aaPredicted RBP15.54■□□□□ 0.08
PTCH1-210ENST00000468211 SPACA4Q8TDM5 124 aa15.54■□□□□ 0.08
PTCH1-210ENST00000468211 DPH3Q96FX2 82 aa15.52■□□□□ 0.08
PTCH1-210ENST00000468211 SDHAF1A6NFY7 115 aa15.51■□□□□ 0.07
PTCH1-210ENST00000468211 GATCO43716 136 aaKnown RBP15.51■□□□□ 0.07
PTCH1-210ENST00000468211 GAS8-AS1O95177 125 aa15.51■□□□□ 0.07
PTCH1-210ENST00000468211 HIGD2BQ4VC39 106 aa15.51■□□□□ 0.07
PTCH1-210ENST00000468211 CHCHD10Q8WYQ3 142 aaPredicted RBP15.51■□□□□ 0.07
PTCH1-210ENST00000468211 NCR2O95944 276 aa15.5■□□□□ 0.07
PTCH1-210ENST00000468211 MT1HL1P0DM35 61 aa15.5■□□□□ 0.07
PTCH1-210ENST00000468211 AMMECR1LQ6DCA0 310 aa15.5■□□□□ 0.07
PTCH1-210ENST00000468211 RNASEKQ6P5S7 137 aaKnown RBP15.5■□□□□ 0.07
PTCH1-210ENST00000468211 RNF185Q96GF1 192 aa15.5■□□□□ 0.07
PTCH1-210ENST00000468211 UBR4Q5T4S7 5183 aa15.5■□□□□ 0.07
PTCH1-210ENST00000468211 FAM231BA6NCW3 169 aa15.49■□□□□ 0.07
PTCH1-210ENST00000468211 TMEM250H0YL14 139 aa15.49■□□□□ 0.07
PTCH1-210ENST00000468211 APCSP02743 223 aa15.49■□□□□ 0.07
PTCH1-210ENST00000468211 FGF6P10767 208 aa15.49■□□□□ 0.07
PTCH1-210ENST00000468211 ALKAL2Q6UX46 152 aa15.49■□□□□ 0.07
PTCH1-210ENST00000468211 SMIM15Q7Z3B0 74 aa15.49■□□□□ 0.07
PTCH1-210ENST00000468211 COX6A2Q02221 97 aa15.48■□□□□ 0.07
PTCH1-210ENST00000468211 FAM231DQ6ZW35 169 aa15.48■□□□□ 0.07
PTCH1-210ENST00000468211 PLAC8Q9NZF1 115 aa15.48■□□□□ 0.07
PTCH1-210ENST00000468211 PLA2G2DQ9UNK4 145 aa15.48■□□□□ 0.07
PTCH1-210ENST00000468211 H7C423 109 aa15.47■□□□□ 0.07
PTCH1-210ENST00000468211 RPS10P46783 165 aaKnown RBP15.47■□□□□ 0.07
PTCH1-210ENST00000468211 CFAP161Q6P656 301 aa15.47■□□□□ 0.07
PTCH1-210ENST00000468211 PRSS3P2Q8NHM4 247 aa15.47■□□□□ 0.07
PTCH1-210ENST00000468211 A8MWL6 223 aa15.46■□□□□ 0.07
PTCH1-210ENST00000468211 FOXI1Q12951 378 aa15.46■□□□□ 0.07
PTCH1-210ENST00000468211 TEX261Q6UWH6 196 aa15.46■□□□□ 0.07
PTCH1-210ENST00000468211 LYPD6BQ8NI32 183 aa15.46■□□□□ 0.07
PTCH1-210ENST00000468211 CEBPGP53567 150 aa15.45■□□□□ 0.06
PTCH1-210ENST00000468211 GVQW2A0A096LPI5 108 aaPredicted RBP15.44■□□□□ 0.06
PTCH1-210ENST00000468211 TRBV6-5A0A0K0K1A5 114 aa15.44■□□□□ 0.06
PTCH1-210ENST00000468211 I3L3M4 83 aa15.44■□□□□ 0.06
PTCH1-210ENST00000468211 PMCHP20382 165 aa15.44■□□□□ 0.06
PTCH1-210ENST00000468211 BLOC1S1P78537 153 aa15.44■□□□□ 0.06
PTCH1-210ENST00000468211 Q6ZRU5 148 aa15.44■□□□□ 0.06
PTCH1-210ENST00000468211 PHOX2AO14813 284 aa15.43■□□□□ 0.06
PTCH1-210ENST00000468211 TSHBP01222 138 aa15.43■□□□□ 0.06
PTCH1-210ENST00000468211 ESDP10768 282 aa15.43■□□□□ 0.06
PTCH1-210ENST00000468211 IGKV2-24A0A0C4DH68 120 aa15.42■□□□□ 0.06
PTCH1-210ENST00000468211 CT83Q5H943 113 aa15.42■□□□□ 0.06
PTCH1-210ENST00000468211 OR5A1Q8NGJ0 315 aa15.42■□□□□ 0.06
PTCH1-210ENST00000468211 NDUFS6O75380 124 aaKnown RBP15.41■□□□□ 0.06
PTCH1-210ENST00000468211 ZNF25P17030 456 aaPredicted RBP15.41■□□□□ 0.06
PTCH1-210ENST00000468211 XCL1P47992 114 aa15.41■□□□□ 0.06
PTCH1-210ENST00000468211 MAJINQ3KP22 176 aa15.41■□□□□ 0.06
PTCH1-210ENST00000468211 AKAP14Q86UN6 197 aa15.41■□□□□ 0.06
PTCH1-210ENST00000468211 TMEM242Q9NWH2 141 aa15.41■□□□□ 0.06
PTCH1-210ENST00000468211 LINC00526Q96FQ7 95 aa15.4■□□□□ 0.06
PTCH1-210ENST00000468211 LINC00959A0A1B0GUT2 108 aa15.39■□□□□ 0.05
PTCH1-210ENST00000468211 CCL25O15444 150 aa15.39■□□□□ 0.05
PTCH1-210ENST00000468211 LINC01551Q86U37 167 aa15.39■□□□□ 0.05
PTCH1-210ENST00000468211 ST20Q9HBF5 79 aa15.39■□□□□ 0.05
PTCH1-210ENST00000468211 hCG_2014768A0A024R1R8 64 aa15.38■□□□□ 0.05
PTCH1-210ENST00000468211 A0A096LNI7 61 aa15.38■□□□□ 0.05
PTCH1-210ENST00000468211 HIGD1CA8MV81 97 aa15.38■□□□□ 0.05
PTCH1-210ENST00000468211 POLR2KP53803 58 aaKnown RBP15.38■□□□□ 0.05
PTCH1-210ENST00000468211 SMIM7Q9BQ49 75 aa15.38■□□□□ 0.05
PTCH1-210ENST00000468211 TMEM191AQ9H0A3 160 aa15.38■□□□□ 0.05
PTCH1-210ENST00000468211 A0A1B0GUT8 65 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms