RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 PYCARDQ9ULZ3 195 aa0.75□□□□□ -2.29
VPS41-207ENST00000439468 MUC5BQ9HC84 5762 aaPredicted RBP0.75□□□□□ -2.29
VPS41-207ENST00000439468 DSPPQ9NZW4 1301 aa0.74□□□□□ -2.29
VPS41-207ENST00000439468 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.74□□□□□ -2.29
VPS41-207ENST00000439468 TRAV10A0A0B4J240 114 aa0.74□□□□□ -2.29
VPS41-207ENST00000439468 GGCTO75223 188 aaKnown RBP0.74□□□□□ -2.29
VPS41-207ENST00000439468 NDUFC2O95298 119 aa0.74□□□□□ -2.29
VPS41-207ENST00000439468 IFNA4P05014 189 aa0.74□□□□□ -2.29
VPS41-207ENST00000439468 SPRR2EP22531 72 aa0.74□□□□□ -2.29
VPS41-207ENST00000439468 SPRR2BP35325 72 aa0.74□□□□□ -2.29
VPS41-207ENST00000439468 SPRR2AP35326 72 aa0.74□□□□□ -2.29
VPS41-207ENST00000439468 DSCR4P56555 118 aaPredicted RBP0.74□□□□□ -2.29
VPS41-207ENST00000439468 EIF5AL1Q6IS14 154 aaKnown RBP0.74□□□□□ -2.29
VPS41-207ENST00000439468 C4orf22Q6V702 233 aa0.74□□□□□ -2.29
VPS41-207ENST00000439468 ZNF833PQ6ZTB9 187 aa0.74□□□□□ -2.29
VPS41-207ENST00000439468 SMIM20Q8N5G0 67 aa0.74□□□□□ -2.29
VPS41-207ENST00000439468 C4orf3Q8WVX3 66 aa0.74□□□□□ -2.29
VPS41-207ENST00000439468 LINC01600Q96MT4 127 aa0.74□□□□□ -2.29
VPS41-207ENST00000439468 LINC00052Q96N35 136 aa0.74□□□□□ -2.29
VPS41-207ENST00000439468 GINS3Q9BRX5 216 aa0.74□□□□□ -2.29
VPS41-207ENST00000439468 LY96Q9Y6Y9 160 aa0.74□□□□□ -2.29
VPS41-207ENST00000439468 MUC5ACP98088 5654 aa0.74□□□□□ -2.29
VPS41-207ENST00000439468 DUXBA0A1W2PPF3 345 aa0.73□□□□□ -2.29
VPS41-207ENST00000439468 MFSD11O43934 449 aa0.73□□□□□ -2.29
VPS41-207ENST00000439468 PIAS1O75925 651 aa0.73□□□□□ -2.29
VPS41-207ENST00000439468 CMPK1P30085 196 aa0.73□□□□□ -2.29
VPS41-207ENST00000439468 PHBP35232 272 aa0.73□□□□□ -2.29
VPS41-207ENST00000439468 TMBIM6P55061 237 aa0.73□□□□□ -2.29
VPS41-207ENST00000439468 MYL5Q02045 173 aa0.73□□□□□ -2.29
VPS41-207ENST00000439468 MSMO1Q15800 293 aa0.73□□□□□ -2.29
VPS41-207ENST00000439468 DEFB135Q30KP9 77 aa0.73□□□□□ -2.29
VPS41-207ENST00000439468 RAB37Q96AX2 223 aa0.73□□□□□ -2.29
VPS41-207ENST00000439468 TP53RKQ96S44 253 aa0.73□□□□□ -2.29
VPS41-207ENST00000439468 GPX7Q96SL4 187 aaPredicted RBP0.73□□□□□ -2.29
VPS41-207ENST00000439468 AMELYQ99218 206 aa0.73□□□□□ -2.29
VPS41-207ENST00000439468 HOPXQ9BPY8 73 aaPredicted RBP0.73□□□□□ -2.29
VPS41-207ENST00000439468 OR2J1Q9GZK6 312 aa0.73□□□□□ -2.29
VPS41-207ENST00000439468 ORMDL1Q9P0S3 153 aa0.73□□□□□ -2.29
VPS41-207ENST00000439468 IGHV1-58A0A0C4DH39 117 aa0.72□□□□□ -2.29
VPS41-207ENST00000439468 H7C1C5 153 aa0.72□□□□□ -2.29
VPS41-207ENST00000439468 CSN2P05814 226 aa0.72□□□□□ -2.29
VPS41-207ENST00000439468 GLRXP35754 106 aa0.72□□□□□ -2.29
VPS41-207ENST00000439468 LCN6P62502 163 aa0.72□□□□□ -2.29
VPS41-207ENST00000439468 RPL19P84098 196 aaKnown RBP0.72□□□□□ -2.29
VPS41-207ENST00000439468 TMEM14EPQ6UXP3 125 aa0.72□□□□□ -2.29
VPS41-207ENST00000439468 UBE2DNLQ8IWF7 75 aa0.72□□□□□ -2.29
VPS41-207ENST00000439468 OR4K15Q8NH41 348 aa0.72□□□□□ -2.29
VPS41-207ENST00000439468 POPDC3Q9HBV1 291 aa0.72□□□□□ -2.29
VPS41-207ENST00000439468 MED11Q9P086 117 aa0.72□□□□□ -2.29
VPS41-207ENST00000439468 ASB4Q9Y574 426 aa0.72□□□□□ -2.29
VPS41-207ENST00000439468 A0A087WTM6 91 aa0.71□□□□□ -2.3
VPS41-207ENST00000439468 RIIAD1A6NNX1 92 aa0.71□□□□□ -2.3
VPS41-207ENST00000439468 E7EUB6 86 aa0.71□□□□□ -2.3
VPS41-207ENST00000439468 NCR3O14931 201 aa0.71□□□□□ -2.3
VPS41-207ENST00000439468 DEFB4AO15263 64 aa0.71□□□□□ -2.3
VPS41-207ENST00000439468 ERC2-IT1O76042 136 aa0.71□□□□□ -2.3
VPS41-207ENST00000439468 IFNA1P01562 189 aa0.71□□□□□ -2.3
VPS41-207ENST00000439468 TRGC2P03986 189 aa0.71□□□□□ -2.3
VPS41-207ENST00000439468 SPRR2DP22532 72 aa0.71□□□□□ -2.3
VPS41-207ENST00000439468 G0S2P27469 103 aa0.71□□□□□ -2.3
VPS41-207ENST00000439468 PPP1R2P41236 205 aa0.71□□□□□ -2.3
VPS41-207ENST00000439468 TAS2R41P59536 307 aa0.71□□□□□ -2.3
VPS41-207ENST00000439468 RPL37AP61513 92 aaKnown RBP0.71□□□□□ -2.3
VPS41-207ENST00000439468 SNRPFP62306 86 aaKnown RBP0.71□□□□□ -2.3
VPS41-207ENST00000439468 GNG3P63215 75 aa0.71□□□□□ -2.3
VPS41-207ENST00000439468 CDK6Q00534 326 aa0.71□□□□□ -2.3
VPS41-207ENST00000439468 PSG9Q00887 426 aa0.71□□□□□ -2.3
VPS41-207ENST00000439468 AKR1C8PQ5T2L2 129 aa0.71□□□□□ -2.3
VPS41-207ENST00000439468 PPP1R2P3Q6NXS1 205 aa0.71□□□□□ -2.3
VPS41-207ENST00000439468 C2orf82Q6UX34 121 aa0.71□□□□□ -2.3
VPS41-207ENST00000439468 Q8N6K4 173 aa0.71□□□□□ -2.3
VPS41-207ENST00000439468 OR5D16Q8NGK9 328 aa0.71□□□□□ -2.3
VPS41-207ENST00000439468 OR13C6PQ8NH95 151 aa0.71□□□□□ -2.3
VPS41-207ENST00000439468 MYOZ3Q8TDC0 251 aa0.71□□□□□ -2.3
VPS41-207ENST00000439468 AP3S1Q92572 193 aa0.71□□□□□ -2.3
VPS41-207ENST00000439468 CHCHD1Q96BP2 118 aaKnown RBP0.71□□□□□ -2.3
VPS41-207ENST00000439468 ZC2HC1AQ96GY0 325 aa0.71□□□□□ -2.3
VPS41-207ENST00000439468 ZNF714Q96N38 554 aa0.71□□□□□ -2.3
VPS41-207ENST00000439468 LYRM2Q9NU23 88 aaPredicted RBP0.71□□□□□ -2.3
VPS41-207ENST00000439468 SSR3Q9UNL2 185 aa0.71□□□□□ -2.3
VPS41-207ENST00000439468 IGLV3-32A0A0A0MS00 114 aa0.7□□□□□ -2.3
VPS41-207ENST00000439468 CCL22O00626 93 aa0.7□□□□□ -2.3
VPS41-207ENST00000439468 IFNA21P01568 189 aa0.7□□□□□ -2.3
VPS41-207ENST00000439468 IFNA17P01571 189 aa0.7□□□□□ -2.3
VPS41-207ENST00000439468 KRTAP26-1Q6PEX3 210 aa0.7□□□□□ -2.3
VPS41-207ENST00000439468 TEX37Q96LM6 180 aa0.7□□□□□ -2.3
VPS41-207ENST00000439468 PBDC1Q9BVG4 233 aa0.7□□□□□ -2.3
VPS41-207ENST00000439468 SH3BGRL3Q9H299 93 aa0.7□□□□□ -2.3
VPS41-207ENST00000439468 LINC00846Q9NV44 126 aa0.7□□□□□ -2.3
VPS41-207ENST00000439468 TMEM14CQ9P0S9 112 aa0.7□□□□□ -2.3
VPS41-207ENST00000439468 DEFB131BA0A096LNP1 70 aa0.69□□□□□ -2.3
VPS41-207ENST00000439468 LOC285095A0A1B0GVY8 99 aa0.69□□□□□ -2.3
VPS41-207ENST00000439468 TMEM238C9JI98 176 aa0.69□□□□□ -2.3
VPS41-207ENST00000439468 F8W1H4 67 aa0.69□□□□□ -2.3
VPS41-207ENST00000439468 NUPR1O60356 82 aa0.69□□□□□ -2.3
VPS41-207ENST00000439468 IFT20Q8IY31 132 aa0.69□□□□□ -2.3
VPS41-207ENST00000439468 SNRNP25Q9BV90 132 aaKnown RBP0.69□□□□□ -2.3
VPS41-207ENST00000439468 PBOV1Q9GZY1 135 aa0.69□□□□□ -2.3
VPS41-207ENST00000439468 GID8Q9NWU2 228 aa0.69□□□□□ -2.3
VPS41-207ENST00000439468 C9orf170A2RU37 121 aa0.68□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 194.6 ms