RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 FABP9Q0Z7S8 132 aa11.58□□□□□ -0.56
COL7A1-202ENST00000422991 SMIM2Q9BVW6 85 aa11.58□□□□□ -0.56
COL7A1-202ENST00000422991 TRAPPC1Q9Y5R8 145 aa11.58□□□□□ -0.56
COL7A1-202ENST00000422991 IGLV2-18A0A075B6J9 118 aa11.57□□□□□ -0.56
COL7A1-202ENST00000422991 VCYO14598 125 aa11.57□□□□□ -0.56
COL7A1-202ENST00000422991 TSHBP01222 138 aa11.57□□□□□ -0.56
COL7A1-202ENST00000422991 AMTP48728 403 aa11.56□□□□□ -0.56
COL7A1-202ENST00000422991 LINC01556Q5JQF7 62 aa11.56□□□□□ -0.56
COL7A1-202ENST00000422991 TMEM243Q9BU79 118 aa11.56□□□□□ -0.56
COL7A1-202ENST00000422991 MAP1LC3AQ9H492 121 aa11.56□□□□□ -0.56
COL7A1-202ENST00000422991 NBDYA0A0U1RRE5 68 aa11.55□□□□□ -0.56
COL7A1-202ENST00000422991 COLCA2A8K830 154 aa11.55□□□□□ -0.56
COL7A1-202ENST00000422991 PRSS47A8MTI9 375 aa11.55□□□□□ -0.56
COL7A1-202ENST00000422991 NIT1Q86X76 327 aa11.55□□□□□ -0.56
COL7A1-202ENST00000422991 CHCHD5Q9BSY4 110 aa11.55□□□□□ -0.56
COL7A1-202ENST00000422991 ALKBH7Q9BT30 221 aaPredicted RBP11.55□□□□□ -0.56
COL7A1-202ENST00000422991 TTC32Q5I0X7 151 aa11.54□□□□□ -0.56
COL7A1-202ENST00000422991 Q6ZR54 194 aa11.54□□□□□ -0.56
COL7A1-202ENST00000422991 Q8N3U1 123 aa11.54□□□□□ -0.56
COL7A1-202ENST00000422991 KIR2DL4Q99706 377 aa11.54□□□□□ -0.56
COL7A1-202ENST00000422991 KRTAP1-5Q9BYS1 174 aa11.54□□□□□ -0.56
COL7A1-202ENST00000422991 CHCHD7Q9BUK0 85 aa11.53□□□□□ -0.56
COL7A1-202ENST00000422991 LOC389332A0A1B0GUA5 103 aa11.52□□□□□ -0.57
COL7A1-202ENST00000422991 M0R2N4 97 aa11.52□□□□□ -0.57
COL7A1-202ENST00000422991 TCAPO15273 167 aa11.52□□□□□ -0.57
COL7A1-202ENST00000422991 IGHV3-30P01768 117 aa11.52□□□□□ -0.57
COL7A1-202ENST00000422991 IGHV3-33P01772 117 aa11.52□□□□□ -0.57
COL7A1-202ENST00000422991 IGHV3-30-3P0DP02 117 aa11.52□□□□□ -0.57
COL7A1-202ENST00000422991 IGHV3-30-5P0DP03 117 aa11.52□□□□□ -0.57
COL7A1-202ENST00000422991 ESDP10768 282 aa11.52□□□□□ -0.57
COL7A1-202ENST00000422991 RAB5AP20339 215 aa11.52□□□□□ -0.57
COL7A1-202ENST00000422991 FCER1GP30273 86 aa11.52□□□□□ -0.57
COL7A1-202ENST00000422991 PKIAP61925 76 aa11.52□□□□□ -0.57
COL7A1-202ENST00000422991 GAGE6Q13070 117 aa11.52□□□□□ -0.57
COL7A1-202ENST00000422991 EPPK1P58107 5090 aaKnown RBP11.52□□□□□ -0.57
COL7A1-202ENST00000422991 K7EP13 123 aa11.51□□□□□ -0.57
COL7A1-202ENST00000422991 MPV17L2Q567V2 206 aa11.51□□□□□ -0.57
COL7A1-202ENST00000422991 Q8N8P6 123 aa11.51□□□□□ -0.57
COL7A1-202ENST00000422991 A0A087WX48 190 aa11.5□□□□□ -0.57
COL7A1-202ENST00000422991 TMEM262E9PQX1 116 aa11.5□□□□□ -0.57
COL7A1-202ENST00000422991 UBE2L6O14933 153 aa11.5□□□□□ -0.57
COL7A1-202ENST00000422991 C10orf126Q8N4M7 172 aa11.5□□□□□ -0.57
COL7A1-202ENST00000422991 NXT2Q9NPJ8 142 aaKnown RBP11.5□□□□□ -0.57
COL7A1-202ENST00000422991 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.49□□□□□ -0.57
COL7A1-202ENST00000422991 TRAV9-2A0A087WT02 112 aa11.49□□□□□ -0.57
COL7A1-202ENST00000422991 IGKV2-29A2NJV5 120 aaPredicted RBP11.49□□□□□ -0.57
COL7A1-202ENST00000422991 H7C423 109 aa11.49□□□□□ -0.57
COL7A1-202ENST00000422991 TRGC2P03986 189 aa11.48□□□□□ -0.57
COL7A1-202ENST00000422991 IFI27P40305 119 aaPredicted RBP11.48□□□□□ -0.57
COL7A1-202ENST00000422991 RBX1P62877 108 aa11.48□□□□□ -0.57
COL7A1-202ENST00000422991 DNAH2Q9P225 4427 aa11.48□□□□□ -0.57
COL7A1-202ENST00000422991 Q8N976 141 aa11.47□□□□□ -0.57
COL7A1-202ENST00000422991 C18orf32Q8TCD1 76 aa11.47□□□□□ -0.57
COL7A1-202ENST00000422991 A0A1B0GUV1 79 aa11.46□□□□□ -0.57
COL7A1-202ENST00000422991 IBA57-AS1B1ANH7 110 aa11.46□□□□□ -0.57
COL7A1-202ENST00000422991 K7EMI3 77 aa11.46□□□□□ -0.57
COL7A1-202ENST00000422991 FGF6P10767 208 aa11.46□□□□□ -0.57
COL7A1-202ENST00000422991 C20orf203Q8NBC4 194 aa11.46□□□□□ -0.57
COL7A1-202ENST00000422991 FRAS1Q86XX4 4008 aa11.45□□□□□ -0.58
COL7A1-202ENST00000422991 LAGE3Q14657 143 aa11.45□□□□□ -0.58
COL7A1-202ENST00000422991 MRPL52Q86TS9 123 aaKnown RBP11.45□□□□□ -0.58
COL7A1-202ENST00000422991 PRSS3P2Q8NHM4 247 aa11.45□□□□□ -0.58
COL7A1-202ENST00000422991 KLK12Q9UKR0 248 aa11.45□□□□□ -0.58
COL7A1-202ENST00000422991 IGLV4-60A0A075B6I1 120 aa11.44□□□□□ -0.58
COL7A1-202ENST00000422991 LINC01546A6NGU7 62 aa11.44□□□□□ -0.58
COL7A1-202ENST00000422991 ZNF25P17030 456 aaPredicted RBP11.44□□□□□ -0.58
COL7A1-202ENST00000422991 BTF3P20290 206 aaKnown RBP11.44□□□□□ -0.58
COL7A1-202ENST00000422991 ORMDL2Q53FV1 153 aa11.44□□□□□ -0.58
COL7A1-202ENST00000422991 AMMECR1LQ6DCA0 310 aa11.44□□□□□ -0.58
COL7A1-202ENST00000422991 ANGP03950 147 aaKnown RBP11.43□□□□□ -0.58
COL7A1-202ENST00000422991 RPL39P62891 51 aaKnown RBP11.43□□□□□ -0.58
COL7A1-202ENST00000422991 C1orf134Q5TEV5 83 aa11.43□□□□□ -0.58
COL7A1-202ENST00000422991 RNASEKQ6P5S7 137 aaKnown RBP11.43□□□□□ -0.58
COL7A1-202ENST00000422991 C6orf223Q8N319 242 aa11.43□□□□□ -0.58
COL7A1-202ENST00000422991 TMEM18Q96B42 140 aa11.43□□□□□ -0.58
COL7A1-202ENST00000422991 DNAH10Q8IVF4 4471 aa11.42□□□□□ -0.58
COL7A1-202ENST00000422991 FA2HQ7L5A8 372 aa11.42□□□□□ -0.58
COL7A1-202ENST00000422991 TIMM21Q9BVV7 248 aa11.42□□□□□ -0.58
COL7A1-202ENST00000422991 UBE2D4Q9Y2X8 147 aa11.42□□□□□ -0.58
COL7A1-202ENST00000422991 SMAGPQ0VAQ4 97 aa11.41□□□□□ -0.58
COL7A1-202ENST00000422991 URB1-AS1Q96HZ7 61 aa11.41□□□□□ -0.58
COL7A1-202ENST00000422991 PRR34Q9NV39 138 aa11.41□□□□□ -0.58
COL7A1-202ENST00000422991 LINC00269Q8N2A0 174 aa11.4□□□□□ -0.58
COL7A1-202ENST00000422991 OR5A1Q8NGJ0 315 aa11.4□□□□□ -0.58
COL7A1-202ENST00000422991 UBE2WQ96B02 151 aa11.4□□□□□ -0.58
COL7A1-202ENST00000422991 TMEM101Q96IK0 257 aa11.4□□□□□ -0.58
COL7A1-202ENST00000422991 Q9HAA7 133 aa11.4□□□□□ -0.58
COL7A1-202ENST00000422991 CSDC2Q9Y534 153 aaKnown RBP11.4□□□□□ -0.58
COL7A1-202ENST00000422991 BIRC6Q9NR09 4857 aa11.4□□□□□ -0.58
COL7A1-202ENST00000422991 TRAV8-3A0A0A6YYJ7 113 aa11.39□□□□□ -0.59
COL7A1-202ENST00000422991 CRPP02741 224 aa11.39□□□□□ -0.59
COL7A1-202ENST00000422991 CLPSL2Q6UWE3 100 aa11.39□□□□□ -0.59
COL7A1-202ENST00000422991 ENHOQ6UWT2 76 aa11.39□□□□□ -0.59
COL7A1-202ENST00000422991 C2orf66Q6UXQ4 117 aa11.39□□□□□ -0.59
COL7A1-202ENST00000422991 Q6ZRN7 208 aaPredicted RBP11.39□□□□□ -0.59
COL7A1-202ENST00000422991 NFE4Q86UQ8 179 aa11.39□□□□□ -0.59
COL7A1-202ENST00000422991 SPANXA1Q9NS26 97 aa11.39□□□□□ -0.59
COL7A1-202ENST00000422991 AP5S1Q9NUS5 200 aa11.39□□□□□ -0.59
COL7A1-202ENST00000422991 CYSLTR1Q9Y271 337 aa11.39□□□□□ -0.59
COL7A1-202ENST00000422991 DNAH17Q9UFH2 4485 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms