RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 S100A2P29034 98 aa9.97□□□□□ -0.81
SKA1-202ENST00000398452 POLR2KP53803 58 aaKnown RBP9.97□□□□□ -0.81
SKA1-202ENST00000398452 ORMDL2Q53FV1 153 aa9.97□□□□□ -0.81
SKA1-202ENST00000398452 STAB2Q8WWQ8 2551 aa9.97□□□□□ -0.81
SKA1-202ENST00000398452 NACAE9PAV3 2078 aa9.97□□□□□ -0.81
SKA1-202ENST00000398452 TRBV27A0A0K0K1C4 114 aa9.96□□□□□ -0.82
SKA1-202ENST00000398452 LOC100131303A0A0U1RQF7 123 aa9.96□□□□□ -0.82
SKA1-202ENST00000398452 SERF1AO75920 110 aa9.96□□□□□ -0.82
SKA1-202ENST00000398452 NUDT3O95989 172 aa9.96□□□□□ -0.82
SKA1-202ENST00000398452 UBE2D3P61077 147 aa9.96□□□□□ -0.82
SKA1-202ENST00000398452 UBE2D2P62837 147 aa9.96□□□□□ -0.82
SKA1-202ENST00000398452 LAGE3Q14657 143 aa9.96□□□□□ -0.82
SKA1-202ENST00000398452 ATP6V0E2Q8NHE4 81 aa9.96□□□□□ -0.82
SKA1-202ENST00000398452 IGHV3-38A0A0C4DH36 116 aa9.95□□□□□ -0.82
SKA1-202ENST00000398452 NEGR1Q7Z3B1 354 aa9.95□□□□□ -0.82
SKA1-202ENST00000398452 C15orf53Q8NAA6 179 aa9.95□□□□□ -0.82
SKA1-202ENST00000398452 TMEM18Q96B42 140 aa9.95□□□□□ -0.82
SKA1-202ENST00000398452 VSIG2Q96IQ7 327 aa9.95□□□□□ -0.82
SKA1-202ENST00000398452 KMT2CQ8NEZ4 4911 aaKnown RBP9.95□□□□□ -0.82
SKA1-202ENST00000398452 KLK5Q9Y337 293 aaPredicted RBP9.94□□□□□ -0.82
SKA1-202ENST00000398452 LINC01549A6NIU2 74 aa9.93□□□□□ -0.82
SKA1-202ENST00000398452 AMTP48728 403 aa9.93□□□□□ -0.82
SKA1-202ENST00000398452 SMAGPQ0VAQ4 97 aa9.93□□□□□ -0.82
SKA1-202ENST00000398452 COA6Q5JTJ3 125 aaKnown RBP9.93□□□□□ -0.82
SKA1-202ENST00000398452 TRBV25-1A0A075B6N4 114 aa9.92□□□□□ -0.82
SKA1-202ENST00000398452 A0A096LPF7 62 aa9.92□□□□□ -0.82
SKA1-202ENST00000398452 NUPR2A6NF83 97 aa9.92□□□□□ -0.82
SKA1-202ENST00000398452 IGLL5B9A064 214 aa9.92□□□□□ -0.82
SKA1-202ENST00000398452 C3orf84H3BNL1 204 aa9.92□□□□□ -0.82
SKA1-202ENST00000398452 UBE2L6O14933 153 aa9.92□□□□□ -0.82
SKA1-202ENST00000398452 BTF3P20290 206 aaKnown RBP9.92□□□□□ -0.82
SKA1-202ENST00000398452 SNRPEP62304 92 aaKnown RBP9.92□□□□□ -0.82
SKA1-202ENST00000398452 GTSF1LQ9H1H1 148 aa9.92□□□□□ -0.82
SKA1-202ENST00000398452 Q9UF83 564 aa9.92□□□□□ -0.82
SKA1-202ENST00000398452 IGLV2-18A0A075B6J9 118 aa9.91□□□□□ -0.82
SKA1-202ENST00000398452 IGHV1-24A0A0C4DH33 117 aa9.91□□□□□ -0.82
SKA1-202ENST00000398452 HBDP02042 147 aa9.91□□□□□ -0.82
SKA1-202ENST00000398452 PDZD11Q5EBL8 140 aa9.91□□□□□ -0.82
SKA1-202ENST00000398452 ZFAND6Q6FIF0 208 aa9.91□□□□□ -0.82
SKA1-202ENST00000398452 MUC7Q8TAX7 377 aa9.91□□□□□ -0.82
SKA1-202ENST00000398452 CYSLTR1Q9Y271 337 aa9.91□□□□□ -0.82
SKA1-202ENST00000398452 TSHBP01222 138 aa9.9□□□□□ -0.82
SKA1-202ENST00000398452 DEFB104AQ8WTQ1 72 aa9.9□□□□□ -0.82
SKA1-202ENST00000398452 LINC01546A6NGU7 62 aa9.89□□□□□ -0.83
SKA1-202ENST00000398452 LINC00694P0DN24 101 aa9.89□□□□□ -0.83
SKA1-202ENST00000398452 ESDP10768 282 aa9.89□□□□□ -0.83
SKA1-202ENST00000398452 CEMP1Q6PRD7 247 aaPredicted RBP9.89□□□□□ -0.83
SKA1-202ENST00000398452 TMEM243Q9BU79 118 aa9.89□□□□□ -0.83
SKA1-202ENST00000398452 HUWE1Q7Z6Z7 4374 aaKnown RBP9.88□□□□□ -0.83
SKA1-202ENST00000398452 TRBV6-8A0A0A6YYG3 113 aa9.88□□□□□ -0.83
SKA1-202ENST00000398452 TRAV8-6A0A0B4J262 113 aa9.88□□□□□ -0.83
SKA1-202ENST00000398452 C5orf52A6NGY3 159 aa9.88□□□□□ -0.83
SKA1-202ENST00000398452 LEPROTL1O95214 131 aa9.88□□□□□ -0.83
SKA1-202ENST00000398452 PKIAP61925 76 aa9.88□□□□□ -0.83
SKA1-202ENST00000398452 CASC10Q5T4H9 136 aa9.88□□□□□ -0.83
SKA1-202ENST00000398452 DGAT2L7PQ6IED9 249 aa9.88□□□□□ -0.83
SKA1-202ENST00000398452 C2orf66Q6UXQ4 117 aa9.88□□□□□ -0.83
SKA1-202ENST00000398452 FAM19A2Q8N3H0 131 aa9.88□□□□□ -0.83
SKA1-202ENST00000398452 URB1-AS1Q96HZ7 61 aa9.88□□□□□ -0.83
SKA1-202ENST00000398452 CHCHD5Q9BSY4 110 aa9.88□□□□□ -0.83
SKA1-202ENST00000398452 HSPB8Q9UJY1 196 aa9.88□□□□□ -0.83
SKA1-202ENST00000398452 TENM2Q9NT68 2774 aa9.88□□□□□ -0.83
SKA1-202ENST00000398452 TCTAP57738 103 aa9.87□□□□□ -0.83
SKA1-202ENST00000398452 PMCHL1Q16048 86 aa9.87□□□□□ -0.83
SKA1-202ENST00000398452 AMMECR1LQ6DCA0 310 aa9.87□□□□□ -0.83
SKA1-202ENST00000398452 H7C423 109 aa9.86□□□□□ -0.83
SKA1-202ENST00000398452 NUPR1O60356 82 aa9.86□□□□□ -0.83
SKA1-202ENST00000398452 GHRHP01286 108 aa9.86□□□□□ -0.83
SKA1-202ENST00000398452 CCL18P55774 89 aa9.86□□□□□ -0.83
SKA1-202ENST00000398452 LELP1Q5T871 98 aa9.86□□□□□ -0.83
SKA1-202ENST00000398452 HIST3H2BBQ8N257 126 aa9.86□□□□□ -0.83
SKA1-202ENST00000398452 C20orf203Q8NBC4 194 aa9.86□□□□□ -0.83
SKA1-202ENST00000398452 TMEM101Q96IK0 257 aa9.86□□□□□ -0.83
SKA1-202ENST00000398452 RYR3Q15413 4870 aa9.86□□□□□ -0.83
SKA1-202ENST00000398452 TMEM262E9PQX1 116 aa9.85□□□□□ -0.83
SKA1-202ENST00000398452 ATP5LO75964 103 aa9.85□□□□□ -0.83
SKA1-202ENST00000398452 FABP4P15090 132 aa9.85□□□□□ -0.83
SKA1-202ENST00000398452 TIRAPP58753 221 aa9.85□□□□□ -0.83
SKA1-202ENST00000398452 LINC00310P59036 64 aa9.85□□□□□ -0.83
SKA1-202ENST00000398452 LYPD5Q6UWN5 251 aa9.85□□□□□ -0.83
SKA1-202ENST00000398452 TOMM6Q96B49 74 aa9.85□□□□□ -0.83
SKA1-202ENST00000398452 SCGB3A1Q96QR1 104 aa9.85□□□□□ -0.83
SKA1-202ENST00000398452 KRTAP4-12Q9BQ66 201 aa9.85□□□□□ -0.83
SKA1-202ENST00000398452 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.84□□□□□ -0.83
SKA1-202ENST00000398452 IGKV2-29A2NJV5 120 aaPredicted RBP9.84□□□□□ -0.83
SKA1-202ENST00000398452 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.84□□□□□ -0.83
SKA1-202ENST00000398452 PAPPA-AS1Q5QFB9 102 aa9.84□□□□□ -0.83
SKA1-202ENST00000398452 Q6ZN92 141 aa9.84□□□□□ -0.83
SKA1-202ENST00000398452 PACRGQ96M98 296 aaPredicted RBP9.84□□□□□ -0.83
SKA1-202ENST00000398452 CHCHD7Q9BUK0 85 aa9.84□□□□□ -0.83
SKA1-202ENST00000398452 SPANXA1Q9NS26 97 aa9.84□□□□□ -0.83
SKA1-202ENST00000398452 GAGE6Q13070 117 aa9.83□□□□□ -0.84
SKA1-202ENST00000398452 NTM-AS1Q6ZSK4 140 aa9.83□□□□□ -0.84
SKA1-202ENST00000398452 UBE2DNLQ8IWF7 75 aa9.83□□□□□ -0.84
SKA1-202ENST00000398452 MAP1LC3CQ9BXW4 147 aa9.83□□□□□ -0.84
SKA1-202ENST00000398452 A0A087WX48 190 aa9.82□□□□□ -0.84
SKA1-202ENST00000398452 ERASQ7Z444 233 aa9.82□□□□□ -0.84
SKA1-202ENST00000398452 OR5A1Q8NGJ0 315 aa9.82□□□□□ -0.84
SKA1-202ENST00000398452 TMEM141Q96I45 108 aa9.82□□□□□ -0.84
SKA1-202ENST00000398452 HIST1H2BLQ99880 126 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 182 ms