RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 GDF5OSQ5U4N7 250 aa7.8□□□□□ -1.16
LIMCH1-203ENST00000396595 MBD6Q96DN6 1003 aa7.8□□□□□ -1.16
LIMCH1-203ENST00000396595 SPRY4Q9C004 299 aa7.8□□□□□ -1.16
LIMCH1-203ENST00000396595 OBSL1O75147 1896 aa7.8□□□□□ -1.16
LIMCH1-203ENST00000396595 SPG11Q96JI7 2443 aa7.8□□□□□ -1.16
LIMCH1-203ENST00000396595 ZFP36P26651 326 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-203ENST00000396595 DEFB1P60022 68 aa7.8□□□□□ -1.16
LIMCH1-203ENST00000396595 SPAG11BQ08648 103 aa7.8□□□□□ -1.16
LIMCH1-203ENST00000396595 Q6Q795 121 aa7.8□□□□□ -1.16
LIMCH1-203ENST00000396595 FAM19A3Q7Z5A8 133 aa7.8□□□□□ -1.16
LIMCH1-203ENST00000396595 ZNF295-AS1Q8N0V1 137 aa7.8□□□□□ -1.16
LIMCH1-203ENST00000396595 ANKHD1Q8IWZ3 2542 aaKnown RBP7.8□□□□□ -1.16
LIMCH1-203ENST00000396595 ZNF80P51504 273 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-203ENST00000396595 SOSTDC1Q6X4U4 206 aa7.79□□□□□ -1.16
LIMCH1-203ENST00000396595 SCXQ7RTU7 201 aa7.79□□□□□ -1.16
LIMCH1-203ENST00000396595 COL4A3Q01955 1670 aa7.79□□□□□ -1.16
LIMCH1-203ENST00000396595 IGHV3-30P01768 117 aa7.79□□□□□ -1.16
LIMCH1-203ENST00000396595 IGHV3-33P01772 117 aa7.79□□□□□ -1.16
LIMCH1-203ENST00000396595 IGHV3-30-5P0DP03 117 aa7.79□□□□□ -1.16
LIMCH1-203ENST00000396595 TIRAPP58753 221 aa7.79□□□□□ -1.16
LIMCH1-203ENST00000396595 BRWD1-AS2P59051 145 aa7.79□□□□□ -1.16
LIMCH1-203ENST00000396595 UNQ9165/PRO28630Q6UXU0 137 aa7.79□□□□□ -1.16
LIMCH1-203ENST00000396595 MRPS12O15235 138 aaKnown RBP7.79□□□□□ -1.16
LIMCH1-203ENST00000396595 DAZAP2Q15038 168 aaPredicted RBP7.79□□□□□ -1.16
LIMCH1-203ENST00000396595 CCL18P55774 89 aa7.79□□□□□ -1.16
LIMCH1-203ENST00000396595 TM2D2Q9BX73 214 aa7.79□□□□□ -1.16
LIMCH1-203ENST00000396595 ADORA2A-AS1P86434 159 aa7.78□□□□□ -1.16
LIMCH1-203ENST00000396595 Q6ZPA2 131 aa7.78□□□□□ -1.16
LIMCH1-203ENST00000396595 PRR4Q16378 134 aa7.78□□□□□ -1.16
LIMCH1-203ENST00000396595 FBXL19-AS1Q494R0 122 aa7.78□□□□□ -1.16
LIMCH1-203ENST00000396595 NFE4Q86UQ8 179 aa7.78□□□□□ -1.16
LIMCH1-203ENST00000396595 DENND4AQ7Z401 1863 aa7.78□□□□□ -1.16
LIMCH1-203ENST00000396595 A0A0J9YXY3 114 aa7.78□□□□□ -1.16
LIMCH1-203ENST00000396595 NANOS2P60321 138 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-203ENST00000396595 TMEM263Q8WUH6 116 aaKnown RBP7.78□□□□□ -1.16
LIMCH1-203ENST00000396595 NRGNQ92686 78 aa7.77□□□□□ -1.16
LIMCH1-203ENST00000396595 ODF3Q96PU9 254 aa7.77□□□□□ -1.16
LIMCH1-203ENST00000396595 LINC00526Q96FQ7 95 aa7.77□□□□□ -1.17
LIMCH1-203ENST00000396595 MYCNOSP40205 109 aa7.77□□□□□ -1.17
LIMCH1-203ENST00000396595 SHISA2Q6UWI4 295 aa7.77□□□□□ -1.17
LIMCH1-203ENST00000396595 A6NDX4 124 aa7.76□□□□□ -1.17
LIMCH1-203ENST00000396595 P0DMU3 169 aa7.76□□□□□ -1.17
LIMCH1-203ENST00000396595 FAM231AP0DMU4 169 aa7.76□□□□□ -1.17
LIMCH1-203ENST00000396595 FAM231CP0DMU5 169 aa7.76□□□□□ -1.17
LIMCH1-203ENST00000396595 C4orf3Q8WVX3 66 aa7.76□□□□□ -1.17
LIMCH1-203ENST00000396595 CCDC140Q96MF4 163 aa7.76□□□□□ -1.17
LIMCH1-203ENST00000396595 YPEL4Q96NS1 127 aa7.76□□□□□ -1.17
LIMCH1-203ENST00000396595 MIFP14174 115 aa7.76□□□□□ -1.17
LIMCH1-203ENST00000396595 NEXN-AS1Q8NBZ9 246 aa7.76□□□□□ -1.17
LIMCH1-203ENST00000396595 CRIP3Q6Q6R5 217 aa7.75□□□□□ -1.17
LIMCH1-203ENST00000396595 PRO0255Q9UI72 69 aa7.75□□□□□ -1.17
LIMCH1-203ENST00000396595 COX7BP24311 80 aa7.75□□□□□ -1.17
LIMCH1-203ENST00000396595 EIF4EBP1Q13541 118 aaPredicted RBP7.75□□□□□ -1.17
LIMCH1-203ENST00000396595 PRORYQ9H606 182 aa7.75□□□□□ -1.17
LIMCH1-203ENST00000396595 ESM1Q9NQ30 184 aa7.75□□□□□ -1.17
LIMCH1-203ENST00000396595 ODF3BA8MYP8 253 aa7.75□□□□□ -1.17
LIMCH1-203ENST00000396595 CEMP1Q6PRD7 247 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-203ENST00000396595 TTC28Q96AY4 2481 aa7.74□□□□□ -1.17
LIMCH1-203ENST00000396595 A0A1W2PNU3 283 aaPredicted RBP7.74□□□□□ -1.17
LIMCH1-203ENST00000396595 KLK12Q9UKR0 248 aa7.74□□□□□ -1.17
LIMCH1-203ENST00000396595 BDP1A6H8Y1 2624 aa7.74□□□□□ -1.17
LIMCH1-203ENST00000396595 DSCAML1Q8TD84 2053 aa7.74□□□□□ -1.17
LIMCH1-203ENST00000396595 WFDC10BQ8IUB3 73 aa7.74□□□□□ -1.17
LIMCH1-203ENST00000396595 PLA2G5P39877 138 aa7.73□□□□□ -1.17
LIMCH1-203ENST00000396595 MAP6D1Q9H9H5 199 aa7.73□□□□□ -1.17
LIMCH1-203ENST00000396595 ZFHX2Q9C0A1 2572 aaPredicted RBP7.73□□□□□ -1.17
LIMCH1-203ENST00000396595 Q8N9L7 120 aa7.73□□□□□ -1.17
LIMCH1-203ENST00000396595 PPDPFQ9H3Y8 114 aa7.73□□□□□ -1.17
LIMCH1-203ENST00000396595 TP53TG3Q9ULZ0 132 aa7.73□□□□□ -1.17
LIMCH1-203ENST00000396595 LOC107984640A0A0U1RRK4 108 aa7.73□□□□□ -1.17
LIMCH1-203ENST00000396595 LRCOL1A6NCL2 159 aa7.73□□□□□ -1.17
LIMCH1-203ENST00000396595 PLXNB1O43157 2135 aa7.72□□□□□ -1.17
LIMCH1-203ENST00000396595 WFDC10AQ9H1F0 79 aa7.72□□□□□ -1.17
LIMCH1-203ENST00000396595 TRBV30A0A0K0K1B3 111 aa7.72□□□□□ -1.17
LIMCH1-203ENST00000396595 TNFRSF13BO14836 293 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-203ENST00000396595 ZNF22P17026 224 aaPredicted RBP7.72□□□□□ -1.17
LIMCH1-203ENST00000396595 FAM222AQ5U5X8 452 aa7.72□□□□□ -1.17
LIMCH1-203ENST00000396595 CFAP126Q5VTH2 177 aa7.72□□□□□ -1.17
LIMCH1-203ENST00000396595 UFSP1Q6NVU6 142 aa7.72□□□□□ -1.17
LIMCH1-203ENST00000396595 DEFB135Q30KP9 77 aa7.72□□□□□ -1.17
LIMCH1-203ENST00000396595 CSPG4Q6UVK1 2322 aa7.72□□□□□ -1.17
LIMCH1-203ENST00000396595 PSPHP1O15172 72 aa7.72□□□□□ -1.17
LIMCH1-203ENST00000396595 Q6JHZ5 121 aa7.72□□□□□ -1.17
LIMCH1-203ENST00000396595 ZFAND2AQ8N6M9 145 aa7.72□□□□□ -1.17
LIMCH1-203ENST00000396595 A0A0J9YWU9 116 aa7.71□□□□□ -1.17
LIMCH1-203ENST00000396595 ZFAND3Q9H8U3 227 aa7.71□□□□□ -1.17
LIMCH1-203ENST00000396595 U3KQK5 164 aa7.71□□□□□ -1.17
LIMCH1-203ENST00000396595 TNRC6BQ9UPQ9 1833 aaKnown RBP7.71□□□□□ -1.17
LIMCH1-203ENST00000396595 TMEM223A0PJW6 202 aa7.71□□□□□ -1.17
LIMCH1-203ENST00000396595 EBI3Q14213 229 aa7.71□□□□□ -1.17
LIMCH1-203ENST00000396595 K7EQG2 157 aa7.71□□□□□ -1.18
LIMCH1-203ENST00000396595 TRIAP1O43715 76 aa7.71□□□□□ -1.18
LIMCH1-203ENST00000396595 FSTL3O95633 263 aa7.71□□□□□ -1.18
LIMCH1-203ENST00000396595 IGF1P05019 195 aa7.71□□□□□ -1.18
LIMCH1-203ENST00000396595 PRR14LQ5THK1 2151 aa7.71□□□□□ -1.18
LIMCH1-203ENST00000396595 MUC6Q6W4X9 2439 aa7.71□□□□□ -1.18
LIMCH1-203ENST00000396595 CDKN2A-AS1Q9UH64 79 aa7.71□□□□□ -1.18
LIMCH1-203ENST00000396595 KIF26AQ9ULI4 1882 aaPredicted RBP7.71□□□□□ -1.18
LIMCH1-203ENST00000396595 MED12LQ86YW9 2145 aa7.71□□□□□ -1.18
LIMCH1-203ENST00000396595 IGLV4-3A0A075B6K6 122 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms