RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 MUSTN1Q8IVN3 82 aa15.13■□□□□ 0.01
CLK3-202ENST00000395066 ZNF22P17026 224 aaPredicted RBP15.13■□□□□ 0.01
CLK3-202ENST00000395066 LINC01356Q8N9X3 169 aa15.13■□□□□ 0.01
CLK3-202ENST00000395066 RHODO00212 210 aa15.13■□□□□ 0.01
CLK3-202ENST00000395066 ZNF469Q96JG9 3925 aaPredicted RBP15.12■□□□□ 0.01
CLK3-202ENST00000395066 I3L3M4 83 aa15.12■□□□□ 0.01
CLK3-202ENST00000395066 M0QXV9 152 aa15.12■□□□□ 0.01
CLK3-202ENST00000395066 IGLV4-3A0A075B6K6 122 aa15.12■□□□□ 0.01
CLK3-202ENST00000395066 DEFB131AP59861 70 aa15.12■□□□□ 0.01
CLK3-202ENST00000395066 ZNF702PQ9H963 129 aa15.11■□□□□ 0.01
CLK3-202ENST00000395066 ZNF462Q96JM2 2506 aa15.1■□□□□ 0.01
CLK3-202ENST00000395066 TRAV16A0A0A6YYK6 109 aaPredicted RBP15.09■□□□□ 0.01
CLK3-202ENST00000395066 RBMY1BA6NDE4 496 aaKnown RBP15.09■□□□□ 0.01
CLK3-202ENST00000395066 RBMY1EA6NEQ0 496 aaKnown RBP15.09■□□□□ 0.01
CLK3-202ENST00000395066 RBMY1DP0C7P1 496 aaKnown RBP15.09■□□□□ 0.01
CLK3-202ENST00000395066 GATA3P23771 443 aa15.09■□□□□ 0.01
CLK3-202ENST00000395066 Q1RN00 199 aa15.09■□□□□ 0.01
CLK3-202ENST00000395066 RNF183Q96D59 192 aa15.09■□□□□ 0.01
CLK3-202ENST00000395066 SPXQ9BT56 116 aa15.09■□□□□ 0.01
CLK3-202ENST00000395066 VPREB3Q9UKI3 123 aa15.09■□□□□ 0.01
CLK3-202ENST00000395066 A0A096LNT2 108 aa15.09■□□□□ 0.01
CLK3-202ENST00000395066 NACAE9PAV3 2078 aa15.08■□□□□ 0.01
CLK3-202ENST00000395066 M0R2P5 195 aa15.08■□□□□ 0
CLK3-202ENST00000395066 ZFAND6Q6FIF0 208 aa15.08■□□□□ 0
CLK3-202ENST00000395066 Q6ZSN1 163 aa15.08■□□□□ 0
CLK3-202ENST00000395066 FAM104AQ969W3 186 aa15.08■□□□□ 0
CLK3-202ENST00000395066 AKAP9Q99996 3911 aa15.07■□□□□ 0
CLK3-202ENST00000395066 ELANEP08246 267 aa15.07■□□□□ 0
CLK3-202ENST00000395066 TRGV11A0A075B6L2 103 aa15.07■□□□□ 0
CLK3-202ENST00000395066 TRAV8-3A0A0A6YYJ7 113 aa15.07■□□□□ 0
CLK3-202ENST00000395066 A0A0J9YXY3 114 aa15.07■□□□□ 0
CLK3-202ENST00000395066 ATXN8Q156A1 80 aa15.07■□□□□ 0
CLK3-202ENST00000395066 TEX29Q8N6K0 151 aa15.07■□□□□ 0
CLK3-202ENST00000395066 CD28P10747 220 aa15.06■□□□□ 0
CLK3-202ENST00000395066 ANAPC13Q9BS18 74 aa15.06■□□□□ 0
CLK3-202ENST00000395066 CHD6Q8TD26 2715 aa15.06■□□□□ 0
CLK3-202ENST00000395066 NAV2Q8IVL1 2488 aa15.06■□□□□ 0
CLK3-202ENST00000395066 PRB1P04280 392 aa15.06■□□□□ 0
CLK3-202ENST00000395066 CITED1Q99966 193 aa15.06■□□□□ 0
CLK3-202ENST00000395066 EPG5Q9HCE0 2579 aa15.06■□□□□ 0
CLK3-202ENST00000395066 WNK1Q9H4A3 2382 aa15.05■□□□□ 0
CLK3-202ENST00000395066 A8MZ25 164 aa15.05■□□□□ 0
CLK3-202ENST00000395066 LINC01620Q4KN68 170 aa15.05■□□□□ 0
CLK3-202ENST00000395066 NTN5Q8WTR8 489 aaPredicted RBP15.05■□□□□ 0
CLK3-202ENST00000395066 UBE2E2Q96LR5 201 aa15.05■□□□□ 0
CLK3-202ENST00000395066 SONP18583 2426 aaKnown RBP15.05■□□□□ 0
CLK3-202ENST00000395066 IGHV3-38A0A0C4DH36 116 aa15.04■□□□□ -0
CLK3-202ENST00000395066 TMEM89A2RUT3 159 aa15.04■□□□□ -0
CLK3-202ENST00000395066 KHDC1LQ5JSQ8 128 aa15.04■□□□□ -0
CLK3-202ENST00000395066 PRRC2AP48634 2157 aaKnown RBP15.04■□□□□ -0
CLK3-202ENST00000395066 NOTCH3Q9UM47 2321 aa15.04■□□□□ -0
CLK3-202ENST00000395066 IGHV3-30-3P0DP02 117 aa15.04■□□□□ -0
CLK3-202ENST00000395066 TMEM61Q8N0U2 210 aa15.04■□□□□ -0
CLK3-202ENST00000395066 TIMM21Q9BVV7 248 aa15.03■□□□□ -0
CLK3-202ENST00000395066 IGKV2D-29A0A075B6S2 120 aaPredicted RBP15.02■□□□□ -0
CLK3-202ENST00000395066 IGKV2-29A2NJV5 120 aaPredicted RBP15.02■□□□□ -0
CLK3-202ENST00000395066 H3BMM0 161 aa15.02■□□□□ -0
CLK3-202ENST00000395066 DSCR9P59020 149 aa15.02■□□□□ -0
CLK3-202ENST00000395066 Q6YL49 198 aa15.02■□□□□ -0
CLK3-202ENST00000395066 NF1P21359 2839 aa15.02■□□□□ -0
CLK3-202ENST00000395066 TRBV30A0A0K0K1B3 111 aa15.02□□□□□ -0.01
CLK3-202ENST00000395066 TRIAP1O43715 76 aa15.01□□□□□ -0.01
CLK3-202ENST00000395066 LITAFQ99732 161 aa15.01□□□□□ -0.01
CLK3-202ENST00000395066 TNFRSF18Q9Y5U5 241 aa15.01□□□□□ -0.01
CLK3-202ENST00000395066 KRTAP10-9P60411 292 aa15.01□□□□□ -0.01
CLK3-202ENST00000395066 NPC2P61916 151 aa15.01□□□□□ -0.01
CLK3-202ENST00000395066 SETD2Q9BYW2 2564 aaPredicted RBP15□□□□□ -0.01
CLK3-202ENST00000395066 LINC01600Q96MT4 127 aa15□□□□□ -0.01
CLK3-202ENST00000395066 NIPBLQ6KC79 2804 aaeCLIP15□□□□□ -0.01
CLK3-202ENST00000395066 CR1P17927 2039 aa14.99□□□□□ -0.01
CLK3-202ENST00000395066 TRBV10-2A0A0K0K1G8 114 aa14.99□□□□□ -0.01
CLK3-202ENST00000395066 SNCGO76070 127 aa14.99□□□□□ -0.01
CLK3-202ENST00000395066 PRSS2P07478 247 aa14.99□□□□□ -0.01
CLK3-202ENST00000395066 PYGO1Q9Y3Y4 419 aa14.99□□□□□ -0.01
CLK3-202ENST00000395066 MRPS36P82909 103 aaKnown RBP14.99□□□□□ -0.01
CLK3-202ENST00000395066 TEX49A0A1B0GTD5 131 aa14.98□□□□□ -0.01
CLK3-202ENST00000395066 RPL13AP40429 203 aaKnown RBP14.98□□□□□ -0.01
CLK3-202ENST00000395066 IGHV4-31P0DP07 118 aa14.98□□□□□ -0.01
CLK3-202ENST00000395066 GAGE2BQ13066 116 aa14.98□□□□□ -0.01
CLK3-202ENST00000395066 GAGE2EQ4V326 116 aa14.98□□□□□ -0.01
CLK3-202ENST00000395066 GAGE2DQ9UEU5 116 aa14.98□□□□□ -0.01
CLK3-202ENST00000395066 TRAV4A0A0B4J268 109 aa14.97□□□□□ -0.01
CLK3-202ENST00000395066 J3QLI3 93 aa14.97□□□□□ -0.01
CLK3-202ENST00000395066 ADAMTSL4-AS1Q5T5F5 129 aa14.97□□□□□ -0.01
CLK3-202ENST00000395066 LINC01587Q99440 93 aa14.97□□□□□ -0.01
CLK3-202ENST00000395066 CRLF1O75462 422 aa14.96□□□□□ -0.01
CLK3-202ENST00000395066 Q6ZSV7 163 aa14.96□□□□□ -0.01
CLK3-202ENST00000395066 LINC00467Q9BRT7 94 aa14.96□□□□□ -0.01
CLK3-202ENST00000395066 CHCHD7Q9BUK0 85 aa14.96□□□□□ -0.01
CLK3-202ENST00000395066 NBPF19A0A087WUL8 3843 aa14.96□□□□□ -0.01
CLK3-202ENST00000395066 IGHV1-58A0A0C4DH39 117 aa14.96□□□□□ -0.01
CLK3-202ENST00000395066 ICOSQ9Y6W8 199 aa14.96□□□□□ -0.01
CLK3-202ENST00000395066 TRAV8-4A0A0B4J246 113 aa14.96□□□□□ -0.02
CLK3-202ENST00000395066 RNF152Q8N8N0 203 aa14.96□□□□□ -0.02
CLK3-202ENST00000395066 SVIPQ8NHG7 77 aa14.96□□□□□ -0.02
CLK3-202ENST00000395066 SPANXDQ9BXN6 97 aa14.96□□□□□ -0.02
CLK3-202ENST00000395066 MAP6D1Q9H9H5 199 aa14.96□□□□□ -0.02
CLK3-202ENST00000395066 SPANXCQ9NY87 97 aa14.96□□□□□ -0.02
CLK3-202ENST00000395066 NDUFA12Q9UI09 145 aa14.96□□□□□ -0.02
CLK3-202ENST00000395066 FSHBP01225 129 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms