RNA–Protein interactions for RNA: ENST00000394597.6

RFFL-202, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RFFL, Length 4,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-202ENST00000394597 DEFB131AP59861 70 aa4.32□□□□□ -1.72
RFFL-202ENST00000394597 RHOHQ15669 191 aa4.32□□□□□ -1.72
RFFL-202ENST00000394597 IMUPQ9GZP8 106 aa4.32□□□□□ -1.72
RFFL-202ENST00000394597 TOMM7Q9P0U1 55 aa4.32□□□□□ -1.72
RFFL-202ENST00000394597 U3KQK5 164 aa4.32□□□□□ -1.72
RFFL-202ENST00000394597 K7EMT4 169 aa4.31□□□□□ -1.72
RFFL-202ENST00000394597 SPRY2O43597 315 aa4.31□□□□□ -1.72
RFFL-202ENST00000394597 UBE2D3P61077 147 aa4.31□□□□□ -1.72
RFFL-202ENST00000394597 TMEM258P61165 79 aa4.31□□□□□ -1.72
RFFL-202ENST00000394597 UBE2D2P62837 147 aa4.31□□□□□ -1.72
RFFL-202ENST00000394597 GPHB5Q86YW7 130 aa4.31□□□□□ -1.72
RFFL-202ENST00000394597 SLC25A29Q8N8R3 303 aa4.31□□□□□ -1.72
RFFL-202ENST00000394597 MRPL53Q96EL3 112 aaKnown RBP4.31□□□□□ -1.72
RFFL-202ENST00000394597 RNF152Q8N8N0 203 aa4.31□□□□□ -1.72
RFFL-202ENST00000394597 TOMM6Q96B49 74 aa4.31□□□□□ -1.72
RFFL-202ENST00000394597 DSCR8Q96T75 97 aa4.31□□□□□ -1.72
RFFL-202ENST00000394597 TRBV6-1A0A0K0K1D8 114 aa4.31□□□□□ -1.72
RFFL-202ENST00000394597 LEPROTO15243 131 aa4.31□□□□□ -1.72
RFFL-202ENST00000394597 NDUFC2O95298 119 aa4.31□□□□□ -1.72
RFFL-202ENST00000394597 CRIP1P50238 77 aa4.31□□□□□ -1.72
RFFL-202ENST00000394597 UBE2D1P51668 147 aa4.31□□□□□ -1.72
RFFL-202ENST00000394597 CRIP2P52943 208 aaPredicted RBP4.31□□□□□ -1.72
RFFL-202ENST00000394597 FN1P02751 2386 aaKnown RBP4.31□□□□□ -1.72
RFFL-202ENST00000394597 TINCRA0A1B0GVN0 87 aa4.3□□□□□ -1.72
RFFL-202ENST00000394597 KNCNA6PVL3 124 aa4.3□□□□□ -1.72
RFFL-202ENST00000394597 AVPP01185 164 aa4.3□□□□□ -1.72
RFFL-202ENST00000394597 CCDC140Q96MF4 163 aa4.3□□□□□ -1.72
RFFL-202ENST00000394597 PRRC2AP48634 2157 aaKnown RBP4.3□□□□□ -1.72
RFFL-202ENST00000394597 MTORP42345 2549 aa4.3□□□□□ -1.72
RFFL-202ENST00000394597 TRIAP1O43715 76 aa4.3□□□□□ -1.72
RFFL-202ENST00000394597 P0DMU3 169 aa4.3□□□□□ -1.72
RFFL-202ENST00000394597 FAM231AP0DMU4 169 aa4.3□□□□□ -1.72
RFFL-202ENST00000394597 FAM231CP0DMU5 169 aa4.3□□□□□ -1.72
RFFL-202ENST00000394597 LINC00526Q96FQ7 95 aa4.3□□□□□ -1.72
RFFL-202ENST00000394597 AGPAT4-IT1Q9H0P7 198 aa4.3□□□□□ -1.72
RFFL-202ENST00000394597 CCL24O00175 119 aa4.3□□□□□ -1.72
RFFL-202ENST00000394597 PRIMA1Q86XR5 153 aa4.3□□□□□ -1.72
RFFL-202ENST00000394597 MUC3AQ02505 3323 aa4.3□□□□□ -1.72
RFFL-202ENST00000394597 RPL39P62891 51 aaKnown RBP4.29□□□□□ -1.72
RFFL-202ENST00000394597 DEFB136Q30KP8 78 aa4.29□□□□□ -1.72
RFFL-202ENST00000394597 OVOL2Q9BRP0 275 aa4.29□□□□□ -1.72
RFFL-202ENST00000394597 LENEPQ9Y5L5 61 aa4.29□□□□□ -1.72
RFFL-202ENST00000394597 IGHV4OR15-8A0A075B7B6 117 aa4.29□□□□□ -1.72
RFFL-202ENST00000394597 A0A087WW49 117 aa4.29□□□□□ -1.72
RFFL-202ENST00000394597 A0A0J9YXV3 536 aa4.29□□□□□ -1.72
RFFL-202ENST00000394597 DNAJC9-AS1A6NH13 148 aa4.29□□□□□ -1.72
RFFL-202ENST00000394597 GAS8-AS1O95177 125 aa4.29□□□□□ -1.72
RFFL-202ENST00000394597 TRBV12-3P01733 135 aa4.29□□□□□ -1.72
RFFL-202ENST00000394597 ZNF80P51504 273 aaPredicted RBP4.29□□□□□ -1.72
RFFL-202ENST00000394597 SLURP1P55000 103 aa4.29□□□□□ -1.72
RFFL-202ENST00000394597 SDIM1Q6ZPB5 146 aa4.29□□□□□ -1.72
RFFL-202ENST00000394597 NEXN-AS1Q8NBZ9 246 aa4.29□□□□□ -1.72
RFFL-202ENST00000394597 ZMAT4Q9H898 229 aa4.29□□□□□ -1.72
RFFL-202ENST00000394597 LAMA1P25391 3075 aa4.29□□□□□ -1.72
RFFL-202ENST00000394597 IGHV3-30P01768 117 aa4.29□□□□□ -1.72
RFFL-202ENST00000394597 NHLRC4P0CG21 123 aaPredicted RBP4.29□□□□□ -1.72
RFFL-202ENST00000394597 IGHV3-30-5P0DP03 117 aa4.29□□□□□ -1.72
RFFL-202ENST00000394597 IGLV2-11P01706 119 aa4.29□□□□□ -1.72
RFFL-202ENST00000394597 ZNF22P17026 224 aaPredicted RBP4.29□□□□□ -1.72
RFFL-202ENST00000394597 UNQ9165/PRO28630Q6UXU0 137 aa4.29□□□□□ -1.72
RFFL-202ENST00000394597 C20orf197Q8N268 126 aa4.29□□□□□ -1.72
RFFL-202ENST00000394597 RNF185Q96GF1 192 aa4.29□□□□□ -1.72
RFFL-202ENST00000394597 UBL5Q9BZL1 73 aa4.29□□□□□ -1.72
RFFL-202ENST00000394597 FLNBO75369 2602 aaKnown RBP4.28□□□□□ -1.72
RFFL-202ENST00000394597 EPG5Q9HCE0 2579 aa4.28□□□□□ -1.72
RFFL-202ENST00000394597 Q6ZS46 218 aa4.28□□□□□ -1.72
RFFL-202ENST00000394597 MDFICQ9P1T7 246 aa4.28□□□□□ -1.72
RFFL-202ENST00000394597 TRBV30A0A0K0K1B3 111 aa4.28□□□□□ -1.72
RFFL-202ENST00000394597 INSP01308 110 aa4.28□□□□□ -1.72
RFFL-202ENST00000394597 SPINK13Q1W4C9 94 aa4.28□□□□□ -1.72
RFFL-202ENST00000394597 RASL10AQ92737 203 aa4.28□□□□□ -1.72
RFFL-202ENST00000394597 TET2Q6N021 2002 aaPredicted RBP4.28□□□□□ -1.72
RFFL-202ENST00000394597 LINC00158P58513 81 aa4.28□□□□□ -1.72
RFFL-202ENST00000394597 FHL3Q13643 280 aa4.28□□□□□ -1.72
RFFL-202ENST00000394597 DEFB121Q5J5C9 76 aa4.28□□□□□ -1.72
RFFL-202ENST00000394597 SERP2Q8N6R1 65 aa4.28□□□□□ -1.72
RFFL-202ENST00000394597 DAND5Q8N907 189 aa4.28□□□□□ -1.72
RFFL-202ENST00000394597 FAM240AA0A1B0GVK7 77 aa4.27□□□□□ -1.73
RFFL-202ENST00000394597 F6UB75 175 aa4.27□□□□□ -1.73
RFFL-202ENST00000394597 UBE2L6O14933 153 aa4.27□□□□□ -1.73
RFFL-202ENST00000394597 PAX4O43316 350 aa4.27□□□□□ -1.73
RFFL-202ENST00000394597 GHRHP01286 108 aa4.27□□□□□ -1.73
RFFL-202ENST00000394597 RPL35AP18077 110 aaKnown RBP4.27□□□□□ -1.73
RFFL-202ENST00000394597 HAMPP81172 84 aa4.27□□□□□ -1.73
RFFL-202ENST00000394597 RNASE13Q5GAN3 156 aaKnown RBP4.27□□□□□ -1.73
RFFL-202ENST00000394597 C4orf3Q8WVX3 66 aa4.27□□□□□ -1.73
RFFL-202ENST00000394597 PSMG3-AS1Q96PY0 264 aa4.27□□□□□ -1.73
RFFL-202ENST00000394597 TRGV2A0A075B6R0 118 aa4.27□□□□□ -1.73
RFFL-202ENST00000394597 IGHV3-73A0A0B4J1V6 119 aa4.27□□□□□ -1.73
RFFL-202ENST00000394597 FAM236DA0A1B0GTK5 79 aa4.27□□□□□ -1.73
RFFL-202ENST00000394597 CLPSL1A2RUU4 121 aa4.27□□□□□ -1.73
RFFL-202ENST00000394597 FAM236CP0DP71 79 aa4.27□□□□□ -1.73
RFFL-202ENST00000394597 PFN2P35080 140 aa4.27□□□□□ -1.73
RFFL-202ENST00000394597 DAZ2Q13117 558 aaKnown RBP4.27□□□□□ -1.73
RFFL-202ENST00000394597 DAZ4Q86SG3 579 aaKnown RBP4.27□□□□□ -1.73
RFFL-202ENST00000394597 ODF3Q96PU9 254 aa4.27□□□□□ -1.73
RFFL-202ENST00000394597 DAZ3Q9NR90 486 aaKnown RBP4.27□□□□□ -1.73
RFFL-202ENST00000394597 IGHV1OR15-1A0A075B7D0 117 aa4.27□□□□□ -1.73
RFFL-202ENST00000394597 PRAC2D3DTV9 90 aa4.27□□□□□ -1.73
RFFL-202ENST00000394597 H7C423 109 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms