RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 CCDC140Q96MF4 163 aa9.66□□□□□ -0.86
CCDC88C-204ENST00000389857 Q6YL49 198 aa9.66□□□□□ -0.86
CCDC88C-204ENST00000389857 FAM236DA0A1B0GTK5 79 aa9.66□□□□□ -0.86
CCDC88C-204ENST00000389857 IBA57-AS1B1ANH7 110 aa9.66□□□□□ -0.86
CCDC88C-204ENST00000389857 FAM236CP0DP71 79 aa9.66□□□□□ -0.86
CCDC88C-204ENST00000389857 UBE2D1P51668 147 aa9.66□□□□□ -0.86
CCDC88C-204ENST00000389857 NDUFC2-KCTD14E9PQ53 114 aa9.65□□□□□ -0.86
CCDC88C-204ENST00000389857 WFDC10BQ8IUB3 73 aa9.65□□□□□ -0.86
CCDC88C-204ENST00000389857 KIAA1549Q9HCM3 1950 aa9.65□□□□□ -0.86
CCDC88C-204ENST00000389857 UQCRQO14949 82 aa9.65□□□□□ -0.87
CCDC88C-204ENST00000389857 SDIM1Q6ZPB5 146 aa9.65□□□□□ -0.87
CCDC88C-204ENST00000389857 ODF3BA8MYP8 253 aa9.64□□□□□ -0.87
CCDC88C-204ENST00000389857 ATP5EP56381 51 aaPredicted RBP9.64□□□□□ -0.87
CCDC88C-204ENST00000389857 MIFP14174 115 aa9.64□□□□□ -0.87
CCDC88C-204ENST00000389857 FAM19A5Q7Z5A7 132 aaPredicted RBP9.64□□□□□ -0.87
CCDC88C-204ENST00000389857 SPATA12Q7Z6I5 190 aa9.64□□□□□ -0.87
CCDC88C-204ENST00000389857 TMEM223A0PJW6 202 aa9.64□□□□□ -0.87
CCDC88C-204ENST00000389857 PLA2G2EQ9NZK7 142 aa9.64□□□□□ -0.87
CCDC88C-204ENST00000389857 A0A096LNI7 61 aa9.63□□□□□ -0.87
CCDC88C-204ENST00000389857 PIK3CD-AS1Q5SR53 167 aa9.63□□□□□ -0.87
CCDC88C-204ENST00000389857 NCOA6Q14686 2063 aaPredicted RBP9.63□□□□□ -0.87
CCDC88C-204ENST00000389857 FAM240AA0A1B0GVK7 77 aa9.63□□□□□ -0.87
CCDC88C-204ENST00000389857 IGHV4-31P0DP07 118 aa9.63□□□□□ -0.87
CCDC88C-204ENST00000389857 NDUFV3P56181 108 aaKnown RBP9.63□□□□□ -0.87
CCDC88C-204ENST00000389857 PTH2Q96A98 100 aa9.63□□□□□ -0.87
CCDC88C-204ENST00000389857 DEFB114Q30KQ6 69 aa9.63□□□□□ -0.87
CCDC88C-204ENST00000389857 ENHOQ6UWT2 76 aa9.63□□□□□ -0.87
CCDC88C-204ENST00000389857 MRPL55Q7Z7F7 128 aaKnown RBP9.63□□□□□ -0.87
CCDC88C-204ENST00000389857 NEXN-AS1Q8NBZ9 246 aa9.63□□□□□ -0.87
CCDC88C-204ENST00000389857 SPRY4Q9C004 299 aa9.62□□□□□ -0.87
CCDC88C-204ENST00000389857 SHANK1Q9Y566 2161 aa9.62□□□□□ -0.87
CCDC88C-204ENST00000389857 A0A1B0GXF2 115 aa9.62□□□□□ -0.87
CCDC88C-204ENST00000389857 IGF1P05019 195 aa9.62□□□□□ -0.87
CCDC88C-204ENST00000389857 RNASE8Q8TDE3 154 aaKnown RBP9.62□□□□□ -0.87
CCDC88C-204ENST00000389857 C20orf197Q8N268 126 aa9.61□□□□□ -0.87
CCDC88C-204ENST00000389857 ZNF80P51504 273 aaPredicted RBP9.61□□□□□ -0.87
CCDC88C-204ENST00000389857 TRBV6-8A0A0A6YYG3 113 aa9.61□□□□□ -0.87
CCDC88C-204ENST00000389857 TEX49A0A1B0GTD5 131 aa9.61□□□□□ -0.87
CCDC88C-204ENST00000389857 IGLC6P0CF74 106 aa9.61□□□□□ -0.87
CCDC88C-204ENST00000389857 K7EQG2 157 aa9.61□□□□□ -0.87
CCDC88C-204ENST00000389857 NDUFC1O43677 76 aa9.61□□□□□ -0.87
CCDC88C-204ENST00000389857 TNCP24821 2201 aa9.6□□□□□ -0.87
CCDC88C-204ENST00000389857 SHISA2Q6UWI4 295 aa9.6□□□□□ -0.87
CCDC88C-204ENST00000389857 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.6□□□□□ -0.87
CCDC88C-204ENST00000389857 CFAP126Q5VTH2 177 aa9.6□□□□□ -0.87
CCDC88C-204ENST00000389857 DHRS4-AS1Q9P1J3 65 aa9.6□□□□□ -0.87
CCDC88C-204ENST00000389857 SCXQ7RTU7 201 aa9.6□□□□□ -0.87
CCDC88C-204ENST00000389857 LINC00308Q8TCZ7 52 aa9.6□□□□□ -0.87
CCDC88C-204ENST00000389857 SERP1Q9Y6X1 66 aa9.6□□□□□ -0.87
CCDC88C-204ENST00000389857 IGLV4-3A0A075B6K6 122 aa9.59□□□□□ -0.87
CCDC88C-204ENST00000389857 TRAV10A0A0B4J240 114 aa9.59□□□□□ -0.87
CCDC88C-204ENST00000389857 PRORYQ9H606 182 aa9.59□□□□□ -0.87
CCDC88C-204ENST00000389857 TRBV6-4A0A1B0GX49 114 aa9.59□□□□□ -0.87
CCDC88C-204ENST00000389857 LINC01548A6NM66 108 aa9.59□□□□□ -0.87
CCDC88C-204ENST00000389857 SYCNQ0VAF6 134 aa9.59□□□□□ -0.87
CCDC88C-204ENST00000389857 UBE2D4Q9Y2X8 147 aa9.59□□□□□ -0.87
CCDC88C-204ENST00000389857 CDKN2A-AS1Q9UH64 79 aa9.59□□□□□ -0.87
CCDC88C-204ENST00000389857 SLPIP03973 132 aa9.58□□□□□ -0.88
CCDC88C-204ENST00000389857 LINC00574Q9H8X3 128 aa9.58□□□□□ -0.88
CCDC88C-204ENST00000389857 NUP210LQ5VU65 1888 aa9.58□□□□□ -0.88
CCDC88C-204ENST00000389857 LYPD6Q86Y78 171 aa9.58□□□□□ -0.88
CCDC88C-204ENST00000389857 LINC00322Q6ZN03 302 aaPredicted RBP9.58□□□□□ -0.88
CCDC88C-204ENST00000389857 C20orf173Q96LM9 149 aa9.58□□□□□ -0.88
CCDC88C-204ENST00000389857 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.58□□□□□ -0.88
CCDC88C-204ENST00000389857 LMO4P61968 165 aa9.58□□□□□ -0.88
CCDC88C-204ENST00000389857 CEP192Q8TEP8 1941 aa9.58□□□□□ -0.88
CCDC88C-204ENST00000389857 CCKP06307 115 aa9.57□□□□□ -0.88
CCDC88C-204ENST00000389857 TRBV30A0A0K0K1B3 111 aa9.57□□□□□ -0.88
CCDC88C-204ENST00000389857 C1orf158Q8N1D5 194 aa9.57□□□□□ -0.88
CCDC88C-204ENST00000389857 RIF1Q5UIP0 2472 aaKnown RBP9.57□□□□□ -0.88
CCDC88C-204ENST00000389857 ZNF22P17026 224 aaPredicted RBP9.57□□□□□ -0.88
CCDC88C-204ENST00000389857 TANC2Q9HCD6 1990 aa9.57□□□□□ -0.88
CCDC88C-204ENST00000389857 MLST8Q9BVC4 326 aa9.57□□□□□ -0.88
CCDC88C-204ENST00000389857 C11orf1Q9H5F2 150 aa9.57□□□□□ -0.88
CCDC88C-204ENST00000389857 DSCAML1Q8TD84 2053 aa9.56□□□□□ -0.88
CCDC88C-204ENST00000389857 UBE2D3P61077 147 aa9.56□□□□□ -0.88
CCDC88C-204ENST00000389857 FSTL3O95633 263 aa9.56□□□□□ -0.88
CCDC88C-204ENST00000389857 FRMD6-AS1P0C7T7 363 aa9.56□□□□□ -0.88
CCDC88C-204ENST00000389857 Q8NA96 180 aa9.56□□□□□ -0.88
CCDC88C-204ENST00000389857 M0R378 163 aa9.55□□□□□ -0.88
CCDC88C-204ENST00000389857 C9orf85Q96MD7 179 aa9.55□□□□□ -0.88
CCDC88C-204ENST00000389857 M0QY20 66 aa9.55□□□□□ -0.88
CCDC88C-204ENST00000389857 TRIAP1O43715 76 aa9.55□□□□□ -0.88
CCDC88C-204ENST00000389857 TIMM17BO60830 172 aa9.55□□□□□ -0.88
CCDC88C-204ENST00000389857 INAFM1C9JVW0 142 aa9.55□□□□□ -0.88
CCDC88C-204ENST00000389857 C3orf84H3BNL1 204 aa9.55□□□□□ -0.88
CCDC88C-204ENST00000389857 P0C879 139 aa9.54□□□□□ -0.88
CCDC88C-204ENST00000389857 XAGE1AQ9HD64 81 aa9.54□□□□□ -0.88
CCDC88C-204ENST00000389857 IGLV2-8P01709 118 aa9.54□□□□□ -0.88
CCDC88C-204ENST00000389857 LY6LH3BQJ8 138 aa9.54□□□□□ -0.88
CCDC88C-204ENST00000389857 MT-ATP8P03928 68 aa9.54□□□□□ -0.88
CCDC88C-204ENST00000389857 A0A0J9YWU9 116 aa9.54□□□□□ -0.88
CCDC88C-204ENST00000389857 LOC107984640A0A0U1RRK4 108 aa9.54□□□□□ -0.88
CCDC88C-204ENST00000389857 DCANP1Q8TF63 244 aa9.54□□□□□ -0.88
CCDC88C-204ENST00000389857 LINC00474Q9P2X8 69 aa9.54□□□□□ -0.88
CCDC88C-204ENST00000389857 IGLV4-69A0A075B6H9 119 aa9.53□□□□□ -0.88
CCDC88C-204ENST00000389857 COX17Q14061 63 aa9.53□□□□□ -0.88
CCDC88C-204ENST00000389857 C6orf99Q4VX62 202 aa9.53□□□□□ -0.88
CCDC88C-204ENST00000389857 CD164L2Q6UWJ8 174 aa9.53□□□□□ -0.88
CCDC88C-204ENST00000389857 U3KQK5 164 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms