RNA–Protein interactions for RNA: ENST00000376707.4

VSX1-201, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene VSX1, Length 943 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-201ENST00000376707 PGLYRP4Q96LB8 373 aa13.63□□□□□ -0.23
VSX1-201ENST00000376707 TWIST1Q15672 202 aa13.62□□□□□ -0.23
VSX1-201ENST00000376707 GTSF1Q8WW33 167 aa13.62□□□□□ -0.23
VSX1-201ENST00000376707 REG3AQ06141 175 aa13.61□□□□□ -0.23
VSX1-201ENST00000376707 KRTAP26-1Q6PEX3 210 aa13.61□□□□□ -0.23
VSX1-201ENST00000376707 FAM231DQ6ZW35 169 aa13.61□□□□□ -0.23
VSX1-201ENST00000376707 IGLV10-54A0A075B6I4 117 aa13.6□□□□□ -0.23
VSX1-201ENST00000376707 NDUFS6O75380 124 aaKnown RBP13.6□□□□□ -0.23
VSX1-201ENST00000376707 KRTAP10-4P60372 401 aaPredicted RBP13.6□□□□□ -0.23
VSX1-201ENST00000376707 TMEM243Q9BU79 118 aa13.6□□□□□ -0.23
VSX1-201ENST00000376707 A0A1B0GUV1 79 aa13.59□□□□□ -0.23
VSX1-201ENST00000376707 C9orf163Q8N9P6 203 aa13.59□□□□□ -0.23
VSX1-201ENST00000376707 C20orf203Q8NBC4 194 aa13.58□□□□□ -0.24
VSX1-201ENST00000376707 CLRN3Q8NCR9 226 aa13.58□□□□□ -0.24
VSX1-201ENST00000376707 GATCO43716 136 aaKnown RBP13.57□□□□□ -0.24
VSX1-201ENST00000376707 CT83Q5H943 113 aa13.57□□□□□ -0.24
VSX1-201ENST00000376707 GATD1Q8NB37 220 aa13.57□□□□□ -0.24
VSX1-201ENST00000376707 TRAV8-4A0A0B4J246 113 aa13.56□□□□□ -0.24
VSX1-201ENST00000376707 A8MWL6 223 aa13.56□□□□□ -0.24
VSX1-201ENST00000376707 UBE2L6O14933 153 aa13.56□□□□□ -0.24
VSX1-201ENST00000376707 FOXA3P55318 350 aaPredicted RBP13.56□□□□□ -0.24
VSX1-201ENST00000376707 IGLV4-60A0A075B6I1 120 aa13.55□□□□□ -0.24
VSX1-201ENST00000376707 RPL37AP61513 92 aaKnown RBP13.55□□□□□ -0.24
VSX1-201ENST00000376707 COTL1Q14019 142 aa13.55□□□□□ -0.24
VSX1-201ENST00000376707 SMIM15Q7Z3B0 74 aa13.55□□□□□ -0.24
VSX1-201ENST00000376707 TRAV26-2A0A0B4J265 109 aa13.54□□□□□ -0.24
VSX1-201ENST00000376707 hDV102S1A0JD36 115 aa13.54□□□□□ -0.24
VSX1-201ENST00000376707 AMTP48728 403 aa13.54□□□□□ -0.24
VSX1-201ENST00000376707 FAM210AQ96ND0 272 aa13.54□□□□□ -0.24
VSX1-201ENST00000376707 EIF5A2Q9GZV4 153 aaKnown RBP13.54□□□□□ -0.24
VSX1-201ENST00000376707 OXTP01178 125 aa13.53□□□□□ -0.24
VSX1-201ENST00000376707 CEBPGP53567 150 aa13.53□□□□□ -0.24
VSX1-201ENST00000376707 TEX261Q6UWH6 196 aa13.53□□□□□ -0.24
VSX1-201ENST00000376707 LINC01551Q86U37 167 aa13.53□□□□□ -0.24
VSX1-201ENST00000376707 SMIM7Q9BQ49 75 aa13.53□□□□□ -0.24
VSX1-201ENST00000376707 GFRA4Q9GZZ7 299 aa13.53□□□□□ -0.24
VSX1-201ENST00000376707 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.53□□□□□ -0.24
VSX1-201ENST00000376707 SDIM1Q6ZPB5 146 aa13.52□□□□□ -0.25
VSX1-201ENST00000376707 CNBPP62633 177 aaKnown RBP13.51□□□□□ -0.25
VSX1-201ENST00000376707 RPL39LQ96EH5 51 aaKnown RBP13.51□□□□□ -0.25
VSX1-201ENST00000376707 AP5S1Q9NUS5 200 aa13.51□□□□□ -0.25
VSX1-201ENST00000376707 A0A1B0GVG6 124 aa13.5□□□□□ -0.25
VSX1-201ENST00000376707 PANO1I0J062 215 aa13.5□□□□□ -0.25
VSX1-201ENST00000376707 NCR2O95944 276 aa13.5□□□□□ -0.25
VSX1-201ENST00000376707 SRP19P09132 144 aaKnown RBP13.5□□□□□ -0.25
VSX1-201ENST00000376707 TSKUQ8WUA8 353 aa13.5□□□□□ -0.25
VSX1-201ENST00000376707 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.49□□□□□ -0.25
VSX1-201ENST00000376707 FAM231BA6NCW3 169 aa13.49□□□□□ -0.25
VSX1-201ENST00000376707 ZNF727A8MUV8 499 aa13.49□□□□□ -0.25
VSX1-201ENST00000376707 OSTCQ9NRP0 149 aa13.49□□□□□ -0.25
VSX1-201ENST00000376707 IGHV3-64A0A075B6Q5 118 aa13.47□□□□□ -0.25
VSX1-201ENST00000376707 TRBV6-5A0A0K0K1A5 114 aa13.47□□□□□ -0.25
VSX1-201ENST00000376707 A0A1B0GUT8 65 aa13.47□□□□□ -0.25
VSX1-201ENST00000376707 SDHAF1A6NFY7 115 aa13.47□□□□□ -0.25
VSX1-201ENST00000376707 HIGD1CA8MV81 97 aa13.47□□□□□ -0.25
VSX1-201ENST00000376707 SERTAD4-AS1Q5TG53 156 aa13.47□□□□□ -0.25
VSX1-201ENST00000376707 BORCS7Q96B45 105 aa13.47□□□□□ -0.25
VSX1-201ENST00000376707 LRP1Q07954 4544 aaKnown RBP13.46□□□□□ -0.25
VSX1-201ENST00000376707 IGKV3OR2-268A0A0C4DH90 116 aa13.46□□□□□ -0.25
VSX1-201ENST00000376707 H7C423 109 aa13.46□□□□□ -0.25
VSX1-201ENST00000376707 AMMECR1LQ6DCA0 310 aa13.46□□□□□ -0.25
VSX1-201ENST00000376707 DPH3Q96FX2 82 aa13.46□□□□□ -0.25
VSX1-201ENST00000376707 TMEM191AQ9H0A3 160 aa13.46□□□□□ -0.25
VSX1-201ENST00000376707 GAGE12HA6NDE8 117 aa13.45□□□□□ -0.26
VSX1-201ENST00000376707 APCSP02743 223 aa13.44□□□□□ -0.26
VSX1-201ENST00000376707 SLPIP03973 132 aa13.44□□□□□ -0.26
VSX1-201ENST00000376707 HNRNPA3P51991 378 aaKnown RBP13.44□□□□□ -0.26
VSX1-201ENST00000376707 CIRBPQ14011 172 aaKnown RBP13.44□□□□□ -0.26
VSX1-201ENST00000376707 CFAP161Q6P656 301 aa13.44□□□□□ -0.26
VSX1-201ENST00000376707 I3L3M4 83 aa13.43□□□□□ -0.26
VSX1-201ENST00000376707 FAM74A3Q4VXF1 159 aa13.43□□□□□ -0.26
VSX1-201ENST00000376707 RNASEKQ6P5S7 137 aaKnown RBP13.43□□□□□ -0.26
VSX1-201ENST00000376707 V9GYV3 84 aa13.43□□□□□ -0.26
VSX1-201ENST00000376707 GAS8-AS1O95177 125 aa13.42□□□□□ -0.26
VSX1-201ENST00000376707 C15orf56Q8N910 161 aa13.42□□□□□ -0.26
VSX1-201ENST00000376707 ISOC2Q96AB3 205 aa13.42□□□□□ -0.26
VSX1-201ENST00000376707 RNF185Q96GF1 192 aa13.42□□□□□ -0.26
VSX1-201ENST00000376707 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.41□□□□□ -0.26
VSX1-201ENST00000376707 IGKV2-29A2NJV5 120 aaPredicted RBP13.41□□□□□ -0.26
VSX1-201ENST00000376707 FGF6P10767 208 aa13.41□□□□□ -0.26
VSX1-201ENST00000376707 RAB4AP20338 218 aa13.41□□□□□ -0.26
VSX1-201ENST00000376707 TMEM241Q24JQ0 296 aa13.41□□□□□ -0.26
VSX1-201ENST00000376707 ST20Q9HBF5 79 aa13.41□□□□□ -0.26
VSX1-201ENST00000376707 CHTF8P0CG12 524 aa13.4□□□□□ -0.26
VSX1-201ENST00000376707 ZNF25P17030 456 aaPredicted RBP13.4□□□□□ -0.26
VSX1-201ENST00000376707 PMCHP20382 165 aa13.4□□□□□ -0.26
VSX1-201ENST00000376707 NUP35Q8NFH5 326 aa13.4□□□□□ -0.26
VSX1-201ENST00000376707 CHCHD10Q8WYQ3 142 aaPredicted RBP13.4□□□□□ -0.26
VSX1-201ENST00000376707 MRAP2Q96G30 205 aa13.4□□□□□ -0.26
VSX1-201ENST00000376707 FAT3Q8TDW7 4589 aa13.4□□□□□ -0.26
VSX1-201ENST00000376707 A0A087WYN8 130 aa13.39□□□□□ -0.27
VSX1-201ENST00000376707 C9JQL5 133 aa13.39□□□□□ -0.27
VSX1-201ENST00000376707 TSHBP01222 138 aa13.39□□□□□ -0.27
VSX1-201ENST00000376707 ESDP10768 282 aa13.39□□□□□ -0.27
VSX1-201ENST00000376707 POLR2KP53803 58 aaKnown RBP13.39□□□□□ -0.27
VSX1-201ENST00000376707 RPL23P62829 140 aaKnown RBP13.39□□□□□ -0.27
VSX1-201ENST00000376707 SPACA4Q8TDM5 124 aa13.39□□□□□ -0.27
VSX1-201ENST00000376707 TRBV27A0A0K0K1C4 114 aa13.38□□□□□ -0.27
VSX1-201ENST00000376707 RPS10P46783 165 aaKnown RBP13.38□□□□□ -0.27
VSX1-201ENST00000376707 RIGQ13278 110 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms