RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 LST1O00453 97 aa3.59□□□□□ -1.83
SCN1A-202ENST00000375405 PSPHP1O15172 72 aa3.59□□□□□ -1.83
SCN1A-202ENST00000375405 PDE6GP18545 87 aa3.59□□□□□ -1.83
SCN1A-202ENST00000375405 C6orf223Q8N319 242 aa3.59□□□□□ -1.83
SCN1A-202ENST00000375405 COLCA2A8K830 154 aa3.59□□□□□ -1.84
SCN1A-202ENST00000375405 PLA2G2CQ5R387 149 aa3.59□□□□□ -1.84
SCN1A-202ENST00000375405 C22orf34Q6ZV56 151 aa3.59□□□□□ -1.84
SCN1A-202ENST00000375405 SPACA4Q8TDM5 124 aa3.59□□□□□ -1.84
SCN1A-202ENST00000375405 TMEM14CQ9P0S9 112 aa3.59□□□□□ -1.84
SCN1A-202ENST00000375405 A0A1W2PPM0 123 aa3.59□□□□□ -1.84
SCN1A-202ENST00000375405 CYSRT1A8MQ03 144 aa3.59□□□□□ -1.84
SCN1A-202ENST00000375405 LINC00474Q9P2X8 69 aa3.59□□□□□ -1.84
SCN1A-202ENST00000375405 LINC01548A6NM66 108 aa3.58□□□□□ -1.84
SCN1A-202ENST00000375405 IL15RAQ13261 267 aa3.58□□□□□ -1.84
SCN1A-202ENST00000375405 C10orf105Q8TEF2 133 aa3.58□□□□□ -1.84
SCN1A-202ENST00000375405 XIRP1Q702N8 1843 aaKnown RBP3.58□□□□□ -1.84
SCN1A-202ENST00000375405 STRCP1A6NGW2 1772 aa3.58□□□□□ -1.84
SCN1A-202ENST00000375405 NPYP01303 97 aa3.58□□□□□ -1.84
SCN1A-202ENST00000375405 PYY3Q5JQD4 70 aa3.58□□□□□ -1.84
SCN1A-202ENST00000375405 RPL39LQ96EH5 51 aaKnown RBP3.58□□□□□ -1.84
SCN1A-202ENST00000375405 IGLC7A0M8Q6 106 aa3.58□□□□□ -1.84
SCN1A-202ENST00000375405 LINC01590Q5TEZ4 76 aa3.58□□□□□ -1.84
SCN1A-202ENST00000375405 UFSP1Q6NVU6 142 aa3.58□□□□□ -1.84
SCN1A-202ENST00000375405 TREML4Q6UXN2 200 aa3.58□□□□□ -1.84
SCN1A-202ENST00000375405 FAM19A3Q7Z5A8 133 aa3.58□□□□□ -1.84
SCN1A-202ENST00000375405 CELA1Q9UNI1 258 aa3.58□□□□□ -1.84
SCN1A-202ENST00000375405 K7EP13 123 aa3.57□□□□□ -1.84
SCN1A-202ENST00000375405 M0R2T5 61 aa3.57□□□□□ -1.84
SCN1A-202ENST00000375405 PRO0255Q9UI72 69 aa3.57□□□□□ -1.84
SCN1A-202ENST00000375405 ARID2Q68CP9 1835 aa3.57□□□□□ -1.84
SCN1A-202ENST00000375405 WISP3O95389 354 aaPredicted RBP3.57□□□□□ -1.84
SCN1A-202ENST00000375405 LUZP6Q538Z0 58 aa3.57□□□□□ -1.84
SCN1A-202ENST00000375405 SHANK2-AS3Q9BTD1 123 aa3.57□□□□□ -1.84
SCN1A-202ENST00000375405 NCOR2Q9Y618 2525 aa3.57□□□□□ -1.84
SCN1A-202ENST00000375405 LINC00208Q96KT6 92 aa3.57□□□□□ -1.84
SCN1A-202ENST00000375405 ZNF581Q9P0T4 197 aa3.57□□□□□ -1.84
SCN1A-202ENST00000375405 PYGO1Q9Y3Y4 419 aa3.57□□□□□ -1.84
SCN1A-202ENST00000375405 PARP14Q460N5 1801 aa3.57□□□□□ -1.84
SCN1A-202ENST00000375405 C20orf173Q96LM9 149 aa3.57□□□□□ -1.84
SCN1A-202ENST00000375405 CHCHD2Q9Y6H1 151 aaPredicted RBP3.57□□□□□ -1.84
SCN1A-202ENST00000375405 ANAPC1Q9H1A4 1944 aa3.57□□□□□ -1.84
SCN1A-202ENST00000375405 MARF1Q9Y4F3 1742 aaKnown RBP3.57□□□□□ -1.84
SCN1A-202ENST00000375405 INSL3P51460 131 aa3.56□□□□□ -1.84
SCN1A-202ENST00000375405 SOSTDC1Q6X4U4 206 aa3.56□□□□□ -1.84
SCN1A-202ENST00000375405 Q6ZSR3 168 aa3.56□□□□□ -1.84
SCN1A-202ENST00000375405 CRIPTQ9P021 101 aa3.56□□□□□ -1.84
SCN1A-202ENST00000375405 CEP192Q8TEP8 1941 aa3.56□□□□□ -1.84
SCN1A-202ENST00000375405 A0A1B0GU69 56 aa3.56□□□□□ -1.84
SCN1A-202ENST00000375405 CHCHD2P9Q5T1J5 151 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-202ENST00000375405 NUP210LQ5VU65 1888 aa3.56□□□□□ -1.84
SCN1A-202ENST00000375405 ADCYAP1P18509 176 aa3.56□□□□□ -1.84
SCN1A-202ENST00000375405 CHCHD10Q8WYQ3 142 aaPredicted RBP3.56□□□□□ -1.84
SCN1A-202ENST00000375405 LINC00526Q96FQ7 95 aa3.56□□□□□ -1.84
SCN1A-202ENST00000375405 LIMD2Q9BT23 127 aa3.56□□□□□ -1.84
SCN1A-202ENST00000375405 SHANK3Q9BYB0 1731 aa3.56□□□□□ -1.84
SCN1A-202ENST00000375405 TSHBP01222 138 aa3.56□□□□□ -1.84
SCN1A-202ENST00000375405 CDPF1Q6NVV7 123 aa3.56□□□□□ -1.84
SCN1A-202ENST00000375405 PLAC4Q8WY50 150 aa3.56□□□□□ -1.84
SCN1A-202ENST00000375405 A0A0J9YXY3 114 aa3.55□□□□□ -1.84
SCN1A-202ENST00000375405 SYCNQ0VAF6 134 aa3.55□□□□□ -1.84
SCN1A-202ENST00000375405 ACACBO00763 2458 aa3.55□□□□□ -1.84
SCN1A-202ENST00000375405 LOC107984640A0A0U1RRK4 108 aa3.55□□□□□ -1.84
SCN1A-202ENST00000375405 H7C423 109 aa3.55□□□□□ -1.84
SCN1A-202ENST00000375405 LINC01547P58512 204 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-202ENST00000375405 DEFB116Q30KQ4 102 aa3.55□□□□□ -1.84
SCN1A-202ENST00000375405 LINC00473A8K010 186 aa3.55□□□□□ -1.84
SCN1A-202ENST00000375405 TMEM131Q92545 1883 aa3.55□□□□□ -1.84
SCN1A-202ENST00000375405 LINC00482Q8N8I6 264 aa3.55□□□□□ -1.84
SCN1A-202ENST00000375405 LYRM9A8MSI8 78 aa3.55□□□□□ -1.84
SCN1A-202ENST00000375405 QRFPP83859 136 aa3.55□□□□□ -1.84
SCN1A-202ENST00000375405 DAZAP2Q15038 168 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-202ENST00000375405 C17orf82Q86X59 251 aaPredicted RBP3.55□□□□□ -1.84
SCN1A-202ENST00000375405 VOPP1Q96AW1 172 aa3.55□□□□□ -1.84
SCN1A-202ENST00000375405 K7ENP7 123 aa3.54□□□□□ -1.84
SCN1A-202ENST00000375405 ZNF883P0CG24 379 aa3.54□□□□□ -1.84
SCN1A-202ENST00000375405 REG3GQ6UW15 175 aa3.54□□□□□ -1.84
SCN1A-202ENST00000375405 C1orf229Q6ZS94 237 aaPredicted RBP3.54□□□□□ -1.84
SCN1A-202ENST00000375405 Q8N976 141 aa3.54□□□□□ -1.84
SCN1A-202ENST00000375405 MAP6D1Q9H9H5 199 aa3.54□□□□□ -1.84
SCN1A-202ENST00000375405 MDFICQ9P1T7 246 aa3.54□□□□□ -1.84
SCN1A-202ENST00000375405 PAPPA2Q9BXP8 1791 aa3.54□□□□□ -1.84
SCN1A-202ENST00000375405 M0QXV9 152 aa3.54□□□□□ -1.84
SCN1A-202ENST00000375405 ATP11AUNQ6ZP68 121 aa3.54□□□□□ -1.84
SCN1A-202ENST00000375405 EDN2P20800 178 aa3.54□□□□□ -1.84
SCN1A-202ENST00000375405 RPL39P62891 51 aaKnown RBP3.54□□□□□ -1.84
SCN1A-202ENST00000375405 C5orf67F2Z3F1 127 aa3.54□□□□□ -1.84
SCN1A-202ENST00000375405 B3GALT5-AS1P59052 145 aa3.54□□□□□ -1.84
SCN1A-202ENST00000375405 EBI3Q14213 229 aa3.54□□□□□ -1.84
SCN1A-202ENST00000375405 Q6ZS92 163 aa3.54□□□□□ -1.84
SCN1A-202ENST00000375405 TRBV10-1A0A0K0K1A3 114 aa3.54□□□□□ -1.84
SCN1A-202ENST00000375405 EPOPA6NHQ4 379 aa3.54□□□□□ -1.84
SCN1A-202ENST00000375405 MYCNOSP40205 109 aa3.54□□□□□ -1.84
SCN1A-202ENST00000375405 CYYR1Q96J86 154 aa3.54□□□□□ -1.84
SCN1A-202ENST00000375405 SIPA1L3O60292 1781 aaPredicted RBP3.54□□□□□ -1.84
SCN1A-202ENST00000375405 COL4A1P02462 1669 aa3.54□□□□□ -1.84
SCN1A-202ENST00000375405 GFRA4Q9GZZ7 299 aa3.54□□□□□ -1.84
SCN1A-202ENST00000375405 AGPAT4-IT1Q9H0P7 198 aa3.54□□□□□ -1.84
SCN1A-202ENST00000375405 C8orf17Q9NRJ1 99 aa3.54□□□□□ -1.84
SCN1A-202ENST00000375405 A0A0J9YXV3 536 aa3.54□□□□□ -1.84
SCN1A-202ENST00000375405 BLCAPP62952 87 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms